Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02834

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02832 and MPMX19_02833 are separated by 8 nucleotidesMPMX19_02833 and MPMX19_02834 overlap by 4 nucleotidesMPMX19_02834 and MPMX19_02835 overlap by 4 nucleotidesMPMX19_02835 and MPMX19_02836 overlap by 14 nucleotides MPMX19_02832: MPMX19_02832 - putative cystine transporter YijE, at 74,154 to 75,062 _02832 MPMX19_02833: MPMX19_02833 - Polyketide biosynthesis malonyl CoA-acyl carrier protein transacylase PksC, at 75,071 to 75,988 _02833 MPMX19_02834: MPMX19_02834 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 75,985 to 76,860 _02834 MPMX19_02835: MPMX19_02835 - Phosphoribosyl-dephospho-CoA transferase, at 76,857 to 77,525 _02835 MPMX19_02836: MPMX19_02836 - hypothetical protein, at 77,512 to 78,216 _02836 Position (kb) 75 76 77Strain fitness (log2 ratio) -3 -2 -1 0 1at 75.066 kb on + strandat 75.066 kb on + strandat 75.067 kb on - strandat 75.067 kb on - strandat 75.067 kb on - strandat 75.306 kb on + strand, within MPMX19_02833at 75.306 kb on + strand, within MPMX19_02833at 75.306 kb on + strand, within MPMX19_02833at 75.306 kb on + strand, within MPMX19_02833at 75.307 kb on - strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.668 kb on + strand, within MPMX19_02833at 75.669 kb on - strand, within MPMX19_02833at 76.652 kb on + strand, within MPMX19_02834at 76.652 kb on + strand, within MPMX19_02834at 76.652 kb on + strand, within MPMX19_02834at 76.652 kb on + strand, within MPMX19_02834at 76.653 kb on - strand, within MPMX19_02834at 76.653 kb on - strand, within MPMX19_02834at 76.766 kb on + strand, within MPMX19_02834at 76.766 kb on + strand, within MPMX19_02834at 76.767 kb on - strand, within MPMX19_02834at 76.767 kb on - strand, within MPMX19_02834at 76.767 kb on - strand, within MPMX19_02834at 76.767 kb on - strand, within MPMX19_02834at 77.119 kb on + strand, within MPMX19_02835at 77.119 kb on + strand, within MPMX19_02835at 77.119 kb on + strand, within MPMX19_02835at 77.119 kb on + strand, within MPMX19_02835at 77.120 kb on - strand, within MPMX19_02835at 77.120 kb on - strand, within MPMX19_02835at 77.120 kb on - strand, within MPMX19_02835at 77.120 kb on - strand, within MPMX19_02835at 77.158 kb on + strand, within MPMX19_02835at 77.159 kb on - strand, within MPMX19_02835at 77.159 kb on - strand, within MPMX19_02835at 77.159 kb on - strand, within MPMX19_02835at 77.684 kb on + strand, within MPMX19_02836at 77.685 kb on - strand, within MPMX19_02836at 77.685 kb on - strand, within MPMX19_02836at 77.685 kb on - strand, within MPMX19_02836at 77.685 kb on - strand, within MPMX19_02836at 77.685 kb on - strand, within MPMX19_02836at 77.813 kb on + strand, within MPMX19_02836at 77.813 kb on + strand, within MPMX19_02836at 77.814 kb on - strand, within MPMX19_02836at 77.814 kb on - strand, within MPMX19_02836at 77.814 kb on - strand, within MPMX19_02836at 77.814 kb on - strand, within MPMX19_02836at 77.814 kb on - strand, within MPMX19_02836at 77.814 kb on - strand, within MPMX19_02836

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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75,066 + +0.8
75,066 + +0.0
75,067 - +0.4
75,067 - -0.5
75,067 - +1.4
75,306 + MPMX19_02833 0.26 -0.2
75,306 + MPMX19_02833 0.26 +0.0
75,306 + MPMX19_02833 0.26 -0.1
75,306 + MPMX19_02833 0.26 -0.8
75,307 - MPMX19_02833 0.26 -0.9
75,499 + MPMX19_02833 0.47 +0.2
75,499 + MPMX19_02833 0.47 -0.2
75,499 + MPMX19_02833 0.47 -1.8
75,499 + MPMX19_02833 0.47 -0.2
75,499 + MPMX19_02833 0.47 -0.8
75,499 + MPMX19_02833 0.47 -2.5
75,499 + MPMX19_02833 0.47 -1.2
75,499 + MPMX19_02833 0.47 -0.4
75,499 + MPMX19_02833 0.47 -0.8
75,499 + MPMX19_02833 0.47 -1.3
75,499 + MPMX19_02833 0.47 -1.0
75,499 + MPMX19_02833 0.47 -1.1
75,500 - MPMX19_02833 0.47 -2.0
75,500 - MPMX19_02833 0.47 +0.6
75,500 - MPMX19_02833 0.47 +1.2
75,500 - MPMX19_02833 0.47 -0.6
75,500 - MPMX19_02833 0.47 -3.0
75,500 - MPMX19_02833 0.47 -2.3
75,500 - MPMX19_02833 0.47 -1.0
75,500 - MPMX19_02833 0.47 +0.6
75,500 - MPMX19_02833 0.47 -1.2
75,668 + MPMX19_02833 0.65 -1.9
75,669 - MPMX19_02833 0.65 -1.1
76,652 + MPMX19_02834 0.76 -0.6
76,652 + MPMX19_02834 0.76 -1.7
76,652 + MPMX19_02834 0.76 -0.6
76,652 + MPMX19_02834 0.76 -1.7
76,653 - MPMX19_02834 0.76 -1.2
76,653 - MPMX19_02834 0.76 -1.1
76,766 + MPMX19_02834 0.89 -0.2
76,766 + MPMX19_02834 0.89 -0.6
76,767 - MPMX19_02834 0.89 -1.0
76,767 - MPMX19_02834 0.89 -0.1
76,767 - MPMX19_02834 0.89 -1.5
76,767 - MPMX19_02834 0.89 -1.0
77,119 + MPMX19_02835 0.39 -0.6
77,119 + MPMX19_02835 0.39 -0.6
77,119 + MPMX19_02835 0.39 +0.9
77,119 + MPMX19_02835 0.39 +0.9
77,120 - MPMX19_02835 0.39 -0.8
77,120 - MPMX19_02835 0.39 -0.1
77,120 - MPMX19_02835 0.39 -1.5
77,120 - MPMX19_02835 0.39 -0.3
77,158 + MPMX19_02835 0.45 +0.2
77,159 - MPMX19_02835 0.45 -0.1
77,159 - MPMX19_02835 0.45 -1.3
77,159 - MPMX19_02835 0.45 -0.3
77,684 + MPMX19_02836 0.24 -0.1
77,685 - MPMX19_02836 0.25 -0.5
77,685 - MPMX19_02836 0.25 -0.0
77,685 - MPMX19_02836 0.25 -2.4
77,685 - MPMX19_02836 0.25 -0.2
77,685 - MPMX19_02836 0.25 -1.4
77,813 + MPMX19_02836 0.43 -1.5
77,813 + MPMX19_02836 0.43 -2.5
77,814 - MPMX19_02836 0.43 -2.5
77,814 - MPMX19_02836 0.43 -2.2
77,814 - MPMX19_02836 0.43 -2.7
77,814 - MPMX19_02836 0.43 -0.4
77,814 - MPMX19_02836 0.43 -1.1
77,814 - MPMX19_02836 0.43 -1.5

Or see this region's nucleotide sequence