Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02061 and MPMX19_02062 are separated by 139 nucleotides MPMX19_02062 and MPMX19_02063 are separated by 51 nucleotides MPMX19_02063 and MPMX19_02064 are separated by 12 nucleotides MPMX19_02064 and MPMX19_02065 overlap by 4 nucleotides
MPMX19_02061: MPMX19_02061 - Sensor histidine kinase RcsC, at 2,155,185 to 2,157,770
_02061
MPMX19_02062: MPMX19_02062 - Maleylpyruvate isomerase, at 2,157,910 to 2,158,560
_02062
MPMX19_02063: MPMX19_02063 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 2,158,612 to 2,159,316
_02063
MPMX19_02064: MPMX19_02064 - Lipopolysaccharide export system ATP-binding protein LptB, at 2,159,329 to 2,160,153
_02064
MPMX19_02065: MPMX19_02065 - hypothetical protein, at 2,160,150 to 2,161,097
_02065
Position (kb)
2158
2159
2160 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2157.655 kb on + strand at 2157.655 kb on + strand at 2157.655 kb on + strand at 2157.655 kb on + strand at 2157.655 kb on + strand at 2157.655 kb on + strand at 2157.655 kb on + strand at 2157.655 kb on + strand at 2157.655 kb on + strand at 2157.656 kb on - strand at 2157.656 kb on - strand at 2157.656 kb on - strand at 2157.656 kb on - strand at 2157.656 kb on - strand at 2157.656 kb on - strand at 2157.694 kb on + strand at 2157.694 kb on + strand at 2157.694 kb on + strand at 2157.694 kb on + strand at 2157.694 kb on + strand at 2157.694 kb on + strand at 2157.694 kb on + strand at 2157.695 kb on - strand at 2157.695 kb on - strand at 2157.695 kb on - strand at 2157.695 kb on - strand at 2157.695 kb on - strand at 2157.695 kb on - strand at 2157.695 kb on - strand at 2157.695 kb on - strand at 2157.695 kb on - strand at 2157.695 kb on - strand at 2157.695 kb on - strand at 2157.695 kb on - strand at 2157.742 kb on + strand at 2157.742 kb on + strand at 2157.742 kb on + strand at 2157.742 kb on + strand at 2157.742 kb on + strand at 2157.742 kb on + strand at 2157.743 kb on - strand at 2157.743 kb on - strand at 2157.743 kb on - strand at 2157.743 kb on - strand at 2157.743 kb on - strand at 2157.743 kb on - strand at 2157.809 kb on + strand at 2157.809 kb on + strand at 2157.809 kb on + strand at 2157.809 kb on + strand at 2157.809 kb on + strand at 2157.809 kb on + strand at 2157.809 kb on + strand at 2157.809 kb on + strand at 2157.810 kb on - strand at 2157.810 kb on - strand at 2157.810 kb on - strand at 2157.810 kb on - strand at 2157.810 kb on - strand at 2157.810 kb on - strand at 2157.810 kb on - strand at 2157.810 kb on - strand at 2157.810 kb on - strand at 2157.811 kb on + strand at 2157.811 kb on + strand at 2157.811 kb on + strand at 2157.838 kb on + strand at 2157.838 kb on + strand at 2158.337 kb on + strand, within MPMX19_02062 at 2158.337 kb on + strand, within MPMX19_02062 at 2158.337 kb on + strand, within MPMX19_02062 at 2158.337 kb on + strand, within MPMX19_02062 at 2158.337 kb on + strand, within MPMX19_02062 at 2158.337 kb on + strand, within MPMX19_02062 at 2158.337 kb on + strand, within MPMX19_02062 at 2158.337 kb on + strand, within MPMX19_02062 at 2158.337 kb on + strand, within MPMX19_02062 at 2158.338 kb on - strand, within MPMX19_02062 at 2158.338 kb on - strand, within MPMX19_02062 at 2158.338 kb on - strand, within MPMX19_02062 at 2158.338 kb on - strand, within MPMX19_02062 at 2158.338 kb on - strand, within MPMX19_02062 at 2158.338 kb on - strand, within MPMX19_02062 at 2158.338 kb on - strand, within MPMX19_02062 at 2158.433 kb on + strand, within MPMX19_02062 at 2158.433 kb on + strand, within MPMX19_02062 at 2158.434 kb on - strand, within MPMX19_02062 at 2158.434 kb on - strand, within MPMX19_02062 at 2158.523 kb on + strand at 2158.523 kb on + strand at 2158.524 kb on - strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.544 kb on + strand at 2158.545 kb on - strand at 2158.545 kb on - strand at 2158.545 kb on - strand at 2158.545 kb on - strand at 2158.545 kb on - strand at 2158.545 kb on - strand at 2158.545 kb on - strand at 2158.545 kb on - strand at 2158.545 kb on - strand at 2158.545 kb on - strand at 2158.545 kb on - strand at 2158.545 kb on - strand at 2158.545 kb on - strand at 2158.545 kb on - strand at 2158.545 kb on - strand at 2158.545 kb on - strand at 2158.545 kb on - strand at 2158.545 kb on - strand at 2158.545 kb on - strand at 2158.610 kb on + strand at 2158.610 kb on + strand at 2158.610 kb on + strand at 2158.610 kb on + strand at 2158.611 kb on - strand at 2158.611 kb on - strand at 2158.611 kb on - strand at 2158.611 kb on - strand at 2158.611 kb on - strand at 2158.611 kb on - strand at 2158.611 kb on - strand at 2158.611 kb on - strand at 2158.625 kb on + strand at 2158.625 kb on + strand at 2158.625 kb on + strand at 2158.625 kb on + strand at 2158.625 kb on + strand at 2158.625 kb on + strand at 2158.626 kb on - strand at 2158.626 kb on - strand at 2158.626 kb on - strand at 2158.626 kb on - strand at 2158.626 kb on - strand at 2158.626 kb on - strand at 2158.678 kb on + strand at 2158.678 kb on + strand at 2158.678 kb on + strand at 2158.678 kb on + strand at 2158.678 kb on + strand at 2158.678 kb on + strand at 2158.678 kb on + strand at 2158.678 kb on + strand at 2158.679 kb on - strand at 2158.679 kb on - strand at 2158.679 kb on - strand at 2158.679 kb on - strand at 2158.679 kb on - strand at 2158.703 kb on + strand, within MPMX19_02063 at 2158.703 kb on + strand, within MPMX19_02063 at 2158.703 kb on + strand, within MPMX19_02063 at 2158.703 kb on + strand, within MPMX19_02063 at 2158.703 kb on + strand, within MPMX19_02063 at 2158.704 kb on - strand, within MPMX19_02063 at 2158.704 kb on - strand, within MPMX19_02063 at 2158.704 kb on - strand, within MPMX19_02063 at 2158.964 kb on + strand, within MPMX19_02063 at 2158.964 kb on + strand, within MPMX19_02063 at 2158.964 kb on + strand, within MPMX19_02063 at 2158.965 kb on - strand, within MPMX19_02063 at 2159.010 kb on - strand, within MPMX19_02063 at 2159.282 kb on + strand at 2159.283 kb on - strand at 2159.283 kb on - strand at 2159.283 kb on - strand at 2159.283 kb on - strand at 2159.283 kb on - strand at 2159.283 kb on - strand at 2159.283 kb on - strand at 2159.283 kb on - strand at 2159.283 kb on - strand at 2159.283 kb on - strand at 2159.283 kb on - strand at 2159.330 kb on + strand at 2159.330 kb on + strand at 2159.330 kb on + strand at 2159.331 kb on - strand at 2159.331 kb on - strand at 2159.331 kb on - strand at 2159.348 kb on + strand at 2159.348 kb on + strand at 2159.349 kb on - strand at 2159.349 kb on - strand at 2159.631 kb on - strand, within MPMX19_02064 at 2159.660 kb on + strand, within MPMX19_02064 at 2159.660 kb on + strand, within MPMX19_02064 at 2159.660 kb on + strand, within MPMX19_02064 at 2159.660 kb on + strand, within MPMX19_02064 at 2159.660 kb on + strand, within MPMX19_02064 at 2159.660 kb on + strand, within MPMX19_02064 at 2159.660 kb on + strand, within MPMX19_02064 at 2159.660 kb on + strand, within MPMX19_02064 at 2159.660 kb on + strand, within MPMX19_02064 at 2159.660 kb on + strand, within MPMX19_02064 at 2159.660 kb on + strand, within MPMX19_02064 at 2159.660 kb on + strand, within MPMX19_02064 at 2159.660 kb on + strand, within MPMX19_02064 at 2159.660 kb on + strand, within MPMX19_02064 at 2159.660 kb on + strand, within MPMX19_02064 at 2159.660 kb on + strand, within MPMX19_02064 at 2159.660 kb on + strand, within MPMX19_02064 at 2159.661 kb on - strand, within MPMX19_02064 at 2159.661 kb on - strand, within MPMX19_02064 at 2159.661 kb on - strand, within MPMX19_02064 at 2159.661 kb on - strand, within MPMX19_02064 at 2159.661 kb on - strand, within MPMX19_02064 at 2159.661 kb on - strand, within MPMX19_02064 at 2159.661 kb on - strand, within MPMX19_02064 at 2159.661 kb on - strand, within MPMX19_02064 at 2159.661 kb on - strand, within MPMX19_02064 at 2159.661 kb on - strand, within MPMX19_02064 at 2159.661 kb on - strand, within MPMX19_02064 at 2159.661 kb on - strand, within MPMX19_02064 at 2159.661 kb on - strand, within MPMX19_02064 at 2159.661 kb on - strand, within MPMX19_02064 at 2159.661 kb on - strand, within MPMX19_02064 at 2159.873 kb on + strand, within MPMX19_02064 at 2159.873 kb on + strand, within MPMX19_02064 at 2159.933 kb on + strand, within MPMX19_02064 at 2159.933 kb on + strand, within MPMX19_02064 at 2159.933 kb on + strand, within MPMX19_02064 at 2159.933 kb on + strand, within MPMX19_02064 at 2159.934 kb on - strand, within MPMX19_02064 at 2159.934 kb on - strand, within MPMX19_02064 at 2159.934 kb on - strand, within MPMX19_02064 at 2159.934 kb on - strand, within MPMX19_02064 at 2159.934 kb on - strand, within MPMX19_02064 at 2159.934 kb on - strand, within MPMX19_02064 at 2159.934 kb on - strand, within MPMX19_02064 at 2159.934 kb on - strand, within MPMX19_02064 at 2160.256 kb on + strand, within MPMX19_02065 at 2160.256 kb on + strand, within MPMX19_02065 at 2160.257 kb on - strand, within MPMX19_02065 at 2160.257 kb on - strand, within MPMX19_02065 at 2160.257 kb on - strand, within MPMX19_02065 at 2160.257 kb on - strand, within MPMX19_02065
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 2,157,655 + -0.1 2,157,655 + -0.7 2,157,655 + -1.5 2,157,655 + -0.1 2,157,655 + -0.4 2,157,655 + -0.7 2,157,655 + -1.3 2,157,655 + -2.4 2,157,655 + -0.5 2,157,656 - +0.5 2,157,656 - -0.4 2,157,656 - +0.7 2,157,656 - -0.7 2,157,656 - -1.5 2,157,656 - -0.6 2,157,694 + -0.5 2,157,694 + -2.6 2,157,694 + -0.9 2,157,694 + +0.3 2,157,694 + -0.5 2,157,694 + -0.3 2,157,694 + -0.8 2,157,695 - -0.5 2,157,695 - +0.0 2,157,695 - -0.9 2,157,695 - -0.6 2,157,695 - -0.7 2,157,695 - -0.8 2,157,695 - -0.5 2,157,695 - -0.8 2,157,695 - -0.3 2,157,695 - -0.7 2,157,695 - +0.6 2,157,695 - -0.5 2,157,742 + +0.0 2,157,742 + +0.3 2,157,742 + +1.7 2,157,742 + +0.5 2,157,742 + -1.4 2,157,742 + -0.6 2,157,743 - +0.2 2,157,743 - -0.8 2,157,743 - +0.7 2,157,743 - -1.3 2,157,743 - -1.6 2,157,743 - +0.0 2,157,809 + -1.5 2,157,809 + -0.5 2,157,809 + +0.0 2,157,809 + -1.9 2,157,809 + +0.3 2,157,809 + +0.5 2,157,809 + -0.3 2,157,809 + -0.7 2,157,810 - -0.6 2,157,810 - -0.3 2,157,810 - -0.7 2,157,810 - -0.4 2,157,810 - +0.7 2,157,810 - -0.9 2,157,810 - -1.1 2,157,810 - -0.5 2,157,810 - -0.3 2,157,811 + -0.0 2,157,811 + -2.8 2,157,811 + -1.1 2,157,838 + -0.4 2,157,838 + +1.5 2,158,337 + MPMX19_02062 0.66 -0.3 2,158,337 + MPMX19_02062 0.66 -1.4 2,158,337 + MPMX19_02062 0.66 +1.2 2,158,337 + MPMX19_02062 0.66 -0.4 2,158,337 + MPMX19_02062 0.66 -1.5 2,158,337 + MPMX19_02062 0.66 +0.0 2,158,337 + MPMX19_02062 0.66 +0.0 2,158,337 + MPMX19_02062 0.66 -0.6 2,158,337 + MPMX19_02062 0.66 -2.1 2,158,338 - MPMX19_02062 0.66 -1.0 2,158,338 - MPMX19_02062 0.66 -0.1 2,158,338 - MPMX19_02062 0.66 -1.1 2,158,338 - MPMX19_02062 0.66 +1.3 2,158,338 - MPMX19_02062 0.66 -0.1 2,158,338 - MPMX19_02062 0.66 -1.3 2,158,338 - MPMX19_02062 0.66 -1.8 2,158,433 + MPMX19_02062 0.80 +0.0 2,158,433 + MPMX19_02062 0.80 +0.7 2,158,434 - MPMX19_02062 0.80 +1.1 2,158,434 - MPMX19_02062 0.80 -2.1 2,158,523 + -1.7 2,158,523 + +1.0 2,158,524 - -2.2 2,158,544 + -1.3 2,158,544 + -1.3 2,158,544 + -1.7 2,158,544 + +0.3 2,158,544 + -0.3 2,158,544 + -1.1 2,158,544 + -1.5 2,158,544 + -1.5 2,158,544 + -0.4 2,158,544 + -1.7 2,158,544 + -1.2 2,158,544 + -0.8 2,158,544 + -1.5 2,158,544 + +0.5 2,158,544 + -0.3 2,158,544 + +0.1 2,158,544 + +0.2 2,158,544 + -1.7 2,158,544 + +0.0 2,158,544 + -1.2 2,158,544 + -1.0 2,158,544 + -1.6 2,158,544 + -1.8 2,158,544 + -1.1 2,158,545 - -1.3 2,158,545 - -0.5 2,158,545 - -2.1 2,158,545 - -0.1 2,158,545 - -1.4 2,158,545 - -1.9 2,158,545 - -1.3 2,158,545 - -0.3 2,158,545 - +0.4 2,158,545 - -1.2 2,158,545 - -1.0 2,158,545 - -0.5 2,158,545 - -1.8 2,158,545 - +0.7 2,158,545 - -1.4 2,158,545 - -1.9 2,158,545 - -0.8 2,158,545 - +0.0 2,158,545 - -0.6 2,158,610 + -1.3 2,158,610 + -0.9 2,158,610 + -1.4 2,158,610 + -1.3 2,158,611 - -1.0 2,158,611 - +0.3 2,158,611 - -0.6 2,158,611 - +0.3 2,158,611 - -1.0 2,158,611 - -2.2 2,158,611 - +0.2 2,158,611 - -0.8 2,158,625 + -0.8 2,158,625 + -0.9 2,158,625 + -1.4 2,158,625 + +0.0 2,158,625 + -2.1 2,158,625 + -1.1 2,158,626 - -0.8 2,158,626 - -0.3 2,158,626 - -0.5 2,158,626 - -0.3 2,158,626 - +0.2 2,158,626 - -0.3 2,158,678 + -1.5 2,158,678 + -0.4 2,158,678 + -0.3 2,158,678 + -0.8 2,158,678 + +0.0 2,158,678 + -1.4 2,158,678 + +0.9 2,158,678 + -0.3 2,158,679 - -0.6 2,158,679 - -0.5 2,158,679 - -1.0 2,158,679 - -0.1 2,158,679 - +0.1 2,158,703 + MPMX19_02063 0.13 +0.3 2,158,703 + MPMX19_02063 0.13 +0.3 2,158,703 + MPMX19_02063 0.13 +0.5 2,158,703 + MPMX19_02063 0.13 -1.4 2,158,703 + MPMX19_02063 0.13 -1.1 2,158,704 - MPMX19_02063 0.13 -1.5 2,158,704 - MPMX19_02063 0.13 +0.0 2,158,704 - MPMX19_02063 0.13 +0.0 2,158,964 + MPMX19_02063 0.50 +1.3 2,158,964 + MPMX19_02063 0.50 -0.7 2,158,964 + MPMX19_02063 0.50 -1.1 2,158,965 - MPMX19_02063 0.50 -0.1 2,159,010 - MPMX19_02063 0.56 +0.7 2,159,282 + -0.1 2,159,283 - -0.4 2,159,283 - +0.0 2,159,283 - -0.8 2,159,283 - +0.6 2,159,283 - -2.0 2,159,283 - -1.8 2,159,283 - -1.0 2,159,283 - -0.2 2,159,283 - -0.3 2,159,283 - -1.4 2,159,283 - -1.1 2,159,330 + -1.6 2,159,330 + -1.2 2,159,330 + -0.6 2,159,331 - -2.0 2,159,331 - -1.5 2,159,331 - +0.0 2,159,348 + +0.1 2,159,348 + -0.2 2,159,349 - +0.3 2,159,349 - -1.1 2,159,631 - MPMX19_02064 0.37 -0.1 2,159,660 + MPMX19_02064 0.40 -0.8 2,159,660 + MPMX19_02064 0.40 +0.3 2,159,660 + MPMX19_02064 0.40 +0.5 2,159,660 + MPMX19_02064 0.40 +1.1 2,159,660 + MPMX19_02064 0.40 -0.5 2,159,660 + MPMX19_02064 0.40 +0.2 2,159,660 + MPMX19_02064 0.40 -1.1 2,159,660 + MPMX19_02064 0.40 +0.5 2,159,660 + MPMX19_02064 0.40 -1.5 2,159,660 + MPMX19_02064 0.40 -2.2 2,159,660 + MPMX19_02064 0.40 -1.7 2,159,660 + MPMX19_02064 0.40 -1.0 2,159,660 + MPMX19_02064 0.40 +0.3 2,159,660 + MPMX19_02064 0.40 -0.3 2,159,660 + MPMX19_02064 0.40 +0.0 2,159,660 + MPMX19_02064 0.40 -1.1 2,159,660 + MPMX19_02064 0.40 -0.5 2,159,661 - MPMX19_02064 0.40 -1.1 2,159,661 - MPMX19_02064 0.40 -0.8 2,159,661 - MPMX19_02064 0.40 +0.3 2,159,661 - MPMX19_02064 0.40 -1.4 2,159,661 - MPMX19_02064 0.40 -1.9 2,159,661 - MPMX19_02064 0.40 -1.3 2,159,661 - MPMX19_02064 0.40 -0.7 2,159,661 - MPMX19_02064 0.40 +1.0 2,159,661 - MPMX19_02064 0.40 -1.0 2,159,661 - MPMX19_02064 0.40 -1.9 2,159,661 - MPMX19_02064 0.40 -1.2 2,159,661 - MPMX19_02064 0.40 -1.8 2,159,661 - MPMX19_02064 0.40 -1.0 2,159,661 - MPMX19_02064 0.40 +0.6 2,159,661 - MPMX19_02064 0.40 -1.6 2,159,873 + MPMX19_02064 0.66 +0.0 2,159,873 + MPMX19_02064 0.66 +0.7 2,159,933 + MPMX19_02064 0.73 -1.0 2,159,933 + MPMX19_02064 0.73 -1.2 2,159,933 + MPMX19_02064 0.73 -1.0 2,159,933 + MPMX19_02064 0.73 +1.0 2,159,934 - MPMX19_02064 0.73 -1.3 2,159,934 - MPMX19_02064 0.73 +0.2 2,159,934 - MPMX19_02064 0.73 +0.0 2,159,934 - MPMX19_02064 0.73 +0.3 2,159,934 - MPMX19_02064 0.73 -1.4 2,159,934 - MPMX19_02064 0.73 -1.3 2,159,934 - MPMX19_02064 0.73 +0.3 2,159,934 - MPMX19_02064 0.73 -1.5 2,160,256 + MPMX19_02065 0.11 -1.0 2,160,256 + MPMX19_02065 0.11 -0.4 2,160,257 - MPMX19_02065 0.11 +0.0 2,160,257 - MPMX19_02065 0.11 +0.5 2,160,257 - MPMX19_02065 0.11 -1.8 2,160,257 - MPMX19_02065 0.11 +1.0
Or see this region's nucleotide sequence