Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02463

Experiment: lib only

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_02462 and OHPLBJKB_02463 overlap by 8 nucleotidesOHPLBJKB_02463 and OHPLBJKB_02464 are separated by 0 nucleotides OHPLBJKB_02462: OHPLBJKB_02462 - Nitrate/nitrite sensor protein NarX, at 2,576,587 to 2,578,383 _02462 OHPLBJKB_02463: OHPLBJKB_02463 - Nitrate/nitrite response regulator protein NarL, at 2,578,376 to 2,579,026 _02463 OHPLBJKB_02464: OHPLBJKB_02464 - Invasin, at 2,579,027 to 2,580,457 _02464 Position (kb) 2578 2579 2580Strain fitness (log2 ratio) -2 -1 0 1 2at 2577.410 kb on + strand, within OHPLBJKB_02462at 2577.420 kb on - strand, within OHPLBJKB_02462at 2577.428 kb on + strand, within OHPLBJKB_02462at 2577.451 kb on + strand, within OHPLBJKB_02462at 2577.451 kb on + strand, within OHPLBJKB_02462at 2577.487 kb on - strand, within OHPLBJKB_02462at 2577.502 kb on - strand, within OHPLBJKB_02462at 2577.517 kb on - strand, within OHPLBJKB_02462at 2577.546 kb on - strand, within OHPLBJKB_02462at 2577.600 kb on + strand, within OHPLBJKB_02462at 2577.601 kb on - strand, within OHPLBJKB_02462at 2577.612 kb on + strand, within OHPLBJKB_02462at 2577.648 kb on + strand, within OHPLBJKB_02462at 2577.649 kb on - strand, within OHPLBJKB_02462at 2577.878 kb on + strand, within OHPLBJKB_02462at 2578.001 kb on - strand, within OHPLBJKB_02462at 2578.001 kb on - strand, within OHPLBJKB_02462at 2578.106 kb on + strand, within OHPLBJKB_02462at 2578.107 kb on - strand, within OHPLBJKB_02462at 2578.247 kb on + strandat 2578.247 kb on + strandat 2578.372 kb on - strandat 2578.400 kb on - strandat 2578.457 kb on - strand, within OHPLBJKB_02463at 2578.492 kb on + strand, within OHPLBJKB_02463at 2578.549 kb on - strand, within OHPLBJKB_02463at 2578.559 kb on - strand, within OHPLBJKB_02463at 2578.629 kb on + strand, within OHPLBJKB_02463at 2578.691 kb on + strand, within OHPLBJKB_02463at 2578.699 kb on - strand, within OHPLBJKB_02463at 2578.762 kb on - strand, within OHPLBJKB_02463at 2578.764 kb on + strand, within OHPLBJKB_02463at 2578.807 kb on + strand, within OHPLBJKB_02463at 2578.819 kb on + strand, within OHPLBJKB_02463at 2578.919 kb on - strand, within OHPLBJKB_02463at 2578.935 kb on + strand, within OHPLBJKB_02463at 2578.936 kb on - strand, within OHPLBJKB_02463at 2578.936 kb on - strand, within OHPLBJKB_02463at 2579.244 kb on - strand, within OHPLBJKB_02464at 2579.331 kb on - strand, within OHPLBJKB_02464at 2579.401 kb on + strand, within OHPLBJKB_02464at 2579.401 kb on + strand, within OHPLBJKB_02464at 2579.401 kb on + strand, within OHPLBJKB_02464at 2579.428 kb on + strand, within OHPLBJKB_02464at 2579.435 kb on + strand, within OHPLBJKB_02464at 2579.503 kb on + strand, within OHPLBJKB_02464at 2579.503 kb on + strand, within OHPLBJKB_02464at 2579.504 kb on - strand, within OHPLBJKB_02464at 2579.504 kb on - strand, within OHPLBJKB_02464at 2579.551 kb on + strand, within OHPLBJKB_02464at 2579.594 kb on + strand, within OHPLBJKB_02464at 2579.595 kb on - strand, within OHPLBJKB_02464at 2579.641 kb on + strand, within OHPLBJKB_02464at 2579.642 kb on - strand, within OHPLBJKB_02464at 2579.667 kb on + strand, within OHPLBJKB_02464at 2579.667 kb on + strand, within OHPLBJKB_02464at 2579.668 kb on - strand, within OHPLBJKB_02464at 2579.675 kb on + strand, within OHPLBJKB_02464at 2579.675 kb on + strand, within OHPLBJKB_02464at 2579.676 kb on - strand, within OHPLBJKB_02464at 2579.689 kb on + strand, within OHPLBJKB_02464at 2579.690 kb on - strand, within OHPLBJKB_02464at 2579.703 kb on + strand, within OHPLBJKB_02464at 2579.824 kb on - strand, within OHPLBJKB_02464at 2579.898 kb on + strand, within OHPLBJKB_02464at 2580.000 kb on + strand, within OHPLBJKB_02464at 2580.001 kb on - strand, within OHPLBJKB_02464at 2580.010 kb on + strand, within OHPLBJKB_02464at 2580.010 kb on + strand, within OHPLBJKB_02464

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction lib only
remove
2,577,410 + OHPLBJKB_02462 0.46 +0.1
2,577,420 - OHPLBJKB_02462 0.46 -0.5
2,577,428 + OHPLBJKB_02462 0.47 +0.3
2,577,451 + OHPLBJKB_02462 0.48 -1.1
2,577,451 + OHPLBJKB_02462 0.48 +0.4
2,577,487 - OHPLBJKB_02462 0.50 -0.4
2,577,502 - OHPLBJKB_02462 0.51 +0.0
2,577,517 - OHPLBJKB_02462 0.52 +2.1
2,577,546 - OHPLBJKB_02462 0.53 -0.7
2,577,600 + OHPLBJKB_02462 0.56 -0.6
2,577,601 - OHPLBJKB_02462 0.56 -0.4
2,577,612 + OHPLBJKB_02462 0.57 +0.5
2,577,648 + OHPLBJKB_02462 0.59 +0.5
2,577,649 - OHPLBJKB_02462 0.59 -2.2
2,577,878 + OHPLBJKB_02462 0.72 +0.2
2,578,001 - OHPLBJKB_02462 0.79 -2.1
2,578,001 - OHPLBJKB_02462 0.79 -0.4
2,578,106 + OHPLBJKB_02462 0.85 +1.7
2,578,107 - OHPLBJKB_02462 0.85 +1.2
2,578,247 + -0.4
2,578,247 + +0.1
2,578,372 - -0.2
2,578,400 - -0.0
2,578,457 - OHPLBJKB_02463 0.12 -0.9
2,578,492 + OHPLBJKB_02463 0.18 -0.2
2,578,549 - OHPLBJKB_02463 0.27 +0.5
2,578,559 - OHPLBJKB_02463 0.28 +0.7
2,578,629 + OHPLBJKB_02463 0.39 -0.3
2,578,691 + OHPLBJKB_02463 0.48 -0.5
2,578,699 - OHPLBJKB_02463 0.50 -0.6
2,578,762 - OHPLBJKB_02463 0.59 -0.2
2,578,764 + OHPLBJKB_02463 0.60 +0.0
2,578,807 + OHPLBJKB_02463 0.66 -0.9
2,578,819 + OHPLBJKB_02463 0.68 -0.4
2,578,919 - OHPLBJKB_02463 0.83 -1.6
2,578,935 + OHPLBJKB_02463 0.86 +0.6
2,578,936 - OHPLBJKB_02463 0.86 -0.2
2,578,936 - OHPLBJKB_02463 0.86 -0.5
2,579,244 - OHPLBJKB_02464 0.15 +0.6
2,579,331 - OHPLBJKB_02464 0.21 +1.2
2,579,401 + OHPLBJKB_02464 0.26 -0.2
2,579,401 + OHPLBJKB_02464 0.26 -1.1
2,579,401 + OHPLBJKB_02464 0.26 +1.3
2,579,428 + OHPLBJKB_02464 0.28 -1.2
2,579,435 + OHPLBJKB_02464 0.29 +0.0
2,579,503 + OHPLBJKB_02464 0.33 +0.8
2,579,503 + OHPLBJKB_02464 0.33 +1.1
2,579,504 - OHPLBJKB_02464 0.33 +0.5
2,579,504 - OHPLBJKB_02464 0.33 -0.3
2,579,551 + OHPLBJKB_02464 0.37 +0.1
2,579,594 + OHPLBJKB_02464 0.40 +0.3
2,579,595 - OHPLBJKB_02464 0.40 -0.7
2,579,641 + OHPLBJKB_02464 0.43 -0.1
2,579,642 - OHPLBJKB_02464 0.43 +0.0
2,579,667 + OHPLBJKB_02464 0.45 -2.1
2,579,667 + OHPLBJKB_02464 0.45 -1.2
2,579,668 - OHPLBJKB_02464 0.45 -0.0
2,579,675 + OHPLBJKB_02464 0.45 -0.1
2,579,675 + OHPLBJKB_02464 0.45 +0.2
2,579,676 - OHPLBJKB_02464 0.45 +0.2
2,579,689 + OHPLBJKB_02464 0.46 +0.3
2,579,690 - OHPLBJKB_02464 0.46 +0.5
2,579,703 + OHPLBJKB_02464 0.47 +2.4
2,579,824 - OHPLBJKB_02464 0.56 -0.9
2,579,898 + OHPLBJKB_02464 0.61 -0.8
2,580,000 + OHPLBJKB_02464 0.68 -0.4
2,580,001 - OHPLBJKB_02464 0.68 -0.8
2,580,010 + OHPLBJKB_02464 0.69 +0.4
2,580,010 + OHPLBJKB_02464 0.69 -2.4

Or see this region's nucleotide sequence