Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02296

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02294 and OHPLBJKB_02295 are separated by 398 nucleotidesOHPLBJKB_02295 and OHPLBJKB_02296 are separated by 71 nucleotidesOHPLBJKB_02296 and OHPLBJKB_02297 are separated by 244 nucleotidesOHPLBJKB_02297 and OHPLBJKB_02298 are separated by 188 nucleotides OHPLBJKB_02294: OHPLBJKB_02294 - Methyl-accepting chemotaxis protein III, at 2,388,105 to 2,389,745 _02294 OHPLBJKB_02295: OHPLBJKB_02295 - Toxic protein HokB, at 2,390,144 to 2,390,293 _02295 OHPLBJKB_02296: OHPLBJKB_02296 - hypothetical protein, at 2,390,365 to 2,390,538 _02296 OHPLBJKB_02297: OHPLBJKB_02297 - Cytochrome b561, at 2,390,783 to 2,391,313 _02297 OHPLBJKB_02298: OHPLBJKB_02298 - Glyceraldehyde-3-phosphate dehydrogenase, at 2,391,502 to 2,392,503 _02298 Position (kb) 2390 2391Strain fitness (log2 ratio) -2 -1 0 1at 2389.437 kb on - strand, within OHPLBJKB_02294at 2389.490 kb on + strand, within OHPLBJKB_02294at 2389.490 kb on + strand, within OHPLBJKB_02294at 2389.491 kb on - strand, within OHPLBJKB_02294at 2389.518 kb on - strand, within OHPLBJKB_02294at 2389.518 kb on - strand, within OHPLBJKB_02294at 2389.586 kb on + strandat 2389.644 kb on + strandat 2389.653 kb on + strandat 2389.659 kb on + strandat 2389.659 kb on + strandat 2389.660 kb on - strandat 2389.660 kb on - strandat 2389.739 kb on + strandat 2389.739 kb on + strandat 2389.739 kb on + strandat 2389.740 kb on - strandat 2389.740 kb on - strandat 2389.740 kb on - strandat 2389.803 kb on - strandat 2389.806 kb on + strandat 2389.807 kb on - strandat 2389.850 kb on + strandat 2389.986 kb on + strandat 2389.986 kb on + strandat 2389.987 kb on - strandat 2390.061 kb on + strandat 2390.062 kb on - strandat 2390.068 kb on - strandat 2390.093 kb on + strandat 2390.093 kb on + strandat 2390.094 kb on - strandat 2390.094 kb on - strandat 2390.094 kb on - strandat 2390.094 kb on - strandat 2390.108 kb on + strandat 2390.291 kb on + strandat 2390.292 kb on - strandat 2390.292 kb on - strandat 2390.397 kb on + strand, within OHPLBJKB_02296at 2390.398 kb on - strand, within OHPLBJKB_02296at 2390.398 kb on - strand, within OHPLBJKB_02296at 2390.433 kb on + strand, within OHPLBJKB_02296at 2390.433 kb on + strand, within OHPLBJKB_02296at 2390.520 kb on + strand, within OHPLBJKB_02296at 2390.520 kb on + strand, within OHPLBJKB_02296at 2390.521 kb on - strandat 2390.521 kb on - strandat 2390.538 kb on + strandat 2390.540 kb on + strandat 2390.540 kb on + strandat 2390.541 kb on - strandat 2390.541 kb on - strandat 2390.541 kb on - strandat 2390.541 kb on - strandat 2390.564 kb on + strandat 2390.564 kb on + strandat 2390.565 kb on - strandat 2390.583 kb on - strandat 2390.584 kb on + strandat 2390.584 kb on + strandat 2390.584 kb on + strandat 2390.584 kb on + strandat 2390.584 kb on + strandat 2390.584 kb on + strandat 2390.584 kb on + strandat 2390.585 kb on - strandat 2390.585 kb on - strandat 2390.585 kb on - strandat 2390.594 kb on + strandat 2390.672 kb on - strandat 2390.698 kb on + strandat 2390.698 kb on + strandat 2390.699 kb on - strandat 2390.699 kb on - strandat 2390.701 kb on - strandat 2390.701 kb on - strandat 2390.719 kb on - strandat 2390.758 kb on + strandat 2390.795 kb on - strandat 2390.810 kb on + strandat 2390.810 kb on + strandat 2390.811 kb on - strandat 2390.811 kb on - strandat 2390.880 kb on + strand, within OHPLBJKB_02297at 2390.916 kb on - strand, within OHPLBJKB_02297at 2390.920 kb on + strand, within OHPLBJKB_02297at 2390.920 kb on + strand, within OHPLBJKB_02297at 2390.920 kb on + strand, within OHPLBJKB_02297at 2390.920 kb on + strand, within OHPLBJKB_02297at 2390.920 kb on + strand, within OHPLBJKB_02297at 2390.921 kb on - strand, within OHPLBJKB_02297at 2390.921 kb on - strand, within OHPLBJKB_02297at 2390.953 kb on - strand, within OHPLBJKB_02297at 2390.997 kb on + strand, within OHPLBJKB_02297at 2390.997 kb on + strand, within OHPLBJKB_02297at 2390.997 kb on + strand, within OHPLBJKB_02297at 2390.997 kb on + strand, within OHPLBJKB_02297at 2390.998 kb on - strand, within OHPLBJKB_02297at 2390.998 kb on - strand, within OHPLBJKB_02297at 2390.998 kb on - strand, within OHPLBJKB_02297at 2390.998 kb on - strand, within OHPLBJKB_02297at 2391.032 kb on - strand, within OHPLBJKB_02297at 2391.043 kb on - strand, within OHPLBJKB_02297at 2391.094 kb on + strand, within OHPLBJKB_02297at 2391.094 kb on + strand, within OHPLBJKB_02297at 2391.094 kb on + strand, within OHPLBJKB_02297at 2391.094 kb on + strand, within OHPLBJKB_02297at 2391.098 kb on + strand, within OHPLBJKB_02297at 2391.099 kb on - strand, within OHPLBJKB_02297at 2391.099 kb on - strand, within OHPLBJKB_02297at 2391.099 kb on - strand, within OHPLBJKB_02297at 2391.100 kb on + strand, within OHPLBJKB_02297at 2391.118 kb on - strand, within OHPLBJKB_02297at 2391.209 kb on - strand, within OHPLBJKB_02297at 2391.244 kb on - strand, within OHPLBJKB_02297at 2391.333 kb on + strandat 2391.378 kb on + strandat 2391.378 kb on + strandat 2391.399 kb on - strandat 2391.450 kb on + strandat 2391.508 kb on - strandat 2391.516 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,389,437 - OHPLBJKB_02294 0.81 +0.1
2,389,490 + OHPLBJKB_02294 0.84 -0.4
2,389,490 + OHPLBJKB_02294 0.84 -0.8
2,389,491 - OHPLBJKB_02294 0.84 +0.4
2,389,518 - OHPLBJKB_02294 0.86 -0.1
2,389,518 - OHPLBJKB_02294 0.86 -0.5
2,389,586 + -1.5
2,389,644 + +0.4
2,389,653 + -0.1
2,389,659 + -1.9
2,389,659 + +0.1
2,389,660 - -0.8
2,389,660 - +1.5
2,389,739 + +0.9
2,389,739 + -0.5
2,389,739 + +0.4
2,389,740 - +0.8
2,389,740 - +0.2
2,389,740 - +0.8
2,389,803 - +0.5
2,389,806 + +1.7
2,389,807 - +0.3
2,389,850 + -0.7
2,389,986 + +0.9
2,389,986 + +0.5
2,389,987 - -0.3
2,390,061 + +1.0
2,390,062 - +0.1
2,390,068 - -0.1
2,390,093 + +0.2
2,390,093 + +1.2
2,390,094 - -1.6
2,390,094 - +0.4
2,390,094 - -2.0
2,390,094 - +0.1
2,390,108 + +0.6
2,390,291 + -0.6
2,390,292 - -0.4
2,390,292 - -0.1
2,390,397 + OHPLBJKB_02296 0.18 -1.0
2,390,398 - OHPLBJKB_02296 0.19 -0.9
2,390,398 - OHPLBJKB_02296 0.19 +0.1
2,390,433 + OHPLBJKB_02296 0.39 -0.2
2,390,433 + OHPLBJKB_02296 0.39 -0.2
2,390,520 + OHPLBJKB_02296 0.89 -0.6
2,390,520 + OHPLBJKB_02296 0.89 -1.8
2,390,521 - +0.1
2,390,521 - -0.0
2,390,538 + +0.1
2,390,540 + -1.2
2,390,540 + +0.1
2,390,541 - -0.0
2,390,541 - +0.3
2,390,541 - -0.7
2,390,541 - -0.0
2,390,564 + +0.5
2,390,564 + +0.4
2,390,565 - +0.2
2,390,583 - +0.6
2,390,584 + -1.0
2,390,584 + -0.4
2,390,584 + -1.0
2,390,584 + -0.3
2,390,584 + -0.3
2,390,584 + -0.1
2,390,584 + -0.6
2,390,585 - +0.2
2,390,585 - +0.8
2,390,585 - +0.2
2,390,594 + +0.7
2,390,672 - -0.5
2,390,698 + -0.2
2,390,698 + +0.6
2,390,699 - -0.1
2,390,699 - +0.9
2,390,701 - -0.6
2,390,701 - -0.1
2,390,719 - -0.0
2,390,758 + -0.9
2,390,795 - -0.7
2,390,810 + +0.8
2,390,810 + +0.0
2,390,811 - +0.8
2,390,811 - +0.9
2,390,880 + OHPLBJKB_02297 0.18 +1.3
2,390,916 - OHPLBJKB_02297 0.25 -0.6
2,390,920 + OHPLBJKB_02297 0.26 -1.7
2,390,920 + OHPLBJKB_02297 0.26 -0.8
2,390,920 + OHPLBJKB_02297 0.26 -0.1
2,390,920 + OHPLBJKB_02297 0.26 -1.2
2,390,920 + OHPLBJKB_02297 0.26 -0.2
2,390,921 - OHPLBJKB_02297 0.26 +0.8
2,390,921 - OHPLBJKB_02297 0.26 +1.0
2,390,953 - OHPLBJKB_02297 0.32 +0.1
2,390,997 + OHPLBJKB_02297 0.40 +1.0
2,390,997 + OHPLBJKB_02297 0.40 -1.9
2,390,997 + OHPLBJKB_02297 0.40 -0.4
2,390,997 + OHPLBJKB_02297 0.40 -0.8
2,390,998 - OHPLBJKB_02297 0.40 +0.4
2,390,998 - OHPLBJKB_02297 0.40 -0.7
2,390,998 - OHPLBJKB_02297 0.40 -0.4
2,390,998 - OHPLBJKB_02297 0.40 +0.4
2,391,032 - OHPLBJKB_02297 0.47 -0.4
2,391,043 - OHPLBJKB_02297 0.49 -0.6
2,391,094 + OHPLBJKB_02297 0.59 -2.2
2,391,094 + OHPLBJKB_02297 0.59 +0.3
2,391,094 + OHPLBJKB_02297 0.59 +0.4
2,391,094 + OHPLBJKB_02297 0.59 -0.2
2,391,098 + OHPLBJKB_02297 0.59 +1.5
2,391,099 - OHPLBJKB_02297 0.60 -1.1
2,391,099 - OHPLBJKB_02297 0.60 -0.0
2,391,099 - OHPLBJKB_02297 0.60 +0.7
2,391,100 + OHPLBJKB_02297 0.60 -0.0
2,391,118 - OHPLBJKB_02297 0.63 -0.6
2,391,209 - OHPLBJKB_02297 0.80 +0.1
2,391,244 - OHPLBJKB_02297 0.87 +0.4
2,391,333 + +0.2
2,391,378 + -0.9
2,391,378 + +0.5
2,391,399 - +0.0
2,391,450 + +0.8
2,391,508 - -2.4
2,391,516 + +0.6

Or see this region's nucleotide sequence