Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02063

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02061 and MPMX19_02062 are separated by 139 nucleotidesMPMX19_02062 and MPMX19_02063 are separated by 51 nucleotidesMPMX19_02063 and MPMX19_02064 are separated by 12 nucleotidesMPMX19_02064 and MPMX19_02065 overlap by 4 nucleotides MPMX19_02061: MPMX19_02061 - Sensor histidine kinase RcsC, at 2,155,185 to 2,157,770 _02061 MPMX19_02062: MPMX19_02062 - Maleylpyruvate isomerase, at 2,157,910 to 2,158,560 _02062 MPMX19_02063: MPMX19_02063 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 2,158,612 to 2,159,316 _02063 MPMX19_02064: MPMX19_02064 - Lipopolysaccharide export system ATP-binding protein LptB, at 2,159,329 to 2,160,153 _02064 MPMX19_02065: MPMX19_02065 - hypothetical protein, at 2,160,150 to 2,161,097 _02065 Position (kb) 2158 2159 2160Strain fitness (log2 ratio) -3 -2 -1 0 1at 2157.655 kb on + strandat 2157.655 kb on + strandat 2157.655 kb on + strandat 2157.655 kb on + strandat 2157.655 kb on + strandat 2157.655 kb on + strandat 2157.655 kb on + strandat 2157.655 kb on + strandat 2157.655 kb on + strandat 2157.656 kb on - strandat 2157.656 kb on - strandat 2157.656 kb on - strandat 2157.656 kb on - strandat 2157.656 kb on - strandat 2157.656 kb on - strandat 2157.694 kb on + strandat 2157.694 kb on + strandat 2157.694 kb on + strandat 2157.694 kb on + strandat 2157.694 kb on + strandat 2157.694 kb on + strandat 2157.694 kb on + strandat 2157.695 kb on - strandat 2157.695 kb on - strandat 2157.695 kb on - strandat 2157.695 kb on - strandat 2157.695 kb on - strandat 2157.695 kb on - strandat 2157.695 kb on - strandat 2157.695 kb on - strandat 2157.695 kb on - strandat 2157.695 kb on - strandat 2157.695 kb on - strandat 2157.695 kb on - strandat 2157.742 kb on + strandat 2157.742 kb on + strandat 2157.742 kb on + strandat 2157.742 kb on + strandat 2157.742 kb on + strandat 2157.742 kb on + strandat 2157.743 kb on - strandat 2157.743 kb on - strandat 2157.743 kb on - strandat 2157.743 kb on - strandat 2157.743 kb on - strandat 2157.743 kb on - strandat 2157.809 kb on + strandat 2157.809 kb on + strandat 2157.809 kb on + strandat 2157.809 kb on + strandat 2157.809 kb on + strandat 2157.809 kb on + strandat 2157.809 kb on + strandat 2157.809 kb on + strandat 2157.810 kb on - strandat 2157.810 kb on - strandat 2157.810 kb on - strandat 2157.810 kb on - strandat 2157.810 kb on - strandat 2157.810 kb on - strandat 2157.810 kb on - strandat 2157.810 kb on - strandat 2157.810 kb on - strandat 2157.811 kb on + strandat 2157.811 kb on + strandat 2157.811 kb on + strandat 2157.838 kb on + strandat 2157.838 kb on + strandat 2158.337 kb on + strand, within MPMX19_02062at 2158.337 kb on + strand, within MPMX19_02062at 2158.337 kb on + strand, within MPMX19_02062at 2158.337 kb on + strand, within MPMX19_02062at 2158.337 kb on + strand, within MPMX19_02062at 2158.337 kb on + strand, within MPMX19_02062at 2158.337 kb on + strand, within MPMX19_02062at 2158.337 kb on + strand, within MPMX19_02062at 2158.337 kb on + strand, within MPMX19_02062at 2158.338 kb on - strand, within MPMX19_02062at 2158.338 kb on - strand, within MPMX19_02062at 2158.338 kb on - strand, within MPMX19_02062at 2158.338 kb on - strand, within MPMX19_02062at 2158.338 kb on - strand, within MPMX19_02062at 2158.338 kb on - strand, within MPMX19_02062at 2158.338 kb on - strand, within MPMX19_02062at 2158.433 kb on + strand, within MPMX19_02062at 2158.433 kb on + strand, within MPMX19_02062at 2158.434 kb on - strand, within MPMX19_02062at 2158.434 kb on - strand, within MPMX19_02062at 2158.523 kb on + strandat 2158.523 kb on + strandat 2158.524 kb on - strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.544 kb on + strandat 2158.545 kb on - strandat 2158.545 kb on - strandat 2158.545 kb on - strandat 2158.545 kb on - strandat 2158.545 kb on - strandat 2158.545 kb on - strandat 2158.545 kb on - strandat 2158.545 kb on - strandat 2158.545 kb on - strandat 2158.545 kb on - strandat 2158.545 kb on - strandat 2158.545 kb on - strandat 2158.545 kb on - strandat 2158.545 kb on - strandat 2158.545 kb on - strandat 2158.545 kb on - strandat 2158.545 kb on - strandat 2158.545 kb on - strandat 2158.545 kb on - strandat 2158.610 kb on + strandat 2158.610 kb on + strandat 2158.610 kb on + strandat 2158.610 kb on + strandat 2158.611 kb on - strandat 2158.611 kb on - strandat 2158.611 kb on - strandat 2158.611 kb on - strandat 2158.611 kb on - strandat 2158.611 kb on - strandat 2158.611 kb on - strandat 2158.611 kb on - strandat 2158.625 kb on + strandat 2158.625 kb on + strandat 2158.625 kb on + strandat 2158.625 kb on + strandat 2158.625 kb on + strandat 2158.625 kb on + strandat 2158.626 kb on - strandat 2158.626 kb on - strandat 2158.626 kb on - strandat 2158.626 kb on - strandat 2158.626 kb on - strandat 2158.626 kb on - strandat 2158.678 kb on + strandat 2158.678 kb on + strandat 2158.678 kb on + strandat 2158.678 kb on + strandat 2158.678 kb on + strandat 2158.678 kb on + strandat 2158.678 kb on + strandat 2158.678 kb on + strandat 2158.679 kb on - strandat 2158.679 kb on - strandat 2158.679 kb on - strandat 2158.679 kb on - strandat 2158.679 kb on - strandat 2158.703 kb on + strand, within MPMX19_02063at 2158.703 kb on + strand, within MPMX19_02063at 2158.703 kb on + strand, within MPMX19_02063at 2158.703 kb on + strand, within MPMX19_02063at 2158.703 kb on + strand, within MPMX19_02063at 2158.704 kb on - strand, within MPMX19_02063at 2158.704 kb on - strand, within MPMX19_02063at 2158.704 kb on - strand, within MPMX19_02063at 2158.964 kb on + strand, within MPMX19_02063at 2158.964 kb on + strand, within MPMX19_02063at 2158.964 kb on + strand, within MPMX19_02063at 2158.965 kb on - strand, within MPMX19_02063at 2159.010 kb on - strand, within MPMX19_02063at 2159.282 kb on + strandat 2159.283 kb on - strandat 2159.283 kb on - strandat 2159.283 kb on - strandat 2159.283 kb on - strandat 2159.283 kb on - strandat 2159.283 kb on - strandat 2159.283 kb on - strandat 2159.283 kb on - strandat 2159.283 kb on - strandat 2159.283 kb on - strandat 2159.283 kb on - strandat 2159.330 kb on + strandat 2159.330 kb on + strandat 2159.330 kb on + strandat 2159.331 kb on - strandat 2159.331 kb on - strandat 2159.331 kb on - strandat 2159.348 kb on + strandat 2159.348 kb on + strandat 2159.349 kb on - strandat 2159.349 kb on - strandat 2159.631 kb on - strand, within MPMX19_02064at 2159.660 kb on + strand, within MPMX19_02064at 2159.660 kb on + strand, within MPMX19_02064at 2159.660 kb on + strand, within MPMX19_02064at 2159.660 kb on + strand, within MPMX19_02064at 2159.660 kb on + strand, within MPMX19_02064at 2159.660 kb on + strand, within MPMX19_02064at 2159.660 kb on + strand, within MPMX19_02064at 2159.660 kb on + strand, within MPMX19_02064at 2159.660 kb on + strand, within MPMX19_02064at 2159.660 kb on + strand, within MPMX19_02064at 2159.660 kb on + strand, within MPMX19_02064at 2159.660 kb on + strand, within MPMX19_02064at 2159.660 kb on + strand, within MPMX19_02064at 2159.660 kb on + strand, within MPMX19_02064at 2159.660 kb on + strand, within MPMX19_02064at 2159.660 kb on + strand, within MPMX19_02064at 2159.660 kb on + strand, within MPMX19_02064at 2159.661 kb on - strand, within MPMX19_02064at 2159.661 kb on - strand, within MPMX19_02064at 2159.661 kb on - strand, within MPMX19_02064at 2159.661 kb on - strand, within MPMX19_02064at 2159.661 kb on - strand, within MPMX19_02064at 2159.661 kb on - strand, within MPMX19_02064at 2159.661 kb on - strand, within MPMX19_02064at 2159.661 kb on - strand, within MPMX19_02064at 2159.661 kb on - strand, within MPMX19_02064at 2159.661 kb on - strand, within MPMX19_02064at 2159.661 kb on - strand, within MPMX19_02064at 2159.661 kb on - strand, within MPMX19_02064at 2159.661 kb on - strand, within MPMX19_02064at 2159.661 kb on - strand, within MPMX19_02064at 2159.661 kb on - strand, within MPMX19_02064at 2159.873 kb on + strand, within MPMX19_02064at 2159.873 kb on + strand, within MPMX19_02064at 2159.933 kb on + strand, within MPMX19_02064at 2159.933 kb on + strand, within MPMX19_02064at 2159.933 kb on + strand, within MPMX19_02064at 2159.933 kb on + strand, within MPMX19_02064at 2159.934 kb on - strand, within MPMX19_02064at 2159.934 kb on - strand, within MPMX19_02064at 2159.934 kb on - strand, within MPMX19_02064at 2159.934 kb on - strand, within MPMX19_02064at 2159.934 kb on - strand, within MPMX19_02064at 2159.934 kb on - strand, within MPMX19_02064at 2159.934 kb on - strand, within MPMX19_02064at 2159.934 kb on - strand, within MPMX19_02064at 2160.256 kb on + strand, within MPMX19_02065at 2160.256 kb on + strand, within MPMX19_02065at 2160.257 kb on - strand, within MPMX19_02065at 2160.257 kb on - strand, within MPMX19_02065at 2160.257 kb on - strand, within MPMX19_02065at 2160.257 kb on - strand, within MPMX19_02065

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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2,157,655 + -0.1
2,157,655 + -0.7
2,157,655 + -1.5
2,157,655 + -0.1
2,157,655 + -0.4
2,157,655 + -0.7
2,157,655 + -1.3
2,157,655 + -2.4
2,157,655 + -0.5
2,157,656 - +0.5
2,157,656 - -0.4
2,157,656 - +0.7
2,157,656 - -0.7
2,157,656 - -1.5
2,157,656 - -0.6
2,157,694 + -0.5
2,157,694 + -2.6
2,157,694 + -0.9
2,157,694 + +0.3
2,157,694 + -0.5
2,157,694 + -0.3
2,157,694 + -0.8
2,157,695 - -0.5
2,157,695 - +0.0
2,157,695 - -0.9
2,157,695 - -0.6
2,157,695 - -0.7
2,157,695 - -0.8
2,157,695 - -0.5
2,157,695 - -0.8
2,157,695 - -0.3
2,157,695 - -0.7
2,157,695 - +0.6
2,157,695 - -0.5
2,157,742 + +0.0
2,157,742 + +0.3
2,157,742 + +1.7
2,157,742 + +0.5
2,157,742 + -1.4
2,157,742 + -0.6
2,157,743 - +0.2
2,157,743 - -0.8
2,157,743 - +0.7
2,157,743 - -1.3
2,157,743 - -1.6
2,157,743 - +0.0
2,157,809 + -1.5
2,157,809 + -0.5
2,157,809 + +0.0
2,157,809 + -1.9
2,157,809 + +0.3
2,157,809 + +0.5
2,157,809 + -0.3
2,157,809 + -0.7
2,157,810 - -0.6
2,157,810 - -0.3
2,157,810 - -0.7
2,157,810 - -0.4
2,157,810 - +0.7
2,157,810 - -0.9
2,157,810 - -1.1
2,157,810 - -0.5
2,157,810 - -0.3
2,157,811 + -0.0
2,157,811 + -2.8
2,157,811 + -1.1
2,157,838 + -0.4
2,157,838 + +1.5
2,158,337 + MPMX19_02062 0.66 -0.3
2,158,337 + MPMX19_02062 0.66 -1.4
2,158,337 + MPMX19_02062 0.66 +1.2
2,158,337 + MPMX19_02062 0.66 -0.4
2,158,337 + MPMX19_02062 0.66 -1.5
2,158,337 + MPMX19_02062 0.66 +0.0
2,158,337 + MPMX19_02062 0.66 +0.0
2,158,337 + MPMX19_02062 0.66 -0.6
2,158,337 + MPMX19_02062 0.66 -2.1
2,158,338 - MPMX19_02062 0.66 -1.0
2,158,338 - MPMX19_02062 0.66 -0.1
2,158,338 - MPMX19_02062 0.66 -1.1
2,158,338 - MPMX19_02062 0.66 +1.3
2,158,338 - MPMX19_02062 0.66 -0.1
2,158,338 - MPMX19_02062 0.66 -1.3
2,158,338 - MPMX19_02062 0.66 -1.8
2,158,433 + MPMX19_02062 0.80 +0.0
2,158,433 + MPMX19_02062 0.80 +0.7
2,158,434 - MPMX19_02062 0.80 +1.1
2,158,434 - MPMX19_02062 0.80 -2.1
2,158,523 + -1.7
2,158,523 + +1.0
2,158,524 - -2.2
2,158,544 + -1.3
2,158,544 + -1.3
2,158,544 + -1.7
2,158,544 + +0.3
2,158,544 + -0.3
2,158,544 + -1.1
2,158,544 + -1.5
2,158,544 + -1.5
2,158,544 + -0.4
2,158,544 + -1.7
2,158,544 + -1.2
2,158,544 + -0.8
2,158,544 + -1.5
2,158,544 + +0.5
2,158,544 + -0.3
2,158,544 + +0.1
2,158,544 + +0.2
2,158,544 + -1.7
2,158,544 + +0.0
2,158,544 + -1.2
2,158,544 + -1.0
2,158,544 + -1.6
2,158,544 + -1.8
2,158,544 + -1.1
2,158,545 - -1.3
2,158,545 - -0.5
2,158,545 - -2.1
2,158,545 - -0.1
2,158,545 - -1.4
2,158,545 - -1.9
2,158,545 - -1.3
2,158,545 - -0.3
2,158,545 - +0.4
2,158,545 - -1.2
2,158,545 - -1.0
2,158,545 - -0.5
2,158,545 - -1.8
2,158,545 - +0.7
2,158,545 - -1.4
2,158,545 - -1.9
2,158,545 - -0.8
2,158,545 - +0.0
2,158,545 - -0.6
2,158,610 + -1.3
2,158,610 + -0.9
2,158,610 + -1.4
2,158,610 + -1.3
2,158,611 - -1.0
2,158,611 - +0.3
2,158,611 - -0.6
2,158,611 - +0.3
2,158,611 - -1.0
2,158,611 - -2.2
2,158,611 - +0.2
2,158,611 - -0.8
2,158,625 + -0.8
2,158,625 + -0.9
2,158,625 + -1.4
2,158,625 + +0.0
2,158,625 + -2.1
2,158,625 + -1.1
2,158,626 - -0.8
2,158,626 - -0.3
2,158,626 - -0.5
2,158,626 - -0.3
2,158,626 - +0.2
2,158,626 - -0.3
2,158,678 + -1.5
2,158,678 + -0.4
2,158,678 + -0.3
2,158,678 + -0.8
2,158,678 + +0.0
2,158,678 + -1.4
2,158,678 + +0.9
2,158,678 + -0.3
2,158,679 - -0.6
2,158,679 - -0.5
2,158,679 - -1.0
2,158,679 - -0.1
2,158,679 - +0.1
2,158,703 + MPMX19_02063 0.13 +0.3
2,158,703 + MPMX19_02063 0.13 +0.3
2,158,703 + MPMX19_02063 0.13 +0.5
2,158,703 + MPMX19_02063 0.13 -1.4
2,158,703 + MPMX19_02063 0.13 -1.1
2,158,704 - MPMX19_02063 0.13 -1.5
2,158,704 - MPMX19_02063 0.13 +0.0
2,158,704 - MPMX19_02063 0.13 +0.0
2,158,964 + MPMX19_02063 0.50 +1.3
2,158,964 + MPMX19_02063 0.50 -0.7
2,158,964 + MPMX19_02063 0.50 -1.1
2,158,965 - MPMX19_02063 0.50 -0.1
2,159,010 - MPMX19_02063 0.56 +0.7
2,159,282 + -0.1
2,159,283 - -0.4
2,159,283 - +0.0
2,159,283 - -0.8
2,159,283 - +0.6
2,159,283 - -2.0
2,159,283 - -1.8
2,159,283 - -1.0
2,159,283 - -0.2
2,159,283 - -0.3
2,159,283 - -1.4
2,159,283 - -1.1
2,159,330 + -1.6
2,159,330 + -1.2
2,159,330 + -0.6
2,159,331 - -2.0
2,159,331 - -1.5
2,159,331 - +0.0
2,159,348 + +0.1
2,159,348 + -0.2
2,159,349 - +0.3
2,159,349 - -1.1
2,159,631 - MPMX19_02064 0.37 -0.1
2,159,660 + MPMX19_02064 0.40 -0.8
2,159,660 + MPMX19_02064 0.40 +0.3
2,159,660 + MPMX19_02064 0.40 +0.5
2,159,660 + MPMX19_02064 0.40 +1.1
2,159,660 + MPMX19_02064 0.40 -0.5
2,159,660 + MPMX19_02064 0.40 +0.2
2,159,660 + MPMX19_02064 0.40 -1.1
2,159,660 + MPMX19_02064 0.40 +0.5
2,159,660 + MPMX19_02064 0.40 -1.5
2,159,660 + MPMX19_02064 0.40 -2.2
2,159,660 + MPMX19_02064 0.40 -1.7
2,159,660 + MPMX19_02064 0.40 -1.0
2,159,660 + MPMX19_02064 0.40 +0.3
2,159,660 + MPMX19_02064 0.40 -0.3
2,159,660 + MPMX19_02064 0.40 +0.0
2,159,660 + MPMX19_02064 0.40 -1.1
2,159,660 + MPMX19_02064 0.40 -0.5
2,159,661 - MPMX19_02064 0.40 -1.1
2,159,661 - MPMX19_02064 0.40 -0.8
2,159,661 - MPMX19_02064 0.40 +0.3
2,159,661 - MPMX19_02064 0.40 -1.4
2,159,661 - MPMX19_02064 0.40 -1.9
2,159,661 - MPMX19_02064 0.40 -1.3
2,159,661 - MPMX19_02064 0.40 -0.7
2,159,661 - MPMX19_02064 0.40 +1.0
2,159,661 - MPMX19_02064 0.40 -1.0
2,159,661 - MPMX19_02064 0.40 -1.9
2,159,661 - MPMX19_02064 0.40 -1.2
2,159,661 - MPMX19_02064 0.40 -1.8
2,159,661 - MPMX19_02064 0.40 -1.0
2,159,661 - MPMX19_02064 0.40 +0.6
2,159,661 - MPMX19_02064 0.40 -1.6
2,159,873 + MPMX19_02064 0.66 +0.0
2,159,873 + MPMX19_02064 0.66 +0.7
2,159,933 + MPMX19_02064 0.73 -1.0
2,159,933 + MPMX19_02064 0.73 -1.2
2,159,933 + MPMX19_02064 0.73 -1.0
2,159,933 + MPMX19_02064 0.73 +1.0
2,159,934 - MPMX19_02064 0.73 -1.3
2,159,934 - MPMX19_02064 0.73 +0.2
2,159,934 - MPMX19_02064 0.73 +0.0
2,159,934 - MPMX19_02064 0.73 +0.3
2,159,934 - MPMX19_02064 0.73 -1.4
2,159,934 - MPMX19_02064 0.73 -1.3
2,159,934 - MPMX19_02064 0.73 +0.3
2,159,934 - MPMX19_02064 0.73 -1.5
2,160,256 + MPMX19_02065 0.11 -1.0
2,160,256 + MPMX19_02065 0.11 -0.4
2,160,257 - MPMX19_02065 0.11 +0.0
2,160,257 - MPMX19_02065 0.11 +0.5
2,160,257 - MPMX19_02065 0.11 -1.8
2,160,257 - MPMX19_02065 0.11 +1.0

Or see this region's nucleotide sequence