Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04345

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04344 and OHPLBJKB_04345 are separated by 90 nucleotidesOHPLBJKB_04345 and OHPLBJKB_04346 are separated by 537 nucleotides OHPLBJKB_04344: OHPLBJKB_04344 - Low affinity tryptophan permease, at 4,567,345 to 4,568,592 _04344 OHPLBJKB_04345: OHPLBJKB_04345 - Tryptophanase, at 4,568,683 to 4,570,098 _04345 OHPLBJKB_04346: OHPLBJKB_04346 - tRNA modification GTPase MnmE, at 4,570,636 to 4,572,000 _04346 Position (kb) 4568 4569 4570 4571Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4567.714 kb on + strand, within OHPLBJKB_04344at 4567.714 kb on + strand, within OHPLBJKB_04344at 4567.715 kb on - strand, within OHPLBJKB_04344at 4567.715 kb on - strand, within OHPLBJKB_04344at 4567.715 kb on - strand, within OHPLBJKB_04344at 4567.715 kb on - strand, within OHPLBJKB_04344at 4567.715 kb on - strand, within OHPLBJKB_04344at 4567.715 kb on - strand, within OHPLBJKB_04344at 4567.719 kb on + strand, within OHPLBJKB_04344at 4567.856 kb on + strand, within OHPLBJKB_04344at 4567.856 kb on + strand, within OHPLBJKB_04344at 4567.900 kb on + strand, within OHPLBJKB_04344at 4567.901 kb on - strand, within OHPLBJKB_04344at 4567.916 kb on - strand, within OHPLBJKB_04344at 4567.920 kb on + strand, within OHPLBJKB_04344at 4567.920 kb on + strand, within OHPLBJKB_04344at 4567.920 kb on + strand, within OHPLBJKB_04344at 4567.920 kb on + strand, within OHPLBJKB_04344at 4567.920 kb on + strand, within OHPLBJKB_04344at 4567.921 kb on - strand, within OHPLBJKB_04344at 4568.010 kb on + strand, within OHPLBJKB_04344at 4568.010 kb on + strand, within OHPLBJKB_04344at 4568.010 kb on + strand, within OHPLBJKB_04344at 4568.011 kb on - strand, within OHPLBJKB_04344at 4568.011 kb on - strand, within OHPLBJKB_04344at 4568.012 kb on + strand, within OHPLBJKB_04344at 4568.012 kb on + strand, within OHPLBJKB_04344at 4568.021 kb on + strand, within OHPLBJKB_04344at 4568.021 kb on + strand, within OHPLBJKB_04344at 4568.021 kb on + strand, within OHPLBJKB_04344at 4568.022 kb on - strand, within OHPLBJKB_04344at 4568.022 kb on - strand, within OHPLBJKB_04344at 4568.022 kb on - strand, within OHPLBJKB_04344at 4568.067 kb on - strand, within OHPLBJKB_04344at 4568.140 kb on - strand, within OHPLBJKB_04344at 4568.211 kb on + strand, within OHPLBJKB_04344at 4568.211 kb on + strand, within OHPLBJKB_04344at 4568.211 kb on + strand, within OHPLBJKB_04344at 4568.212 kb on - strand, within OHPLBJKB_04344at 4568.229 kb on - strand, within OHPLBJKB_04344at 4568.280 kb on + strand, within OHPLBJKB_04344at 4568.282 kb on + strand, within OHPLBJKB_04344at 4568.282 kb on + strand, within OHPLBJKB_04344at 4568.282 kb on + strand, within OHPLBJKB_04344at 4568.282 kb on + strand, within OHPLBJKB_04344at 4568.283 kb on - strand, within OHPLBJKB_04344at 4568.283 kb on - strand, within OHPLBJKB_04344at 4568.288 kb on + strand, within OHPLBJKB_04344at 4568.288 kb on + strand, within OHPLBJKB_04344at 4568.288 kb on + strand, within OHPLBJKB_04344at 4568.288 kb on + strand, within OHPLBJKB_04344at 4568.288 kb on + strand, within OHPLBJKB_04344at 4568.288 kb on + strand, within OHPLBJKB_04344at 4568.288 kb on + strand, within OHPLBJKB_04344at 4568.289 kb on - strand, within OHPLBJKB_04344at 4568.301 kb on - strand, within OHPLBJKB_04344at 4568.301 kb on - strand, within OHPLBJKB_04344at 4568.301 kb on - strand, within OHPLBJKB_04344at 4568.301 kb on - strand, within OHPLBJKB_04344at 4568.353 kb on + strand, within OHPLBJKB_04344at 4568.410 kb on + strand, within OHPLBJKB_04344at 4568.410 kb on + strand, within OHPLBJKB_04344at 4568.411 kb on - strand, within OHPLBJKB_04344at 4568.503 kb on + strandat 4568.514 kb on + strandat 4568.514 kb on + strandat 4568.514 kb on + strandat 4568.514 kb on + strandat 4568.515 kb on - strandat 4568.515 kb on - strandat 4568.528 kb on - strandat 4568.547 kb on + strandat 4568.605 kb on - strandat 4568.635 kb on + strandat 4568.635 kb on + strandat 4568.636 kb on - strandat 4568.680 kb on + strandat 4568.680 kb on + strandat 4568.720 kb on - strandat 4568.732 kb on + strandat 4568.805 kb on + strandat 4568.806 kb on - strandat 4568.817 kb on + strandat 4568.817 kb on + strandat 4568.817 kb on + strandat 4568.817 kb on + strandat 4568.818 kb on - strandat 4568.818 kb on - strandat 4568.818 kb on - strandat 4568.819 kb on + strandat 4568.819 kb on + strandat 4568.820 kb on - strandat 4568.820 kb on - strandat 4568.941 kb on - strand, within OHPLBJKB_04345at 4568.942 kb on + strand, within OHPLBJKB_04345at 4568.943 kb on - strand, within OHPLBJKB_04345at 4568.943 kb on - strand, within OHPLBJKB_04345at 4569.003 kb on + strand, within OHPLBJKB_04345at 4569.080 kb on + strand, within OHPLBJKB_04345at 4569.080 kb on + strand, within OHPLBJKB_04345at 4569.081 kb on - strand, within OHPLBJKB_04345at 4569.081 kb on - strand, within OHPLBJKB_04345at 4569.081 kb on - strand, within OHPLBJKB_04345at 4569.086 kb on - strand, within OHPLBJKB_04345at 4569.102 kb on - strand, within OHPLBJKB_04345at 4569.131 kb on + strand, within OHPLBJKB_04345at 4569.132 kb on - strand, within OHPLBJKB_04345at 4569.140 kb on - strand, within OHPLBJKB_04345at 4569.179 kb on + strand, within OHPLBJKB_04345at 4569.179 kb on + strand, within OHPLBJKB_04345at 4569.180 kb on - strand, within OHPLBJKB_04345at 4569.227 kb on + strand, within OHPLBJKB_04345at 4569.228 kb on - strand, within OHPLBJKB_04345at 4569.228 kb on - strand, within OHPLBJKB_04345at 4569.228 kb on - strand, within OHPLBJKB_04345at 4569.320 kb on + strand, within OHPLBJKB_04345at 4569.320 kb on + strand, within OHPLBJKB_04345at 4569.321 kb on - strand, within OHPLBJKB_04345at 4569.327 kb on - strand, within OHPLBJKB_04345at 4569.365 kb on + strand, within OHPLBJKB_04345at 4569.366 kb on - strand, within OHPLBJKB_04345at 4569.366 kb on - strand, within OHPLBJKB_04345at 4569.392 kb on + strand, within OHPLBJKB_04345at 4569.424 kb on + strand, within OHPLBJKB_04345at 4569.458 kb on + strand, within OHPLBJKB_04345at 4569.459 kb on - strand, within OHPLBJKB_04345at 4569.469 kb on + strand, within OHPLBJKB_04345at 4569.508 kb on - strand, within OHPLBJKB_04345at 4569.528 kb on + strand, within OHPLBJKB_04345at 4569.529 kb on - strand, within OHPLBJKB_04345at 4569.530 kb on + strand, within OHPLBJKB_04345at 4569.530 kb on + strand, within OHPLBJKB_04345at 4569.530 kb on + strand, within OHPLBJKB_04345at 4569.530 kb on + strand, within OHPLBJKB_04345at 4569.530 kb on + strand, within OHPLBJKB_04345at 4569.530 kb on + strand, within OHPLBJKB_04345at 4569.530 kb on + strand, within OHPLBJKB_04345at 4569.530 kb on + strand, within OHPLBJKB_04345at 4569.531 kb on - strand, within OHPLBJKB_04345at 4569.531 kb on - strand, within OHPLBJKB_04345at 4569.531 kb on - strand, within OHPLBJKB_04345at 4569.531 kb on - strand, within OHPLBJKB_04345at 4569.531 kb on - strand, within OHPLBJKB_04345at 4569.531 kb on - strand, within OHPLBJKB_04345at 4569.540 kb on + strand, within OHPLBJKB_04345at 4569.571 kb on + strand, within OHPLBJKB_04345at 4569.571 kb on + strand, within OHPLBJKB_04345at 4569.572 kb on - strand, within OHPLBJKB_04345at 4569.598 kb on - strand, within OHPLBJKB_04345at 4569.606 kb on - strand, within OHPLBJKB_04345at 4569.638 kb on + strand, within OHPLBJKB_04345at 4569.639 kb on - strand, within OHPLBJKB_04345at 4569.639 kb on - strand, within OHPLBJKB_04345at 4569.639 kb on - strand, within OHPLBJKB_04345at 4569.639 kb on - strand, within OHPLBJKB_04345at 4569.639 kb on - strand, within OHPLBJKB_04345at 4569.645 kb on + strand, within OHPLBJKB_04345at 4569.672 kb on + strand, within OHPLBJKB_04345at 4569.698 kb on + strand, within OHPLBJKB_04345at 4569.699 kb on - strand, within OHPLBJKB_04345at 4569.771 kb on + strand, within OHPLBJKB_04345at 4569.774 kb on - strand, within OHPLBJKB_04345at 4569.878 kb on + strand, within OHPLBJKB_04345at 4569.878 kb on + strand, within OHPLBJKB_04345at 4569.878 kb on + strand, within OHPLBJKB_04345at 4569.879 kb on - strand, within OHPLBJKB_04345at 4569.879 kb on - strand, within OHPLBJKB_04345at 4569.912 kb on + strand, within OHPLBJKB_04345at 4569.913 kb on - strand, within OHPLBJKB_04345at 4569.949 kb on + strand, within OHPLBJKB_04345at 4569.954 kb on - strand, within OHPLBJKB_04345at 4570.035 kb on + strandat 4570.054 kb on - strandat 4570.175 kb on + strandat 4570.178 kb on - strandat 4570.209 kb on + strandat 4570.246 kb on + strandat 4570.376 kb on + strandat 4570.376 kb on + strandat 4570.376 kb on + strandat 4570.379 kb on - strandat 4570.383 kb on - strandat 4570.424 kb on - strandat 4570.638 kb on - strandat 4570.638 kb on - strandat 4570.642 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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4,567,714 + OHPLBJKB_04344 0.30 -0.4
4,567,714 + OHPLBJKB_04344 0.30 +0.4
4,567,715 - OHPLBJKB_04344 0.30 +0.1
4,567,715 - OHPLBJKB_04344 0.30 +0.7
4,567,715 - OHPLBJKB_04344 0.30 +2.7
4,567,715 - OHPLBJKB_04344 0.30 -1.9
4,567,715 - OHPLBJKB_04344 0.30 -0.6
4,567,715 - OHPLBJKB_04344 0.30 +0.3
4,567,719 + OHPLBJKB_04344 0.30 -0.1
4,567,856 + OHPLBJKB_04344 0.41 -0.6
4,567,856 + OHPLBJKB_04344 0.41 +0.0
4,567,900 + OHPLBJKB_04344 0.44 -2.9
4,567,901 - OHPLBJKB_04344 0.45 -0.2
4,567,916 - OHPLBJKB_04344 0.46 +0.9
4,567,920 + OHPLBJKB_04344 0.46 -0.5
4,567,920 + OHPLBJKB_04344 0.46 +0.9
4,567,920 + OHPLBJKB_04344 0.46 +0.2
4,567,920 + OHPLBJKB_04344 0.46 -1.2
4,567,920 + OHPLBJKB_04344 0.46 +0.3
4,567,921 - OHPLBJKB_04344 0.46 +0.4
4,568,010 + OHPLBJKB_04344 0.53 -0.5
4,568,010 + OHPLBJKB_04344 0.53 -0.1
4,568,010 + OHPLBJKB_04344 0.53 +0.6
4,568,011 - OHPLBJKB_04344 0.53 -0.8
4,568,011 - OHPLBJKB_04344 0.53 +0.3
4,568,012 + OHPLBJKB_04344 0.53 +0.9
4,568,012 + OHPLBJKB_04344 0.53 -1.3
4,568,021 + OHPLBJKB_04344 0.54 -0.0
4,568,021 + OHPLBJKB_04344 0.54 +0.1
4,568,021 + OHPLBJKB_04344 0.54 +0.1
4,568,022 - OHPLBJKB_04344 0.54 -0.4
4,568,022 - OHPLBJKB_04344 0.54 -0.7
4,568,022 - OHPLBJKB_04344 0.54 +0.5
4,568,067 - OHPLBJKB_04344 0.58 +0.8
4,568,140 - OHPLBJKB_04344 0.64 -0.1
4,568,211 + OHPLBJKB_04344 0.69 -1.1
4,568,211 + OHPLBJKB_04344 0.69 +0.1
4,568,211 + OHPLBJKB_04344 0.69 +0.1
4,568,212 - OHPLBJKB_04344 0.69 -1.2
4,568,229 - OHPLBJKB_04344 0.71 +0.4
4,568,280 + OHPLBJKB_04344 0.75 -0.3
4,568,282 + OHPLBJKB_04344 0.75 -0.4
4,568,282 + OHPLBJKB_04344 0.75 -1.5
4,568,282 + OHPLBJKB_04344 0.75 -0.5
4,568,282 + OHPLBJKB_04344 0.75 +0.8
4,568,283 - OHPLBJKB_04344 0.75 -0.1
4,568,283 - OHPLBJKB_04344 0.75 +0.3
4,568,288 + OHPLBJKB_04344 0.76 +0.2
4,568,288 + OHPLBJKB_04344 0.76 -0.3
4,568,288 + OHPLBJKB_04344 0.76 -0.1
4,568,288 + OHPLBJKB_04344 0.76 +0.3
4,568,288 + OHPLBJKB_04344 0.76 -0.7
4,568,288 + OHPLBJKB_04344 0.76 -0.9
4,568,288 + OHPLBJKB_04344 0.76 +1.2
4,568,289 - OHPLBJKB_04344 0.76 +0.7
4,568,301 - OHPLBJKB_04344 0.77 -1.8
4,568,301 - OHPLBJKB_04344 0.77 +0.2
4,568,301 - OHPLBJKB_04344 0.77 +0.2
4,568,301 - OHPLBJKB_04344 0.77 -0.6
4,568,353 + OHPLBJKB_04344 0.81 -0.7
4,568,410 + OHPLBJKB_04344 0.85 +0.7
4,568,410 + OHPLBJKB_04344 0.85 +0.3
4,568,411 - OHPLBJKB_04344 0.85 +0.6
4,568,503 + +0.3
4,568,514 + -0.3
4,568,514 + +0.2
4,568,514 + -0.4
4,568,514 + -0.1
4,568,515 - -0.3
4,568,515 - -0.0
4,568,528 - -0.2
4,568,547 + +0.3
4,568,605 - +1.0
4,568,635 + +0.1
4,568,635 + +0.0
4,568,636 - +0.7
4,568,680 + -0.1
4,568,680 + -0.3
4,568,720 - -0.3
4,568,732 + -0.7
4,568,805 + -0.9
4,568,806 - +0.4
4,568,817 + -0.8
4,568,817 + +0.0
4,568,817 + +0.3
4,568,817 + -1.3
4,568,818 - -0.1
4,568,818 - +0.3
4,568,818 - +0.1
4,568,819 + +0.2
4,568,819 + +0.0
4,568,820 - +0.2
4,568,820 - -0.2
4,568,941 - OHPLBJKB_04345 0.18 -0.4
4,568,942 + OHPLBJKB_04345 0.18 -1.0
4,568,943 - OHPLBJKB_04345 0.18 +0.0
4,568,943 - OHPLBJKB_04345 0.18 -0.5
4,569,003 + OHPLBJKB_04345 0.23 -0.4
4,569,080 + OHPLBJKB_04345 0.28 +0.3
4,569,080 + OHPLBJKB_04345 0.28 +0.0
4,569,081 - OHPLBJKB_04345 0.28 -0.3
4,569,081 - OHPLBJKB_04345 0.28 +0.4
4,569,081 - OHPLBJKB_04345 0.28 -0.8
4,569,086 - OHPLBJKB_04345 0.28 -2.0
4,569,102 - OHPLBJKB_04345 0.30 -0.3
4,569,131 + OHPLBJKB_04345 0.32 +0.1
4,569,132 - OHPLBJKB_04345 0.32 +1.0
4,569,140 - OHPLBJKB_04345 0.32 +0.6
4,569,179 + OHPLBJKB_04345 0.35 -1.0
4,569,179 + OHPLBJKB_04345 0.35 -0.1
4,569,180 - OHPLBJKB_04345 0.35 -1.1
4,569,227 + OHPLBJKB_04345 0.38 +0.1
4,569,228 - OHPLBJKB_04345 0.38 -1.4
4,569,228 - OHPLBJKB_04345 0.38 +0.5
4,569,228 - OHPLBJKB_04345 0.38 -0.6
4,569,320 + OHPLBJKB_04345 0.45 +0.5
4,569,320 + OHPLBJKB_04345 0.45 +0.3
4,569,321 - OHPLBJKB_04345 0.45 +0.8
4,569,327 - OHPLBJKB_04345 0.45 +0.6
4,569,365 + OHPLBJKB_04345 0.48 +1.0
4,569,366 - OHPLBJKB_04345 0.48 -0.3
4,569,366 - OHPLBJKB_04345 0.48 -0.1
4,569,392 + OHPLBJKB_04345 0.50 -0.9
4,569,424 + OHPLBJKB_04345 0.52 -0.1
4,569,458 + OHPLBJKB_04345 0.55 -1.4
4,569,459 - OHPLBJKB_04345 0.55 -2.2
4,569,469 + OHPLBJKB_04345 0.56 +0.2
4,569,508 - OHPLBJKB_04345 0.58 +0.1
4,569,528 + OHPLBJKB_04345 0.60 -0.0
4,569,529 - OHPLBJKB_04345 0.60 -0.8
4,569,530 + OHPLBJKB_04345 0.60 -0.7
4,569,530 + OHPLBJKB_04345 0.60 -1.3
4,569,530 + OHPLBJKB_04345 0.60 -0.4
4,569,530 + OHPLBJKB_04345 0.60 -2.1
4,569,530 + OHPLBJKB_04345 0.60 -0.0
4,569,530 + OHPLBJKB_04345 0.60 -0.2
4,569,530 + OHPLBJKB_04345 0.60 -0.0
4,569,530 + OHPLBJKB_04345 0.60 -0.7
4,569,531 - OHPLBJKB_04345 0.60 +0.3
4,569,531 - OHPLBJKB_04345 0.60 -0.5
4,569,531 - OHPLBJKB_04345 0.60 -2.3
4,569,531 - OHPLBJKB_04345 0.60 -0.2
4,569,531 - OHPLBJKB_04345 0.60 +0.1
4,569,531 - OHPLBJKB_04345 0.60 +0.7
4,569,540 + OHPLBJKB_04345 0.61 +0.2
4,569,571 + OHPLBJKB_04345 0.63 -0.6
4,569,571 + OHPLBJKB_04345 0.63 -0.1
4,569,572 - OHPLBJKB_04345 0.63 +1.1
4,569,598 - OHPLBJKB_04345 0.65 +0.7
4,569,606 - OHPLBJKB_04345 0.65 +0.2
4,569,638 + OHPLBJKB_04345 0.67 +0.4
4,569,639 - OHPLBJKB_04345 0.68 -0.8
4,569,639 - OHPLBJKB_04345 0.68 +0.7
4,569,639 - OHPLBJKB_04345 0.68 -1.1
4,569,639 - OHPLBJKB_04345 0.68 -0.4
4,569,639 - OHPLBJKB_04345 0.68 -0.3
4,569,645 + OHPLBJKB_04345 0.68 -0.7
4,569,672 + OHPLBJKB_04345 0.70 +0.5
4,569,698 + OHPLBJKB_04345 0.72 -2.0
4,569,699 - OHPLBJKB_04345 0.72 -1.0
4,569,771 + OHPLBJKB_04345 0.77 +0.1
4,569,774 - OHPLBJKB_04345 0.77 -0.5
4,569,878 + OHPLBJKB_04345 0.84 -0.6
4,569,878 + OHPLBJKB_04345 0.84 -0.1
4,569,878 + OHPLBJKB_04345 0.84 -1.4
4,569,879 - OHPLBJKB_04345 0.84 +0.1
4,569,879 - OHPLBJKB_04345 0.84 -0.7
4,569,912 + OHPLBJKB_04345 0.87 -0.5
4,569,913 - OHPLBJKB_04345 0.87 +0.3
4,569,949 + OHPLBJKB_04345 0.89 +0.0
4,569,954 - OHPLBJKB_04345 0.90 +0.0
4,570,035 + +0.2
4,570,054 - +0.5
4,570,175 + -0.5
4,570,178 - +0.0
4,570,209 + +0.7
4,570,246 + +0.9
4,570,376 + +1.1
4,570,376 + +0.5
4,570,376 + -0.2
4,570,379 - -0.1
4,570,383 - +0.5
4,570,424 - -0.0
4,570,638 - -0.8
4,570,638 - +0.6
4,570,642 - -0.2

Or see this region's nucleotide sequence