Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00112

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00111 and MPMX19_00112 are separated by 219 nucleotidesMPMX19_00112 and MPMX19_00113 are separated by 51 nucleotidesMPMX19_00113 and MPMX19_00114 overlap by 4 nucleotidesMPMX19_00114 and MPMX19_00115 are separated by 30 nucleotides MPMX19_00111: MPMX19_00111 - Lysine--tRNA ligase, at 121,043 to 122,611 _00111 MPMX19_00112: MPMX19_00112 - Multidrug transporter EmrE, at 122,831 to 123,154 _00112 MPMX19_00113: MPMX19_00113 - HTH-type transcriptional regulator, at 123,206 to 123,544 _00113 MPMX19_00114: MPMX19_00114 - hypothetical protein, at 123,541 to 124,014 _00114 MPMX19_00115: MPMX19_00115 - hypothetical protein, at 124,045 to 126,819 _00115 Position (kb) 122 123 124Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 122.640 kb on - strandat 122.640 kb on - strandat 122.640 kb on - strandat 122.667 kb on - strandat 122.667 kb on - strandat 122.723 kb on + strandat 122.723 kb on + strandat 122.723 kb on + strandat 122.723 kb on + strandat 122.723 kb on + strandat 122.723 kb on + strandat 122.724 kb on - strandat 122.724 kb on - strandat 122.724 kb on - strandat 122.724 kb on - strandat 122.724 kb on - strandat 122.724 kb on - strandat 122.724 kb on - strandat 122.804 kb on + strandat 122.804 kb on + strandat 122.804 kb on + strandat 122.805 kb on - strandat 122.805 kb on - strandat 122.805 kb on - strandat 122.805 kb on - strandat 122.843 kb on + strandat 122.843 kb on + strandat 122.843 kb on + strandat 122.843 kb on + strandat 122.843 kb on + strandat 122.843 kb on + strandat 122.844 kb on - strandat 122.844 kb on - strandat 122.844 kb on - strandat 122.844 kb on - strandat 122.844 kb on - strandat 122.844 kb on - strandat 122.945 kb on + strand, within MPMX19_00112at 122.945 kb on + strand, within MPMX19_00112at 122.945 kb on + strand, within MPMX19_00112at 122.945 kb on + strand, within MPMX19_00112at 122.945 kb on + strand, within MPMX19_00112at 122.945 kb on + strand, within MPMX19_00112at 122.945 kb on + strand, within MPMX19_00112at 122.946 kb on - strand, within MPMX19_00112at 123.005 kb on + strand, within MPMX19_00112at 123.005 kb on + strand, within MPMX19_00112at 123.006 kb on - strand, within MPMX19_00112at 123.152 kb on + strandat 123.152 kb on + strandat 123.895 kb on + strand, within MPMX19_00114at 123.895 kb on + strand, within MPMX19_00114at 123.895 kb on + strand, within MPMX19_00114at 123.895 kb on + strand, within MPMX19_00114at 123.895 kb on + strand, within MPMX19_00114at 123.895 kb on + strand, within MPMX19_00114at 123.895 kb on + strand, within MPMX19_00114at 123.895 kb on + strand, within MPMX19_00114at 123.895 kb on + strand, within MPMX19_00114at 123.895 kb on + strand, within MPMX19_00114at 123.895 kb on + strand, within MPMX19_00114at 123.896 kb on - strand, within MPMX19_00114at 123.896 kb on - strand, within MPMX19_00114at 123.896 kb on - strand, within MPMX19_00114at 123.896 kb on - strand, within MPMX19_00114at 123.896 kb on - strand, within MPMX19_00114at 123.896 kb on - strand, within MPMX19_00114at 123.896 kb on - strand, within MPMX19_00114at 123.896 kb on - strand, within MPMX19_00114at 123.896 kb on - strand, within MPMX19_00114at 123.896 kb on - strand, within MPMX19_00114at 124.012 kb on + strandat 124.012 kb on + strandat 124.012 kb on + strandat 124.012 kb on + strandat 124.012 kb on + strandat 124.012 kb on + strandat 124.013 kb on - strandat 124.013 kb on - strandat 124.013 kb on - strandat 124.013 kb on - strandat 124.013 kb on - strandat 124.013 kb on - strandat 124.013 kb on - strandat 124.013 kb on - strandat 124.029 kb on + strandat 124.029 kb on + strandat 124.029 kb on + strandat 124.030 kb on - strandat 124.030 kb on - strandat 124.030 kb on - strandat 124.046 kb on + strandat 124.046 kb on + strandat 124.046 kb on + strandat 124.046 kb on + strandat 124.046 kb on + strandat 124.046 kb on + strandat 124.046 kb on + strandat 124.046 kb on + strandat 124.046 kb on + strandat 124.046 kb on + strandat 124.046 kb on + strandat 124.047 kb on - strandat 124.047 kb on - strandat 124.047 kb on - strandat 124.047 kb on - strandat 124.047 kb on - strandat 124.047 kb on - strandat 124.047 kb on - strandat 124.047 kb on - strandat 124.047 kb on - strandat 124.047 kb on - strandat 124.047 kb on - strandat 124.047 kb on - strandat 124.124 kb on + strandat 124.124 kb on + strandat 124.124 kb on + strandat 124.124 kb on + strandat 124.124 kb on + strandat 124.124 kb on + strandat 124.124 kb on + strandat 124.124 kb on + strandat 124.124 kb on + strandat 124.124 kb on + strandat 124.125 kb on - strandat 124.125 kb on - strandat 124.125 kb on - strandat 124.125 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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122,640 - -1.3
122,640 - -0.8
122,640 - +1.1
122,667 - +1.1
122,667 - +2.1
122,723 + -2.0
122,723 + -1.5
122,723 + -1.4
122,723 + -0.7
122,723 + -1.5
122,723 + -1.3
122,724 - -0.4
122,724 - -1.4
122,724 - -0.9
122,724 - -0.6
122,724 - +0.1
122,724 - -0.9
122,724 - -0.6
122,804 + -0.8
122,804 + -1.1
122,804 + +0.4
122,805 - +0.7
122,805 - +0.7
122,805 - -0.4
122,805 - -0.6
122,843 + -0.4
122,843 + -1.9
122,843 + +0.6
122,843 + +1.2
122,843 + -0.6
122,843 + -1.5
122,844 - -0.1
122,844 - +0.4
122,844 - -0.4
122,844 - -1.3
122,844 - +2.4
122,844 - -1.8
122,945 + MPMX19_00112 0.35 +0.1
122,945 + MPMX19_00112 0.35 -0.4
122,945 + MPMX19_00112 0.35 +0.1
122,945 + MPMX19_00112 0.35 +0.6
122,945 + MPMX19_00112 0.35 +1.1
122,945 + MPMX19_00112 0.35 -0.9
122,945 + MPMX19_00112 0.35 -2.2
122,946 - MPMX19_00112 0.35 -2.0
123,005 + MPMX19_00112 0.54 -0.7
123,005 + MPMX19_00112 0.54 -0.9
123,006 - MPMX19_00112 0.54 +1.2
123,152 + +1.1
123,152 + -1.7
123,895 + MPMX19_00114 0.75 +0.7
123,895 + MPMX19_00114 0.75 -0.4
123,895 + MPMX19_00114 0.75 -0.4
123,895 + MPMX19_00114 0.75 -0.3
123,895 + MPMX19_00114 0.75 +0.8
123,895 + MPMX19_00114 0.75 -1.7
123,895 + MPMX19_00114 0.75 -0.4
123,895 + MPMX19_00114 0.75 -2.2
123,895 + MPMX19_00114 0.75 -1.2
123,895 + MPMX19_00114 0.75 +0.7
123,895 + MPMX19_00114 0.75 -0.8
123,896 - MPMX19_00114 0.75 +0.1
123,896 - MPMX19_00114 0.75 -0.9
123,896 - MPMX19_00114 0.75 +0.4
123,896 - MPMX19_00114 0.75 -2.9
123,896 - MPMX19_00114 0.75 +0.8
123,896 - MPMX19_00114 0.75 -2.1
123,896 - MPMX19_00114 0.75 -1.3
123,896 - MPMX19_00114 0.75 +0.5
123,896 - MPMX19_00114 0.75 -0.8
123,896 - MPMX19_00114 0.75 +0.4
124,012 + -1.6
124,012 + -1.9
124,012 + -1.3
124,012 + -0.2
124,012 + -1.1
124,012 + -2.4
124,013 - -0.7
124,013 - -0.5
124,013 - -0.4
124,013 - -0.9
124,013 - +0.6
124,013 - +1.4
124,013 - -0.1
124,013 - -0.8
124,029 + -1.5
124,029 + -0.6
124,029 + +1.1
124,030 - -0.2
124,030 - -0.1
124,030 - -0.1
124,046 + +0.7
124,046 + +0.2
124,046 + -0.6
124,046 + -0.8
124,046 + +0.6
124,046 + -0.9
124,046 + -2.0
124,046 + -0.6
124,046 + +0.3
124,046 + -0.0
124,046 + -1.6
124,047 - +0.6
124,047 - +0.7
124,047 - -0.9
124,047 - -1.0
124,047 - -1.1
124,047 - -1.1
124,047 - +0.2
124,047 - -0.8
124,047 - -1.3
124,047 - +0.8
124,047 - +0.4
124,047 - -0.3
124,124 + +0.3
124,124 + -1.1
124,124 + -1.3
124,124 + -1.1
124,124 + -0.8
124,124 + +0.2
124,124 + +0.1
124,124 + -1.6
124,124 + -2.2
124,124 + -1.9
124,125 - -1.3
124,125 - -0.5
124,125 - +0.7
124,125 - +0.2

Or see this region's nucleotide sequence