Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04346

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04345 and OHPLBJKB_04346 are separated by 537 nucleotidesOHPLBJKB_04346 and OHPLBJKB_04347 are separated by 105 nucleotides OHPLBJKB_04345: OHPLBJKB_04345 - Tryptophanase, at 4,568,683 to 4,570,098 _04345 OHPLBJKB_04346: OHPLBJKB_04346 - tRNA modification GTPase MnmE, at 4,570,636 to 4,572,000 _04346 OHPLBJKB_04347: OHPLBJKB_04347 - Membrane protein insertase YidC, at 4,572,106 to 4,573,752 _04347 Position (kb) 4570 4571 4572 4573Strain fitness (log2 ratio) -2 -1 0 1at 4569.638 kb on + strand, within OHPLBJKB_04345at 4569.639 kb on - strand, within OHPLBJKB_04345at 4569.639 kb on - strand, within OHPLBJKB_04345at 4569.639 kb on - strand, within OHPLBJKB_04345at 4569.639 kb on - strand, within OHPLBJKB_04345at 4569.639 kb on - strand, within OHPLBJKB_04345at 4569.645 kb on + strand, within OHPLBJKB_04345at 4569.672 kb on + strand, within OHPLBJKB_04345at 4569.698 kb on + strand, within OHPLBJKB_04345at 4569.699 kb on - strand, within OHPLBJKB_04345at 4569.771 kb on + strand, within OHPLBJKB_04345at 4569.774 kb on - strand, within OHPLBJKB_04345at 4569.878 kb on + strand, within OHPLBJKB_04345at 4569.878 kb on + strand, within OHPLBJKB_04345at 4569.878 kb on + strand, within OHPLBJKB_04345at 4569.879 kb on - strand, within OHPLBJKB_04345at 4569.879 kb on - strand, within OHPLBJKB_04345at 4569.912 kb on + strand, within OHPLBJKB_04345at 4569.913 kb on - strand, within OHPLBJKB_04345at 4569.949 kb on + strand, within OHPLBJKB_04345at 4569.954 kb on - strand, within OHPLBJKB_04345at 4570.035 kb on + strandat 4570.054 kb on - strandat 4570.175 kb on + strandat 4570.178 kb on - strandat 4570.209 kb on + strandat 4570.246 kb on + strandat 4570.376 kb on + strandat 4570.376 kb on + strandat 4570.376 kb on + strandat 4570.379 kb on - strandat 4570.383 kb on - strandat 4570.424 kb on - strandat 4570.638 kb on - strandat 4570.638 kb on - strandat 4570.642 kb on - strandat 4572.083 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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4,569,638 + OHPLBJKB_04345 0.67 +0.4
4,569,639 - OHPLBJKB_04345 0.68 -0.8
4,569,639 - OHPLBJKB_04345 0.68 +0.7
4,569,639 - OHPLBJKB_04345 0.68 -1.1
4,569,639 - OHPLBJKB_04345 0.68 -0.4
4,569,639 - OHPLBJKB_04345 0.68 -0.3
4,569,645 + OHPLBJKB_04345 0.68 -0.7
4,569,672 + OHPLBJKB_04345 0.70 +0.5
4,569,698 + OHPLBJKB_04345 0.72 -2.0
4,569,699 - OHPLBJKB_04345 0.72 -1.0
4,569,771 + OHPLBJKB_04345 0.77 +0.1
4,569,774 - OHPLBJKB_04345 0.77 -0.5
4,569,878 + OHPLBJKB_04345 0.84 -0.6
4,569,878 + OHPLBJKB_04345 0.84 -0.1
4,569,878 + OHPLBJKB_04345 0.84 -1.4
4,569,879 - OHPLBJKB_04345 0.84 +0.1
4,569,879 - OHPLBJKB_04345 0.84 -0.7
4,569,912 + OHPLBJKB_04345 0.87 -0.5
4,569,913 - OHPLBJKB_04345 0.87 +0.3
4,569,949 + OHPLBJKB_04345 0.89 +0.0
4,569,954 - OHPLBJKB_04345 0.90 +0.0
4,570,035 + +0.2
4,570,054 - +0.5
4,570,175 + -0.5
4,570,178 - +0.0
4,570,209 + +0.7
4,570,246 + +0.9
4,570,376 + +1.1
4,570,376 + +0.5
4,570,376 + -0.2
4,570,379 - -0.1
4,570,383 - +0.5
4,570,424 - -0.0
4,570,638 - -0.8
4,570,638 - +0.6
4,570,642 - -0.2
4,572,083 + -0.7

Or see this region's nucleotide sequence