Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03549

Experiment: MGL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03547 and MPMX19_03548 are separated by 62 nucleotidesMPMX19_03548 and MPMX19_03549 are separated by 123 nucleotidesMPMX19_03549 and MPMX19_03550 are separated by 8 nucleotides MPMX19_03547: MPMX19_03547 - putative oxidoreductase, at 968,386 to 969,111 _03547 MPMX19_03548: MPMX19_03548 - Dihydroanticapsin 7-dehydrogenase, at 969,174 to 969,926 _03548 MPMX19_03549: MPMX19_03549 - HTH-type transcriptional regulator PgrR, at 970,050 to 970,958 _03549 MPMX19_03550: MPMX19_03550 - HTH-type transcriptional regulator DmlR, at 970,967 to 971,926 _03550 Position (kb) 970 971Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 969.124 kb on + strandat 969.124 kb on + strandat 969.125 kb on - strandat 969.137 kb on - strandat 969.137 kb on - strandat 969.188 kb on - strandat 969.412 kb on + strand, within MPMX19_03548at 969.413 kb on - strand, within MPMX19_03548at 969.413 kb on - strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.467 kb on - strand, within MPMX19_03548at 969.467 kb on - strand, within MPMX19_03548at 969.467 kb on - strand, within MPMX19_03548at 969.467 kb on - strand, within MPMX19_03548at 969.467 kb on - strand, within MPMX19_03548at 969.610 kb on + strand, within MPMX19_03548at 969.610 kb on + strand, within MPMX19_03548at 969.610 kb on + strand, within MPMX19_03548at 969.610 kb on + strand, within MPMX19_03548at 969.610 kb on + strand, within MPMX19_03548at 969.611 kb on - strand, within MPMX19_03548at 969.611 kb on - strand, within MPMX19_03548at 969.611 kb on - strand, within MPMX19_03548at 969.611 kb on - strand, within MPMX19_03548at 969.611 kb on - strand, within MPMX19_03548at 969.904 kb on + strandat 969.904 kb on + strandat 969.904 kb on + strandat 969.904 kb on + strandat 969.904 kb on + strandat 969.904 kb on + strandat 969.904 kb on + strandat 969.905 kb on - strandat 969.905 kb on - strandat 969.905 kb on - strandat 969.905 kb on - strandat 969.905 kb on - strandat 969.905 kb on - strandat 969.957 kb on + strandat 969.958 kb on - strandat 969.958 kb on - strandat 969.958 kb on - strandat 970.035 kb on + strandat 970.044 kb on + strandat 970.063 kb on + strandat 970.063 kb on + strandat 970.064 kb on - strandat 970.064 kb on - strandat 970.064 kb on - strandat 970.064 kb on - strandat 970.205 kb on + strand, within MPMX19_03549at 970.205 kb on + strand, within MPMX19_03549at 970.205 kb on + strand, within MPMX19_03549at 970.206 kb on - strand, within MPMX19_03549at 970.206 kb on - strand, within MPMX19_03549at 970.206 kb on - strand, within MPMX19_03549at 970.206 kb on - strand, within MPMX19_03549at 970.405 kb on - strand, within MPMX19_03549at 970.567 kb on - strand, within MPMX19_03549at 970.567 kb on - strand, within MPMX19_03549at 970.567 kb on - strand, within MPMX19_03549at 970.657 kb on - strand, within MPMX19_03549at 970.800 kb on + strand, within MPMX19_03549at 970.869 kb on + strandat 970.870 kb on - strandat 970.870 kb on - strandat 970.870 kb on - strandat 970.980 kb on + strandat 970.980 kb on + strandat 970.981 kb on - strandat 970.981 kb on - strandat 970.981 kb on - strandat 971.076 kb on + strand, within MPMX19_03550at 971.076 kb on + strand, within MPMX19_03550at 971.252 kb on - strand, within MPMX19_03550at 971.460 kb on + strand, within MPMX19_03550at 971.460 kb on + strand, within MPMX19_03550at 971.460 kb on + strand, within MPMX19_03550at 971.460 kb on + strand, within MPMX19_03550at 971.460 kb on + strand, within MPMX19_03550at 971.460 kb on + strand, within MPMX19_03550at 971.460 kb on + strand, within MPMX19_03550at 971.461 kb on - strand, within MPMX19_03550at 971.461 kb on - strand, within MPMX19_03550at 971.461 kb on - strand, within MPMX19_03550at 971.461 kb on - strand, within MPMX19_03550at 971.461 kb on - strand, within MPMX19_03550at 971.461 kb on - strand, within MPMX19_03550at 971.461 kb on - strand, within MPMX19_03550at 971.461 kb on - strand, within MPMX19_03550at 971.461 kb on - strand, within MPMX19_03550at 971.523 kb on + strand, within MPMX19_03550at 971.523 kb on + strand, within MPMX19_03550at 971.523 kb on + strand, within MPMX19_03550at 971.524 kb on - strand, within MPMX19_03550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MGL
remove
969,124 + -1.1
969,124 + -1.1
969,125 - -0.2
969,137 - -2.5
969,137 - -0.5
969,188 - -0.8
969,412 + MPMX19_03548 0.32 -0.2
969,413 - MPMX19_03548 0.32 +0.0
969,413 - MPMX19_03548 0.32 -1.1
969,466 + MPMX19_03548 0.39 -1.6
969,466 + MPMX19_03548 0.39 -0.6
969,466 + MPMX19_03548 0.39 -0.5
969,466 + MPMX19_03548 0.39 -0.9
969,466 + MPMX19_03548 0.39 +1.0
969,466 + MPMX19_03548 0.39 -0.8
969,466 + MPMX19_03548 0.39 +0.3
969,466 + MPMX19_03548 0.39 -0.9
969,466 + MPMX19_03548 0.39 -0.1
969,466 + MPMX19_03548 0.39 -0.7
969,466 + MPMX19_03548 0.39 -0.5
969,466 + MPMX19_03548 0.39 -0.2
969,466 + MPMX19_03548 0.39 -0.5
969,466 + MPMX19_03548 0.39 +0.1
969,467 - MPMX19_03548 0.39 +0.8
969,467 - MPMX19_03548 0.39 -1.5
969,467 - MPMX19_03548 0.39 -1.2
969,467 - MPMX19_03548 0.39 -0.4
969,467 - MPMX19_03548 0.39 -2.6
969,610 + MPMX19_03548 0.58 -1.6
969,610 + MPMX19_03548 0.58 -0.7
969,610 + MPMX19_03548 0.58 +0.2
969,610 + MPMX19_03548 0.58 +0.2
969,610 + MPMX19_03548 0.58 +1.0
969,611 - MPMX19_03548 0.58 -1.6
969,611 - MPMX19_03548 0.58 -1.4
969,611 - MPMX19_03548 0.58 -0.8
969,611 - MPMX19_03548 0.58 +0.0
969,611 - MPMX19_03548 0.58 +0.3
969,904 + -1.8
969,904 + -0.9
969,904 + -0.5
969,904 + -0.5
969,904 + +1.3
969,904 + -1.0
969,904 + -0.5
969,905 - -2.4
969,905 - -0.8
969,905 - -1.2
969,905 - -0.2
969,905 - -0.2
969,905 - -2.2
969,957 + +0.2
969,958 - +0.2
969,958 - -0.8
969,958 - -2.2
970,035 + -1.4
970,044 + +2.0
970,063 + -1.0
970,063 + -0.8
970,064 - -1.0
970,064 - -0.5
970,064 - -0.3
970,064 - +0.5
970,205 + MPMX19_03549 0.17 +1.3
970,205 + MPMX19_03549 0.17 +1.8
970,205 + MPMX19_03549 0.17 -1.0
970,206 - MPMX19_03549 0.17 +1.1
970,206 - MPMX19_03549 0.17 +0.5
970,206 - MPMX19_03549 0.17 +0.5
970,206 - MPMX19_03549 0.17 +0.0
970,405 - MPMX19_03549 0.39 -1.0
970,567 - MPMX19_03549 0.57 +0.2
970,567 - MPMX19_03549 0.57 +1.8
970,567 - MPMX19_03549 0.57 +0.3
970,657 - MPMX19_03549 0.67 -0.1
970,800 + MPMX19_03549 0.83 -0.7
970,869 + -0.5
970,870 - +1.5
970,870 - -2.0
970,870 - +0.9
970,980 + -1.0
970,980 + -0.7
970,981 - -0.4
970,981 - +1.9
970,981 - +1.0
971,076 + MPMX19_03550 0.11 -1.2
971,076 + MPMX19_03550 0.11 -2.8
971,252 - MPMX19_03550 0.30 +0.0
971,460 + MPMX19_03550 0.51 -1.1
971,460 + MPMX19_03550 0.51 -0.7
971,460 + MPMX19_03550 0.51 -1.6
971,460 + MPMX19_03550 0.51 -0.5
971,460 + MPMX19_03550 0.51 -1.1
971,460 + MPMX19_03550 0.51 -1.2
971,460 + MPMX19_03550 0.51 -0.3
971,461 - MPMX19_03550 0.51 -0.1
971,461 - MPMX19_03550 0.51 +1.6
971,461 - MPMX19_03550 0.51 -1.8
971,461 - MPMX19_03550 0.51 -1.5
971,461 - MPMX19_03550 0.51 +1.8
971,461 - MPMX19_03550 0.51 -0.1
971,461 - MPMX19_03550 0.51 -0.5
971,461 - MPMX19_03550 0.51 -1.3
971,461 - MPMX19_03550 0.51 -1.2
971,523 + MPMX19_03550 0.58 -0.5
971,523 + MPMX19_03550 0.58 +0.9
971,523 + MPMX19_03550 0.58 -0.2
971,524 - MPMX19_03550 0.58 -0.5

Or see this region's nucleotide sequence