Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04010

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04009 and OHPLBJKB_04010 are separated by 74 nucleotidesOHPLBJKB_04010 and OHPLBJKB_04011 are separated by 176 nucleotidesOHPLBJKB_04011 and OHPLBJKB_04012 are separated by 92 nucleotides OHPLBJKB_04009: OHPLBJKB_04009 - Maltoporin, at 4,204,945 to 4,206,282 _04009 OHPLBJKB_04010: OHPLBJKB_04010 - Maltose/maltodextrin import ATP-binding protein MalK, at 4,206,357 to 4,207,472 _04010 OHPLBJKB_04011: OHPLBJKB_04011 - hypothetical protein, at 4,207,649 to 4,207,744 _04011 OHPLBJKB_04012: OHPLBJKB_04012 - Maltose-binding periplasmic protein, at 4,207,837 to 4,209,027 _04012 Position (kb) 4206 4207 4208Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4205.424 kb on + strand, within OHPLBJKB_04009at 4205.505 kb on + strand, within OHPLBJKB_04009at 4205.554 kb on - strand, within OHPLBJKB_04009at 4205.606 kb on + strand, within OHPLBJKB_04009at 4205.606 kb on + strand, within OHPLBJKB_04009at 4205.607 kb on - strand, within OHPLBJKB_04009at 4205.610 kb on + strand, within OHPLBJKB_04009at 4205.611 kb on - strand, within OHPLBJKB_04009at 4205.650 kb on + strand, within OHPLBJKB_04009at 4205.651 kb on - strand, within OHPLBJKB_04009at 4205.722 kb on - strand, within OHPLBJKB_04009at 4205.722 kb on - strand, within OHPLBJKB_04009at 4205.723 kb on + strand, within OHPLBJKB_04009at 4205.723 kb on + strand, within OHPLBJKB_04009at 4205.723 kb on + strand, within OHPLBJKB_04009at 4205.723 kb on + strand, within OHPLBJKB_04009at 4205.723 kb on + strand, within OHPLBJKB_04009at 4205.729 kb on + strand, within OHPLBJKB_04009at 4205.729 kb on + strand, within OHPLBJKB_04009at 4205.729 kb on + strand, within OHPLBJKB_04009at 4205.729 kb on + strand, within OHPLBJKB_04009at 4205.729 kb on + strand, within OHPLBJKB_04009at 4205.729 kb on + strand, within OHPLBJKB_04009at 4205.730 kb on - strand, within OHPLBJKB_04009at 4205.730 kb on - strand, within OHPLBJKB_04009at 4205.730 kb on - strand, within OHPLBJKB_04009at 4205.730 kb on - strand, within OHPLBJKB_04009at 4205.730 kb on - strand, within OHPLBJKB_04009at 4205.730 kb on - strand, within OHPLBJKB_04009at 4205.733 kb on + strand, within OHPLBJKB_04009at 4205.733 kb on + strand, within OHPLBJKB_04009at 4205.733 kb on + strand, within OHPLBJKB_04009at 4205.734 kb on - strand, within OHPLBJKB_04009at 4205.734 kb on - strand, within OHPLBJKB_04009at 4205.734 kb on - strand, within OHPLBJKB_04009at 4205.871 kb on + strand, within OHPLBJKB_04009at 4205.871 kb on + strand, within OHPLBJKB_04009at 4205.871 kb on + strand, within OHPLBJKB_04009at 4205.871 kb on + strand, within OHPLBJKB_04009at 4205.871 kb on + strand, within OHPLBJKB_04009at 4205.891 kb on + strand, within OHPLBJKB_04009at 4205.891 kb on + strand, within OHPLBJKB_04009at 4205.892 kb on - strand, within OHPLBJKB_04009at 4205.892 kb on - strand, within OHPLBJKB_04009at 4205.892 kb on - strand, within OHPLBJKB_04009at 4205.892 kb on - strand, within OHPLBJKB_04009at 4205.901 kb on + strand, within OHPLBJKB_04009at 4205.901 kb on + strand, within OHPLBJKB_04009at 4205.982 kb on + strand, within OHPLBJKB_04009at 4206.024 kb on + strand, within OHPLBJKB_04009at 4206.035 kb on + strand, within OHPLBJKB_04009at 4206.035 kb on + strand, within OHPLBJKB_04009at 4206.089 kb on + strand, within OHPLBJKB_04009at 4206.090 kb on - strand, within OHPLBJKB_04009at 4206.090 kb on - strand, within OHPLBJKB_04009at 4206.117 kb on - strand, within OHPLBJKB_04009at 4206.120 kb on + strand, within OHPLBJKB_04009at 4206.120 kb on + strand, within OHPLBJKB_04009at 4206.121 kb on - strand, within OHPLBJKB_04009at 4206.233 kb on - strandat 4206.276 kb on + strandat 4206.276 kb on + strandat 4206.276 kb on + strandat 4206.277 kb on - strandat 4206.288 kb on + strandat 4206.288 kb on + strandat 4206.288 kb on + strandat 4206.289 kb on - strandat 4206.462 kb on + strandat 4206.487 kb on + strand, within OHPLBJKB_04010at 4206.604 kb on - strand, within OHPLBJKB_04010at 4206.604 kb on - strand, within OHPLBJKB_04010at 4206.632 kb on + strand, within OHPLBJKB_04010at 4206.632 kb on + strand, within OHPLBJKB_04010at 4206.633 kb on - strand, within OHPLBJKB_04010at 4206.633 kb on - strand, within OHPLBJKB_04010at 4206.633 kb on - strand, within OHPLBJKB_04010at 4206.741 kb on + strand, within OHPLBJKB_04010at 4206.809 kb on - strand, within OHPLBJKB_04010at 4206.809 kb on - strand, within OHPLBJKB_04010at 4206.907 kb on + strand, within OHPLBJKB_04010at 4206.908 kb on - strand, within OHPLBJKB_04010at 4207.011 kb on + strand, within OHPLBJKB_04010at 4207.011 kb on + strand, within OHPLBJKB_04010at 4207.012 kb on - strand, within OHPLBJKB_04010at 4207.187 kb on + strand, within OHPLBJKB_04010at 4207.187 kb on + strand, within OHPLBJKB_04010at 4207.198 kb on - strand, within OHPLBJKB_04010at 4207.214 kb on - strand, within OHPLBJKB_04010at 4207.462 kb on - strandat 4207.462 kb on - strandat 4207.462 kb on - strandat 4207.462 kb on - strandat 4207.489 kb on - strandat 4207.530 kb on - strandat 4207.551 kb on + strandat 4207.552 kb on - strandat 4207.636 kb on - strandat 4207.677 kb on + strand, within OHPLBJKB_04011at 4207.678 kb on - strand, within OHPLBJKB_04011at 4207.784 kb on + strandat 4207.784 kb on + strandat 4207.796 kb on - strandat 4207.796 kb on - strandat 4207.831 kb on + strandat 4207.831 kb on + strandat 4207.831 kb on + strandat 4207.832 kb on - strandat 4207.832 kb on - strandat 4207.836 kb on + strandat 4207.929 kb on + strandat 4207.929 kb on + strandat 4207.930 kb on - strandat 4207.930 kb on - strandat 4207.938 kb on - strandat 4207.963 kb on + strand, within OHPLBJKB_04012at 4207.963 kb on + strand, within OHPLBJKB_04012at 4207.964 kb on - strand, within OHPLBJKB_04012at 4207.964 kb on - strand, within OHPLBJKB_04012at 4207.966 kb on - strand, within OHPLBJKB_04012at 4208.005 kb on - strand, within OHPLBJKB_04012at 4208.013 kb on + strand, within OHPLBJKB_04012at 4208.014 kb on - strand, within OHPLBJKB_04012at 4208.014 kb on - strand, within OHPLBJKB_04012at 4208.091 kb on + strand, within OHPLBJKB_04012at 4208.092 kb on - strand, within OHPLBJKB_04012at 4208.264 kb on - strand, within OHPLBJKB_04012at 4208.265 kb on + strand, within OHPLBJKB_04012at 4208.344 kb on - strand, within OHPLBJKB_04012at 4208.377 kb on + strand, within OHPLBJKB_04012at 4208.377 kb on + strand, within OHPLBJKB_04012at 4208.378 kb on - strand, within OHPLBJKB_04012at 4208.440 kb on + strand, within OHPLBJKB_04012at 4208.441 kb on - strand, within OHPLBJKB_04012at 4208.441 kb on - strand, within OHPLBJKB_04012at 4208.441 kb on - strand, within OHPLBJKB_04012at 4208.441 kb on - strand, within OHPLBJKB_04012at 4208.441 kb on - strand, within OHPLBJKB_04012at 4208.449 kb on - strand, within OHPLBJKB_04012

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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4,205,424 + OHPLBJKB_04009 0.36 -0.3
4,205,505 + OHPLBJKB_04009 0.42 -0.6
4,205,554 - OHPLBJKB_04009 0.46 +0.7
4,205,606 + OHPLBJKB_04009 0.49 -0.2
4,205,606 + OHPLBJKB_04009 0.49 -0.3
4,205,607 - OHPLBJKB_04009 0.49 -1.6
4,205,610 + OHPLBJKB_04009 0.50 +0.4
4,205,611 - OHPLBJKB_04009 0.50 +0.0
4,205,650 + OHPLBJKB_04009 0.53 -0.5
4,205,651 - OHPLBJKB_04009 0.53 -2.6
4,205,722 - OHPLBJKB_04009 0.58 -0.1
4,205,722 - OHPLBJKB_04009 0.58 +0.1
4,205,723 + OHPLBJKB_04009 0.58 -0.9
4,205,723 + OHPLBJKB_04009 0.58 +0.4
4,205,723 + OHPLBJKB_04009 0.58 -0.8
4,205,723 + OHPLBJKB_04009 0.58 -1.1
4,205,723 + OHPLBJKB_04009 0.58 +0.5
4,205,729 + OHPLBJKB_04009 0.59 +0.3
4,205,729 + OHPLBJKB_04009 0.59 -0.2
4,205,729 + OHPLBJKB_04009 0.59 +0.2
4,205,729 + OHPLBJKB_04009 0.59 +0.1
4,205,729 + OHPLBJKB_04009 0.59 -0.8
4,205,729 + OHPLBJKB_04009 0.59 +2.0
4,205,730 - OHPLBJKB_04009 0.59 -0.6
4,205,730 - OHPLBJKB_04009 0.59 +0.1
4,205,730 - OHPLBJKB_04009 0.59 +0.1
4,205,730 - OHPLBJKB_04009 0.59 -0.2
4,205,730 - OHPLBJKB_04009 0.59 +0.3
4,205,730 - OHPLBJKB_04009 0.59 +0.0
4,205,733 + OHPLBJKB_04009 0.59 +0.2
4,205,733 + OHPLBJKB_04009 0.59 +0.0
4,205,733 + OHPLBJKB_04009 0.59 +0.1
4,205,734 - OHPLBJKB_04009 0.59 -0.1
4,205,734 - OHPLBJKB_04009 0.59 -0.4
4,205,734 - OHPLBJKB_04009 0.59 +0.4
4,205,871 + OHPLBJKB_04009 0.69 -0.4
4,205,871 + OHPLBJKB_04009 0.69 -0.6
4,205,871 + OHPLBJKB_04009 0.69 -1.9
4,205,871 + OHPLBJKB_04009 0.69 +1.7
4,205,871 + OHPLBJKB_04009 0.69 +0.1
4,205,891 + OHPLBJKB_04009 0.71 +0.8
4,205,891 + OHPLBJKB_04009 0.71 -3.3
4,205,892 - OHPLBJKB_04009 0.71 +0.0
4,205,892 - OHPLBJKB_04009 0.71 -0.7
4,205,892 - OHPLBJKB_04009 0.71 -0.6
4,205,892 - OHPLBJKB_04009 0.71 -0.9
4,205,901 + OHPLBJKB_04009 0.71 +0.1
4,205,901 + OHPLBJKB_04009 0.71 -1.1
4,205,982 + OHPLBJKB_04009 0.78 +0.4
4,206,024 + OHPLBJKB_04009 0.81 -0.4
4,206,035 + OHPLBJKB_04009 0.81 -0.1
4,206,035 + OHPLBJKB_04009 0.81 +0.6
4,206,089 + OHPLBJKB_04009 0.86 +0.1
4,206,090 - OHPLBJKB_04009 0.86 -0.0
4,206,090 - OHPLBJKB_04009 0.86 -0.4
4,206,117 - OHPLBJKB_04009 0.88 +0.7
4,206,120 + OHPLBJKB_04009 0.88 -1.0
4,206,120 + OHPLBJKB_04009 0.88 -0.5
4,206,121 - OHPLBJKB_04009 0.88 -0.6
4,206,233 - -0.4
4,206,276 + -0.2
4,206,276 + +0.2
4,206,276 + +0.3
4,206,277 - -1.5
4,206,288 + -1.2
4,206,288 + -0.2
4,206,288 + +0.1
4,206,289 - -0.6
4,206,462 + -0.2
4,206,487 + OHPLBJKB_04010 0.12 -0.3
4,206,604 - OHPLBJKB_04010 0.22 +0.6
4,206,604 - OHPLBJKB_04010 0.22 -0.5
4,206,632 + OHPLBJKB_04010 0.25 +0.4
4,206,632 + OHPLBJKB_04010 0.25 -0.7
4,206,633 - OHPLBJKB_04010 0.25 -1.3
4,206,633 - OHPLBJKB_04010 0.25 +0.4
4,206,633 - OHPLBJKB_04010 0.25 +0.9
4,206,741 + OHPLBJKB_04010 0.34 +0.6
4,206,809 - OHPLBJKB_04010 0.41 -0.8
4,206,809 - OHPLBJKB_04010 0.41 +0.6
4,206,907 + OHPLBJKB_04010 0.49 -0.1
4,206,908 - OHPLBJKB_04010 0.49 -0.9
4,207,011 + OHPLBJKB_04010 0.59 -0.6
4,207,011 + OHPLBJKB_04010 0.59 -0.5
4,207,012 - OHPLBJKB_04010 0.59 +0.7
4,207,187 + OHPLBJKB_04010 0.74 -1.8
4,207,187 + OHPLBJKB_04010 0.74 +0.5
4,207,198 - OHPLBJKB_04010 0.75 -0.1
4,207,214 - OHPLBJKB_04010 0.77 +0.2
4,207,462 - -0.6
4,207,462 - -1.5
4,207,462 - +1.2
4,207,462 - -0.4
4,207,489 - -0.3
4,207,530 - -0.5
4,207,551 + -0.7
4,207,552 - +0.0
4,207,636 - +1.4
4,207,677 + OHPLBJKB_04011 0.29 -0.3
4,207,678 - OHPLBJKB_04011 0.30 -1.3
4,207,784 + -0.1
4,207,784 + +0.9
4,207,796 - -1.4
4,207,796 - -0.4
4,207,831 + +0.2
4,207,831 + +0.4
4,207,831 + -0.4
4,207,832 - -0.2
4,207,832 - -0.7
4,207,836 + -0.6
4,207,929 + -0.1
4,207,929 + +0.3
4,207,930 - +0.3
4,207,930 - -1.1
4,207,938 - -0.2
4,207,963 + OHPLBJKB_04012 0.11 +0.1
4,207,963 + OHPLBJKB_04012 0.11 -0.8
4,207,964 - OHPLBJKB_04012 0.11 +0.1
4,207,964 - OHPLBJKB_04012 0.11 -0.1
4,207,966 - OHPLBJKB_04012 0.11 -0.2
4,208,005 - OHPLBJKB_04012 0.14 -0.8
4,208,013 + OHPLBJKB_04012 0.15 +0.7
4,208,014 - OHPLBJKB_04012 0.15 +0.3
4,208,014 - OHPLBJKB_04012 0.15 -0.3
4,208,091 + OHPLBJKB_04012 0.21 +0.1
4,208,092 - OHPLBJKB_04012 0.21 +0.4
4,208,264 - OHPLBJKB_04012 0.36 -0.3
4,208,265 + OHPLBJKB_04012 0.36 -0.0
4,208,344 - OHPLBJKB_04012 0.43 -0.1
4,208,377 + OHPLBJKB_04012 0.45 -0.9
4,208,377 + OHPLBJKB_04012 0.45 -2.0
4,208,378 - OHPLBJKB_04012 0.45 +0.6
4,208,440 + OHPLBJKB_04012 0.51 -0.1
4,208,441 - OHPLBJKB_04012 0.51 -1.2
4,208,441 - OHPLBJKB_04012 0.51 +0.6
4,208,441 - OHPLBJKB_04012 0.51 +0.4
4,208,441 - OHPLBJKB_04012 0.51 +0.2
4,208,441 - OHPLBJKB_04012 0.51 +0.0
4,208,449 - OHPLBJKB_04012 0.51 -1.4

Or see this region's nucleotide sequence