Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03030

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03029 and MPMX19_03030 overlap by 4 nucleotidesMPMX19_03030 and MPMX19_03031 are separated by 49 nucleotides MPMX19_03029: MPMX19_03029 - Xylose isomerase, at 295,019 to 296,341 _03029 MPMX19_03030: MPMX19_03030 - Xylulose kinase, at 296,338 to 297,789 _03030 MPMX19_03031: MPMX19_03031 - hypothetical protein, at 297,839 to 298,897 _03031 Position (kb) 296 297 298Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 295.563 kb on + strand, within MPMX19_03029at 295.563 kb on + strand, within MPMX19_03029at 295.564 kb on - strand, within MPMX19_03029at 295.564 kb on - strand, within MPMX19_03029at 295.564 kb on - strand, within MPMX19_03029at 295.581 kb on + strand, within MPMX19_03029at 295.582 kb on - strand, within MPMX19_03029at 295.605 kb on + strand, within MPMX19_03029at 295.605 kb on + strand, within MPMX19_03029at 295.605 kb on + strand, within MPMX19_03029at 295.605 kb on + strand, within MPMX19_03029at 295.606 kb on - strand, within MPMX19_03029at 295.606 kb on - strand, within MPMX19_03029at 295.752 kb on + strand, within MPMX19_03029at 295.752 kb on + strand, within MPMX19_03029at 295.752 kb on + strand, within MPMX19_03029at 295.752 kb on + strand, within MPMX19_03029at 295.753 kb on - strand, within MPMX19_03029at 295.753 kb on - strand, within MPMX19_03029at 295.753 kb on - strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.839 kb on + strand, within MPMX19_03029at 295.839 kb on + strand, within MPMX19_03029at 295.839 kb on + strand, within MPMX19_03029at 295.839 kb on + strand, within MPMX19_03029at 295.839 kb on + strand, within MPMX19_03029at 295.840 kb on - strand, within MPMX19_03029at 295.840 kb on - strand, within MPMX19_03029at 295.840 kb on - strand, within MPMX19_03029at 295.840 kb on - strand, within MPMX19_03029at 295.884 kb on + strand, within MPMX19_03029at 295.884 kb on + strand, within MPMX19_03029at 295.884 kb on + strand, within MPMX19_03029at 295.884 kb on + strand, within MPMX19_03029at 295.885 kb on - strand, within MPMX19_03029at 295.885 kb on - strand, within MPMX19_03029at 295.885 kb on - strand, within MPMX19_03029at 295.885 kb on - strand, within MPMX19_03029at 295.885 kb on - strand, within MPMX19_03029at 296.193 kb on + strand, within MPMX19_03029at 296.194 kb on - strand, within MPMX19_03029at 296.194 kb on - strand, within MPMX19_03029at 296.256 kb on + strandat 296.257 kb on - strandat 296.257 kb on - strandat 296.265 kb on + strandat 296.266 kb on - strandat 296.266 kb on - strandat 296.366 kb on + strandat 296.366 kb on + strandat 296.366 kb on + strandat 296.366 kb on + strandat 296.366 kb on + strandat 296.366 kb on + strandat 296.367 kb on - strandat 296.367 kb on - strandat 296.367 kb on - strandat 296.399 kb on + strandat 296.399 kb on + strandat 296.399 kb on + strandat 296.399 kb on + strandat 296.399 kb on + strandat 296.400 kb on - strandat 296.400 kb on - strandat 296.400 kb on - strandat 296.789 kb on + strand, within MPMX19_03030at 296.789 kb on + strand, within MPMX19_03030at 296.790 kb on - strand, within MPMX19_03030at 296.790 kb on - strand, within MPMX19_03030at 296.790 kb on - strand, within MPMX19_03030at 296.790 kb on - strand, within MPMX19_03030at 296.790 kb on - strand, within MPMX19_03030at 296.790 kb on - strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.875 kb on + strandat 297.875 kb on + strandat 297.875 kb on + strandat 297.875 kb on + strandat 297.875 kb on + strandat 297.875 kb on + strandat 297.875 kb on + strandat 297.875 kb on + strandat 297.876 kb on - strandat 297.876 kb on - strandat 297.876 kb on - strandat 297.876 kb on - strandat 297.876 kb on - strandat 297.876 kb on - strandat 297.876 kb on - strandat 297.876 kb on - strandat 297.876 kb on - strandat 298.107 kb on + strand, within MPMX19_03031at 298.107 kb on + strand, within MPMX19_03031at 298.107 kb on + strand, within MPMX19_03031at 298.107 kb on + strand, within MPMX19_03031at 298.107 kb on + strand, within MPMX19_03031at 298.107 kb on + strand, within MPMX19_03031at 298.107 kb on + strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.108 kb on - strand, within MPMX19_03031at 298.216 kb on - strand, within MPMX19_03031at 298.288 kb on + strand, within MPMX19_03031at 298.289 kb on - strand, within MPMX19_03031at 298.289 kb on - strand, within MPMX19_03031at 298.289 kb on - strand, within MPMX19_03031at 298.289 kb on - strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.392 kb on + strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031at 298.393 kb on - strand, within MPMX19_03031

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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295,563 + MPMX19_03029 0.41 -1.1
295,563 + MPMX19_03029 0.41 +0.3
295,564 - MPMX19_03029 0.41 -1.9
295,564 - MPMX19_03029 0.41 +1.0
295,564 - MPMX19_03029 0.41 +0.1
295,581 + MPMX19_03029 0.42 -2.8
295,582 - MPMX19_03029 0.43 +0.1
295,605 + MPMX19_03029 0.44 +0.2
295,605 + MPMX19_03029 0.44 -0.5
295,605 + MPMX19_03029 0.44 -0.6
295,605 + MPMX19_03029 0.44 -0.8
295,606 - MPMX19_03029 0.44 +0.1
295,606 - MPMX19_03029 0.44 -1.5
295,752 + MPMX19_03029 0.55 -1.3
295,752 + MPMX19_03029 0.55 -0.6
295,752 + MPMX19_03029 0.55 -0.1
295,752 + MPMX19_03029 0.55 -0.8
295,753 - MPMX19_03029 0.55 -0.6
295,753 - MPMX19_03029 0.55 -0.3
295,753 - MPMX19_03029 0.55 +0.8
295,779 + MPMX19_03029 0.57 -1.1
295,779 + MPMX19_03029 0.57 -0.6
295,779 + MPMX19_03029 0.57 -1.8
295,779 + MPMX19_03029 0.57 -0.6
295,779 + MPMX19_03029 0.57 +0.1
295,779 + MPMX19_03029 0.57 -0.2
295,779 + MPMX19_03029 0.57 -0.1
295,779 + MPMX19_03029 0.57 -1.3
295,779 + MPMX19_03029 0.57 -1.2
295,779 + MPMX19_03029 0.57 +0.2
295,779 + MPMX19_03029 0.57 -0.3
295,779 + MPMX19_03029 0.57 -0.6
295,780 - MPMX19_03029 0.58 -0.9
295,780 - MPMX19_03029 0.58 +0.6
295,780 - MPMX19_03029 0.58 -1.8
295,780 - MPMX19_03029 0.58 -0.2
295,780 - MPMX19_03029 0.58 +0.3
295,780 - MPMX19_03029 0.58 -2.5
295,780 - MPMX19_03029 0.58 -0.7
295,780 - MPMX19_03029 0.58 -0.8
295,780 - MPMX19_03029 0.58 +0.0
295,780 - MPMX19_03029 0.58 -2.0
295,780 - MPMX19_03029 0.58 -0.9
295,780 - MPMX19_03029 0.58 -0.5
295,839 + MPMX19_03029 0.62 -1.6
295,839 + MPMX19_03029 0.62 +1.0
295,839 + MPMX19_03029 0.62 -1.2
295,839 + MPMX19_03029 0.62 +0.3
295,839 + MPMX19_03029 0.62 +0.3
295,840 - MPMX19_03029 0.62 -0.6
295,840 - MPMX19_03029 0.62 -0.3
295,840 - MPMX19_03029 0.62 -1.6
295,840 - MPMX19_03029 0.62 -1.6
295,884 + MPMX19_03029 0.65 +1.4
295,884 + MPMX19_03029 0.65 +0.8
295,884 + MPMX19_03029 0.65 -0.2
295,884 + MPMX19_03029 0.65 -0.9
295,885 - MPMX19_03029 0.65 -1.6
295,885 - MPMX19_03029 0.65 -0.6
295,885 - MPMX19_03029 0.65 -1.1
295,885 - MPMX19_03029 0.65 -0.4
295,885 - MPMX19_03029 0.65 -0.9
296,193 + MPMX19_03029 0.89 -2.4
296,194 - MPMX19_03029 0.89 +0.4
296,194 - MPMX19_03029 0.89 -0.3
296,256 + -0.8
296,257 - -0.8
296,257 - -1.1
296,265 + +0.1
296,266 - -0.4
296,266 - +0.1
296,366 + -0.2
296,366 + -0.5
296,366 + -0.4
296,366 + -0.7
296,366 + -0.4
296,366 + -0.6
296,367 - +0.4
296,367 - -0.7
296,367 - +0.4
296,399 + +0.1
296,399 + -0.5
296,399 + -0.2
296,399 + -0.3
296,399 + -1.2
296,400 - +0.4
296,400 - -0.1
296,400 - -1.4
296,789 + MPMX19_03030 0.31 +0.2
296,789 + MPMX19_03030 0.31 -1.1
296,790 - MPMX19_03030 0.31 -0.3
296,790 - MPMX19_03030 0.31 -0.1
296,790 - MPMX19_03030 0.31 +1.2
296,790 - MPMX19_03030 0.31 +0.8
296,790 - MPMX19_03030 0.31 -0.7
296,790 - MPMX19_03030 0.31 -1.1
297,320 + MPMX19_03030 0.68 -1.5
297,320 + MPMX19_03030 0.68 +0.1
297,320 + MPMX19_03030 0.68 -0.3
297,320 + MPMX19_03030 0.68 +0.5
297,320 + MPMX19_03030 0.68 -0.5
297,320 + MPMX19_03030 0.68 -1.8
297,320 + MPMX19_03030 0.68 +2.0
297,320 + MPMX19_03030 0.68 -2.4
297,320 + MPMX19_03030 0.68 -0.2
297,321 - MPMX19_03030 0.68 -0.3
297,321 - MPMX19_03030 0.68 -1.2
297,321 - MPMX19_03030 0.68 -0.7
297,321 - MPMX19_03030 0.68 +0.3
297,321 - MPMX19_03030 0.68 -2.1
297,321 - MPMX19_03030 0.68 -1.3
297,321 - MPMX19_03030 0.68 -0.7
297,321 - MPMX19_03030 0.68 -0.8
297,875 + -0.4
297,875 + +0.1
297,875 + +2.8
297,875 + +1.1
297,875 + -0.2
297,875 + +0.1
297,875 + -0.9
297,875 + +1.2
297,876 - -1.1
297,876 - -1.6
297,876 - -0.6
297,876 - -0.2
297,876 - -2.1
297,876 - +0.4
297,876 - -1.1
297,876 - -0.7
297,876 - +0.6
298,107 + MPMX19_03031 0.25 -0.1
298,107 + MPMX19_03031 0.25 +0.8
298,107 + MPMX19_03031 0.25 -0.7
298,107 + MPMX19_03031 0.25 -0.0
298,107 + MPMX19_03031 0.25 +0.5
298,107 + MPMX19_03031 0.25 -0.3
298,107 + MPMX19_03031 0.25 +0.8
298,108 - MPMX19_03031 0.25 -2.3
298,108 - MPMX19_03031 0.25 -1.1
298,108 - MPMX19_03031 0.25 -1.1
298,108 - MPMX19_03031 0.25 -1.7
298,108 - MPMX19_03031 0.25 -1.0
298,108 - MPMX19_03031 0.25 +0.7
298,108 - MPMX19_03031 0.25 +0.2
298,108 - MPMX19_03031 0.25 -1.6
298,108 - MPMX19_03031 0.25 -0.2
298,108 - MPMX19_03031 0.25 +0.1
298,108 - MPMX19_03031 0.25 -1.1
298,108 - MPMX19_03031 0.25 +1.2
298,108 - MPMX19_03031 0.25 +0.2
298,216 - MPMX19_03031 0.36 -1.0
298,288 + MPMX19_03031 0.42 -0.4
298,289 - MPMX19_03031 0.42 +1.4
298,289 - MPMX19_03031 0.42 +0.5
298,289 - MPMX19_03031 0.42 -1.0
298,289 - MPMX19_03031 0.42 +0.1
298,392 + MPMX19_03031 0.52 +0.3
298,392 + MPMX19_03031 0.52 -1.3
298,392 + MPMX19_03031 0.52 -2.0
298,392 + MPMX19_03031 0.52 -0.2
298,392 + MPMX19_03031 0.52 -1.8
298,392 + MPMX19_03031 0.52 -3.0
298,392 + MPMX19_03031 0.52 -0.5
298,392 + MPMX19_03031 0.52 +0.6
298,392 + MPMX19_03031 0.52 -0.1
298,393 - MPMX19_03031 0.52 +0.1
298,393 - MPMX19_03031 0.52 -0.5
298,393 - MPMX19_03031 0.52 +0.6
298,393 - MPMX19_03031 0.52 -0.3
298,393 - MPMX19_03031 0.52 -2.1
298,393 - MPMX19_03031 0.52 -1.9
298,393 - MPMX19_03031 0.52 -0.2
298,393 - MPMX19_03031 0.52 -1.4
298,393 - MPMX19_03031 0.52 -0.8

Or see this region's nucleotide sequence