Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02851

Experiment: MGL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_02850 and MPMX19_02851 are separated by 34 nucleotidesMPMX19_02851 and MPMX19_02852 are separated by 81 nucleotides MPMX19_02850: MPMX19_02850 - Glyceraldehyde-3-phosphate dehydrogenase 1, at 92,886 to 93,908 _02850 MPMX19_02851: MPMX19_02851 - hypothetical protein, at 93,943 to 94,188 _02851 MPMX19_02852: MPMX19_02852 - hypothetical protein, at 94,270 to 95,355 _02852 Position (kb) 93 94 95Strain fitness (log2 ratio) -3 -2 -1 0 1at 92.950 kb on - strandat 92.950 kb on - strandat 93.031 kb on - strand, within MPMX19_02850at 93.031 kb on - strand, within MPMX19_02850at 93.730 kb on - strand, within MPMX19_02850at 93.730 kb on - strand, within MPMX19_02850at 93.840 kb on + strandat 93.840 kb on + strandat 93.840 kb on + strandat 93.840 kb on + strandat 93.840 kb on + strandat 93.840 kb on + strandat 93.840 kb on + strandat 93.841 kb on - strandat 93.841 kb on - strandat 93.841 kb on - strandat 93.841 kb on - strandat 93.906 kb on + strandat 93.906 kb on + strandat 93.906 kb on + strandat 93.906 kb on + strandat 93.906 kb on + strandat 93.906 kb on + strandat 93.907 kb on - strandat 93.907 kb on - strandat 93.907 kb on - strandat 93.907 kb on - strandat 94.024 kb on + strand, within MPMX19_02851at 94.024 kb on + strand, within MPMX19_02851at 94.024 kb on + strand, within MPMX19_02851at 94.025 kb on - strand, within MPMX19_02851at 94.025 kb on - strand, within MPMX19_02851at 94.025 kb on - strand, within MPMX19_02851at 94.025 kb on - strand, within MPMX19_02851at 94.025 kb on - strand, within MPMX19_02851at 94.025 kb on - strand, within MPMX19_02851at 94.271 kb on + strandat 95.033 kb on + strand, within MPMX19_02852at 95.033 kb on + strand, within MPMX19_02852at 95.033 kb on + strand, within MPMX19_02852at 95.034 kb on - strand, within MPMX19_02852at 95.034 kb on - strand, within MPMX19_02852at 95.034 kb on - strand, within MPMX19_02852at 95.034 kb on - strand, within MPMX19_02852at 95.120 kb on + strand, within MPMX19_02852at 95.121 kb on - strand, within MPMX19_02852

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MGL
remove
92,950 - -0.4
92,950 - -2.0
93,031 - MPMX19_02850 0.14 -1.2
93,031 - MPMX19_02850 0.14 -0.4
93,730 - MPMX19_02850 0.83 -0.4
93,730 - MPMX19_02850 0.83 +0.1
93,840 + -0.1
93,840 + -3.1
93,840 + +0.5
93,840 + -0.1
93,840 + -1.1
93,840 + -1.1
93,840 + -0.4
93,841 - -0.6
93,841 - +0.1
93,841 - -0.9
93,841 - -0.3
93,906 + -2.4
93,906 + +0.2
93,906 + +0.0
93,906 + -0.4
93,906 + -0.7
93,906 + -0.5
93,907 - -0.1
93,907 - -0.6
93,907 - +1.0
93,907 - -0.4
94,024 + MPMX19_02851 0.33 +0.6
94,024 + MPMX19_02851 0.33 -0.6
94,024 + MPMX19_02851 0.33 +0.2
94,025 - MPMX19_02851 0.33 -1.0
94,025 - MPMX19_02851 0.33 -0.4
94,025 - MPMX19_02851 0.33 -0.8
94,025 - MPMX19_02851 0.33 -1.6
94,025 - MPMX19_02851 0.33 +0.8
94,025 - MPMX19_02851 0.33 -0.8
94,271 + -1.4
95,033 + MPMX19_02852 0.70 -1.1
95,033 + MPMX19_02852 0.70 -1.2
95,033 + MPMX19_02852 0.70 -0.2
95,034 - MPMX19_02852 0.70 -1.7
95,034 - MPMX19_02852 0.70 +0.0
95,034 - MPMX19_02852 0.70 -0.0
95,034 - MPMX19_02852 0.70 -0.5
95,120 + MPMX19_02852 0.78 -1.3
95,121 - MPMX19_02852 0.78 -0.7

Or see this region's nucleotide sequence