Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03215

Experiment: MGL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03214 and MPMX19_03215 are separated by 234 nucleotidesMPMX19_03215 and MPMX19_03216 are separated by 170 nucleotidesMPMX19_03216 and MPMX19_03217 are separated by 47 nucleotides MPMX19_03214: MPMX19_03214 - hypothetical protein, at 512,675 to 514,129 _03214 MPMX19_03215: MPMX19_03215 - HTH-type transcriptional regulator PgrR, at 514,364 to 515,230 _03215 MPMX19_03216: MPMX19_03216 - Glucose 1-dehydrogenase, at 515,401 to 516,156 _03216 MPMX19_03217: MPMX19_03217 - 2-haloacrylate reductase, at 516,204 to 517,205 _03217 Position (kb) 514 515 516Strain fitness (log2 ratio) -2 -1 0 1 2at 513.516 kb on + strand, within MPMX19_03214at 513.516 kb on + strand, within MPMX19_03214at 513.516 kb on + strand, within MPMX19_03214at 513.516 kb on + strand, within MPMX19_03214at 513.516 kb on + strand, within MPMX19_03214at 513.516 kb on + strand, within MPMX19_03214at 513.516 kb on + strand, within MPMX19_03214at 513.516 kb on + strand, within MPMX19_03214at 513.517 kb on - strand, within MPMX19_03214at 513.517 kb on - strand, within MPMX19_03214at 513.517 kb on - strand, within MPMX19_03214at 513.517 kb on - strand, within MPMX19_03214at 513.517 kb on - strand, within MPMX19_03214at 513.517 kb on - strand, within MPMX19_03214at 513.517 kb on - strand, within MPMX19_03214at 513.517 kb on - strand, within MPMX19_03214at 513.614 kb on + strand, within MPMX19_03214at 513.614 kb on + strand, within MPMX19_03214at 513.614 kb on + strand, within MPMX19_03214at 513.614 kb on + strand, within MPMX19_03214at 513.614 kb on + strand, within MPMX19_03214at 513.614 kb on + strand, within MPMX19_03214at 513.614 kb on + strand, within MPMX19_03214at 513.615 kb on - strand, within MPMX19_03214at 513.615 kb on - strand, within MPMX19_03214at 513.615 kb on - strand, within MPMX19_03214at 513.615 kb on - strand, within MPMX19_03214at 513.615 kb on - strand, within MPMX19_03214at 513.716 kb on + strand, within MPMX19_03214at 513.716 kb on + strand, within MPMX19_03214at 513.716 kb on + strand, within MPMX19_03214at 513.716 kb on + strand, within MPMX19_03214at 513.716 kb on + strand, within MPMX19_03214at 513.716 kb on + strand, within MPMX19_03214at 513.716 kb on + strand, within MPMX19_03214at 513.716 kb on + strand, within MPMX19_03214at 513.716 kb on + strand, within MPMX19_03214at 513.717 kb on - strand, within MPMX19_03214at 513.717 kb on - strand, within MPMX19_03214at 513.717 kb on - strand, within MPMX19_03214at 513.717 kb on - strand, within MPMX19_03214at 513.717 kb on - strand, within MPMX19_03214at 513.911 kb on + strand, within MPMX19_03214at 513.911 kb on + strand, within MPMX19_03214at 513.911 kb on + strand, within MPMX19_03214at 513.911 kb on + strand, within MPMX19_03214at 513.911 kb on + strand, within MPMX19_03214at 513.911 kb on + strand, within MPMX19_03214at 513.911 kb on + strand, within MPMX19_03214at 513.911 kb on + strand, within MPMX19_03214at 513.912 kb on - strand, within MPMX19_03214at 513.912 kb on - strand, within MPMX19_03214at 513.912 kb on - strand, within MPMX19_03214at 513.912 kb on - strand, within MPMX19_03214at 513.912 kb on - strand, within MPMX19_03214at 513.912 kb on - strand, within MPMX19_03214at 513.912 kb on - strand, within MPMX19_03214at 513.912 kb on - strand, within MPMX19_03214at 514.062 kb on - strandat 514.062 kb on - strandat 514.182 kb on - strandat 514.182 kb on - strandat 514.182 kb on - strandat 514.206 kb on + strandat 514.206 kb on + strandat 514.206 kb on + strandat 514.206 kb on + strandat 514.206 kb on + strandat 514.206 kb on + strandat 514.207 kb on - strandat 514.207 kb on - strandat 514.299 kb on + strandat 514.300 kb on - strandat 514.300 kb on - strandat 514.481 kb on + strand, within MPMX19_03215at 514.522 kb on + strand, within MPMX19_03215at 514.522 kb on + strand, within MPMX19_03215at 514.522 kb on + strand, within MPMX19_03215at 514.523 kb on - strand, within MPMX19_03215at 514.641 kb on - strand, within MPMX19_03215at 514.641 kb on - strand, within MPMX19_03215at 514.702 kb on + strand, within MPMX19_03215at 514.776 kb on - strand, within MPMX19_03215at 514.776 kb on - strand, within MPMX19_03215at 514.776 kb on - strand, within MPMX19_03215at 514.776 kb on - strand, within MPMX19_03215at 514.776 kb on - strand, within MPMX19_03215at 514.776 kb on - strand, within MPMX19_03215at 514.776 kb on - strand, within MPMX19_03215at 514.800 kb on - strand, within MPMX19_03215at 514.800 kb on - strand, within MPMX19_03215at 514.800 kb on - strand, within MPMX19_03215at 514.800 kb on - strand, within MPMX19_03215at 514.862 kb on + strand, within MPMX19_03215at 514.862 kb on + strand, within MPMX19_03215at 514.863 kb on - strand, within MPMX19_03215at 514.863 kb on - strand, within MPMX19_03215at 515.105 kb on + strand, within MPMX19_03215at 515.246 kb on + strandat 515.246 kb on + strandat 515.247 kb on - strandat 515.247 kb on - strandat 515.247 kb on - strandat 515.273 kb on + strandat 515.273 kb on + strandat 515.273 kb on + strandat 515.273 kb on + strandat 515.274 kb on - strandat 515.274 kb on - strandat 515.503 kb on + strand, within MPMX19_03216at 515.503 kb on + strand, within MPMX19_03216at 515.503 kb on + strand, within MPMX19_03216at 515.503 kb on + strand, within MPMX19_03216at 515.503 kb on + strand, within MPMX19_03216at 515.503 kb on + strand, within MPMX19_03216at 515.504 kb on - strand, within MPMX19_03216at 515.504 kb on - strand, within MPMX19_03216at 515.504 kb on - strand, within MPMX19_03216at 515.504 kb on - strand, within MPMX19_03216at 515.504 kb on - strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.624 kb on + strand, within MPMX19_03216at 515.625 kb on - strand, within MPMX19_03216at 515.701 kb on - strand, within MPMX19_03216at 515.851 kb on + strand, within MPMX19_03216at 515.852 kb on - strand, within MPMX19_03216at 515.852 kb on - strand, within MPMX19_03216at 516.016 kb on + strand, within MPMX19_03216at 516.016 kb on + strand, within MPMX19_03216at 516.016 kb on + strand, within MPMX19_03216at 516.017 kb on - strand, within MPMX19_03216at 516.017 kb on - strand, within MPMX19_03216at 516.017 kb on - strand, within MPMX19_03216at 516.219 kb on + strandat 516.220 kb on - strandat 516.220 kb on - strandat 516.220 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MGL
remove
513,516 + MPMX19_03214 0.58 -0.1
513,516 + MPMX19_03214 0.58 -1.1
513,516 + MPMX19_03214 0.58 -2.1
513,516 + MPMX19_03214 0.58 +0.4
513,516 + MPMX19_03214 0.58 +0.9
513,516 + MPMX19_03214 0.58 -0.3
513,516 + MPMX19_03214 0.58 -1.5
513,516 + MPMX19_03214 0.58 -1.1
513,517 - MPMX19_03214 0.58 -1.1
513,517 - MPMX19_03214 0.58 -0.2
513,517 - MPMX19_03214 0.58 +0.2
513,517 - MPMX19_03214 0.58 -1.2
513,517 - MPMX19_03214 0.58 -0.4
513,517 - MPMX19_03214 0.58 +0.4
513,517 - MPMX19_03214 0.58 -0.2
513,517 - MPMX19_03214 0.58 -0.3
513,614 + MPMX19_03214 0.65 -1.0
513,614 + MPMX19_03214 0.65 +1.0
513,614 + MPMX19_03214 0.65 -0.5
513,614 + MPMX19_03214 0.65 -0.7
513,614 + MPMX19_03214 0.65 +0.2
513,614 + MPMX19_03214 0.65 -0.6
513,614 + MPMX19_03214 0.65 -0.8
513,615 - MPMX19_03214 0.65 +0.1
513,615 - MPMX19_03214 0.65 -0.6
513,615 - MPMX19_03214 0.65 +0.1
513,615 - MPMX19_03214 0.65 -0.4
513,615 - MPMX19_03214 0.65 +0.6
513,716 + MPMX19_03214 0.72 -2.0
513,716 + MPMX19_03214 0.72 -1.9
513,716 + MPMX19_03214 0.72 -2.0
513,716 + MPMX19_03214 0.72 -1.9
513,716 + MPMX19_03214 0.72 -0.4
513,716 + MPMX19_03214 0.72 -1.2
513,716 + MPMX19_03214 0.72 +0.2
513,716 + MPMX19_03214 0.72 -0.9
513,716 + MPMX19_03214 0.72 -1.3
513,717 - MPMX19_03214 0.72 +0.6
513,717 - MPMX19_03214 0.72 -0.9
513,717 - MPMX19_03214 0.72 -1.1
513,717 - MPMX19_03214 0.72 -2.1
513,717 - MPMX19_03214 0.72 -1.9
513,911 + MPMX19_03214 0.85 +1.1
513,911 + MPMX19_03214 0.85 +2.0
513,911 + MPMX19_03214 0.85 -0.6
513,911 + MPMX19_03214 0.85 -2.1
513,911 + MPMX19_03214 0.85 +0.6
513,911 + MPMX19_03214 0.85 +0.2
513,911 + MPMX19_03214 0.85 +0.2
513,911 + MPMX19_03214 0.85 -0.4
513,912 - MPMX19_03214 0.85 -0.3
513,912 - MPMX19_03214 0.85 -0.2
513,912 - MPMX19_03214 0.85 -1.9
513,912 - MPMX19_03214 0.85 -0.4
513,912 - MPMX19_03214 0.85 +1.2
513,912 - MPMX19_03214 0.85 -1.4
513,912 - MPMX19_03214 0.85 +0.1
513,912 - MPMX19_03214 0.85 +0.1
514,062 - +0.2
514,062 - -0.9
514,182 - +0.2
514,182 - -1.2
514,182 - -1.1
514,206 + -1.4
514,206 + +1.8
514,206 + -0.5
514,206 + -0.9
514,206 + -0.2
514,206 + -0.3
514,207 - -1.5
514,207 - +0.8
514,299 + -0.4
514,300 - +0.6
514,300 - +0.5
514,481 + MPMX19_03215 0.13 +0.8
514,522 + MPMX19_03215 0.18 -0.9
514,522 + MPMX19_03215 0.18 +0.4
514,522 + MPMX19_03215 0.18 +2.4
514,523 - MPMX19_03215 0.18 -0.6
514,641 - MPMX19_03215 0.32 -0.8
514,641 - MPMX19_03215 0.32 -0.0
514,702 + MPMX19_03215 0.39 +0.7
514,776 - MPMX19_03215 0.48 +0.1
514,776 - MPMX19_03215 0.48 +0.1
514,776 - MPMX19_03215 0.48 +0.1
514,776 - MPMX19_03215 0.48 -1.2
514,776 - MPMX19_03215 0.48 -1.1
514,776 - MPMX19_03215 0.48 +0.8
514,776 - MPMX19_03215 0.48 -1.2
514,800 - MPMX19_03215 0.50 -0.4
514,800 - MPMX19_03215 0.50 -0.9
514,800 - MPMX19_03215 0.50 +1.1
514,800 - MPMX19_03215 0.50 +0.8
514,862 + MPMX19_03215 0.57 -2.0
514,862 + MPMX19_03215 0.57 +0.9
514,863 - MPMX19_03215 0.58 -1.9
514,863 - MPMX19_03215 0.58 -1.4
515,105 + MPMX19_03215 0.85 -2.3
515,246 + -1.9
515,246 + -0.9
515,247 - -1.1
515,247 - -0.3
515,247 - -0.8
515,273 + -1.7
515,273 + -1.3
515,273 + -1.2
515,273 + -1.1
515,274 - +1.1
515,274 - -1.3
515,503 + MPMX19_03216 0.13 +0.8
515,503 + MPMX19_03216 0.13 +0.1
515,503 + MPMX19_03216 0.13 -1.8
515,503 + MPMX19_03216 0.13 +0.8
515,503 + MPMX19_03216 0.13 +0.4
515,503 + MPMX19_03216 0.13 -0.9
515,504 - MPMX19_03216 0.14 +0.1
515,504 - MPMX19_03216 0.14 -0.2
515,504 - MPMX19_03216 0.14 -0.8
515,504 - MPMX19_03216 0.14 -1.2
515,504 - MPMX19_03216 0.14 -0.6
515,624 + MPMX19_03216 0.29 -1.1
515,624 + MPMX19_03216 0.29 +1.0
515,624 + MPMX19_03216 0.29 -0.0
515,624 + MPMX19_03216 0.29 +0.2
515,624 + MPMX19_03216 0.29 -1.9
515,624 + MPMX19_03216 0.29 +0.7
515,624 + MPMX19_03216 0.29 -0.4
515,624 + MPMX19_03216 0.29 -1.6
515,624 + MPMX19_03216 0.29 -1.7
515,625 - MPMX19_03216 0.30 -1.6
515,701 - MPMX19_03216 0.40 -1.0
515,851 + MPMX19_03216 0.60 -0.8
515,852 - MPMX19_03216 0.60 -0.2
515,852 - MPMX19_03216 0.60 -2.3
516,016 + MPMX19_03216 0.81 -0.8
516,016 + MPMX19_03216 0.81 -2.0
516,016 + MPMX19_03216 0.81 -0.2
516,017 - MPMX19_03216 0.81 -1.9
516,017 - MPMX19_03216 0.81 +0.6
516,017 - MPMX19_03216 0.81 -0.9
516,219 + -0.0
516,220 - -0.4
516,220 - -1.5
516,220 - -1.0

Or see this region's nucleotide sequence