Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01369

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01368 and OHPLBJKB_01369 are separated by 19 nucleotidesOHPLBJKB_01369 and OHPLBJKB_01370 are separated by 15 nucleotidesOHPLBJKB_01370 and OHPLBJKB_01371 overlap by 4 nucleotides OHPLBJKB_01368: OHPLBJKB_01368 - Outer membrane usher protein PapC, at 1,414,007 to 1,416,649 _01368 OHPLBJKB_01369: OHPLBJKB_01369 - putative fimbrial chaperone YfcS, at 1,416,669 to 1,417,421 _01369 OHPLBJKB_01370: OHPLBJKB_01370 - putative fimbrial-like protein YfcR, at 1,417,437 to 1,417,946 _01370 OHPLBJKB_01371: OHPLBJKB_01371 - putative fimbrial-like protein YfcQ, at 1,417,943 to 1,418,431 _01371 Position (kb) 1416 1417 1418Strain fitness (log2 ratio) -1 0 1at 1415.669 kb on - strand, within OHPLBJKB_01368at 1415.669 kb on - strand, within OHPLBJKB_01368at 1415.674 kb on + strand, within OHPLBJKB_01368at 1415.675 kb on - strand, within OHPLBJKB_01368at 1415.711 kb on + strand, within OHPLBJKB_01368at 1415.711 kb on + strand, within OHPLBJKB_01368at 1415.738 kb on + strand, within OHPLBJKB_01368at 1415.738 kb on + strand, within OHPLBJKB_01368at 1415.739 kb on - strand, within OHPLBJKB_01368at 1415.739 kb on - strand, within OHPLBJKB_01368at 1415.739 kb on - strand, within OHPLBJKB_01368at 1415.739 kb on - strand, within OHPLBJKB_01368at 1415.739 kb on - strand, within OHPLBJKB_01368at 1415.739 kb on - strand, within OHPLBJKB_01368at 1415.773 kb on + strand, within OHPLBJKB_01368at 1415.774 kb on - strand, within OHPLBJKB_01368at 1415.774 kb on - strand, within OHPLBJKB_01368at 1415.783 kb on + strand, within OHPLBJKB_01368at 1415.783 kb on + strand, within OHPLBJKB_01368at 1415.783 kb on + strand, within OHPLBJKB_01368at 1415.783 kb on + strand, within OHPLBJKB_01368at 1415.783 kb on + strand, within OHPLBJKB_01368at 1415.783 kb on + strand, within OHPLBJKB_01368at 1415.783 kb on + strand, within OHPLBJKB_01368at 1415.784 kb on - strand, within OHPLBJKB_01368at 1415.784 kb on - strand, within OHPLBJKB_01368at 1415.784 kb on - strand, within OHPLBJKB_01368at 1415.795 kb on + strand, within OHPLBJKB_01368at 1415.795 kb on + strand, within OHPLBJKB_01368at 1415.795 kb on + strand, within OHPLBJKB_01368at 1415.796 kb on - strand, within OHPLBJKB_01368at 1415.796 kb on - strand, within OHPLBJKB_01368at 1415.796 kb on - strand, within OHPLBJKB_01368at 1415.796 kb on - strand, within OHPLBJKB_01368at 1415.796 kb on - strand, within OHPLBJKB_01368at 1415.909 kb on + strand, within OHPLBJKB_01368at 1415.910 kb on - strand, within OHPLBJKB_01368at 1415.910 kb on - strand, within OHPLBJKB_01368at 1415.954 kb on + strand, within OHPLBJKB_01368at 1415.954 kb on + strand, within OHPLBJKB_01368at 1415.969 kb on + strand, within OHPLBJKB_01368at 1415.969 kb on + strand, within OHPLBJKB_01368at 1415.969 kb on + strand, within OHPLBJKB_01368at 1415.970 kb on - strand, within OHPLBJKB_01368at 1416.011 kb on - strand, within OHPLBJKB_01368at 1416.122 kb on + strand, within OHPLBJKB_01368at 1416.122 kb on + strand, within OHPLBJKB_01368at 1416.130 kb on + strand, within OHPLBJKB_01368at 1416.131 kb on - strand, within OHPLBJKB_01368at 1416.163 kb on + strand, within OHPLBJKB_01368at 1416.167 kb on + strand, within OHPLBJKB_01368at 1416.167 kb on + strand, within OHPLBJKB_01368at 1416.167 kb on + strand, within OHPLBJKB_01368at 1416.168 kb on - strand, within OHPLBJKB_01368at 1416.168 kb on - strand, within OHPLBJKB_01368at 1416.168 kb on - strand, within OHPLBJKB_01368at 1416.168 kb on - strand, within OHPLBJKB_01368at 1416.168 kb on - strand, within OHPLBJKB_01368at 1416.186 kb on - strand, within OHPLBJKB_01368at 1416.186 kb on - strand, within OHPLBJKB_01368at 1416.186 kb on - strand, within OHPLBJKB_01368at 1416.186 kb on - strand, within OHPLBJKB_01368at 1416.186 kb on - strand, within OHPLBJKB_01368at 1416.186 kb on - strand, within OHPLBJKB_01368at 1416.411 kb on - strandat 1416.539 kb on - strandat 1416.549 kb on + strandat 1416.549 kb on + strandat 1416.549 kb on + strandat 1416.549 kb on + strandat 1416.550 kb on - strandat 1416.550 kb on - strandat 1416.550 kb on - strandat 1416.674 kb on + strandat 1416.674 kb on + strandat 1416.683 kb on + strandat 1416.862 kb on + strand, within OHPLBJKB_01369at 1417.143 kb on - strand, within OHPLBJKB_01369at 1417.184 kb on + strand, within OHPLBJKB_01369at 1417.197 kb on + strand, within OHPLBJKB_01369at 1417.197 kb on + strand, within OHPLBJKB_01369at 1417.200 kb on + strand, within OHPLBJKB_01369at 1417.200 kb on + strand, within OHPLBJKB_01369at 1417.201 kb on - strand, within OHPLBJKB_01369at 1417.201 kb on - strand, within OHPLBJKB_01369at 1417.436 kb on + strandat 1417.436 kb on + strandat 1417.437 kb on - strandat 1417.437 kb on - strandat 1417.469 kb on - strandat 1417.639 kb on - strand, within OHPLBJKB_01370at 1417.656 kb on + strand, within OHPLBJKB_01370at 1417.693 kb on + strand, within OHPLBJKB_01370at 1417.693 kb on + strand, within OHPLBJKB_01370at 1417.938 kb on + strandat 1417.939 kb on - strandat 1417.939 kb on - strandat 1417.966 kb on - strandat 1417.966 kb on - strandat 1418.048 kb on + strand, within OHPLBJKB_01371at 1418.048 kb on - strand, within OHPLBJKB_01371at 1418.117 kb on + strand, within OHPLBJKB_01371at 1418.117 kb on + strand, within OHPLBJKB_01371at 1418.117 kb on + strand, within OHPLBJKB_01371at 1418.118 kb on - strand, within OHPLBJKB_01371at 1418.118 kb on - strand, within OHPLBJKB_01371at 1418.118 kb on - strand, within OHPLBJKB_01371at 1418.138 kb on + strand, within OHPLBJKB_01371at 1418.138 kb on + strand, within OHPLBJKB_01371at 1418.182 kb on + strand, within OHPLBJKB_01371at 1418.182 kb on + strand, within OHPLBJKB_01371at 1418.216 kb on + strand, within OHPLBJKB_01371at 1418.217 kb on - strand, within OHPLBJKB_01371at 1418.231 kb on - strand, within OHPLBJKB_01371at 1418.231 kb on - strand, within OHPLBJKB_01371

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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1,415,669 - OHPLBJKB_01368 0.63 -0.5
1,415,669 - OHPLBJKB_01368 0.63 +0.3
1,415,674 + OHPLBJKB_01368 0.63 +0.6
1,415,675 - OHPLBJKB_01368 0.63 +0.5
1,415,711 + OHPLBJKB_01368 0.64 +0.3
1,415,711 + OHPLBJKB_01368 0.64 -1.2
1,415,738 + OHPLBJKB_01368 0.65 +0.2
1,415,738 + OHPLBJKB_01368 0.65 -0.4
1,415,739 - OHPLBJKB_01368 0.66 -0.6
1,415,739 - OHPLBJKB_01368 0.66 -0.2
1,415,739 - OHPLBJKB_01368 0.66 -0.1
1,415,739 - OHPLBJKB_01368 0.66 +0.8
1,415,739 - OHPLBJKB_01368 0.66 -0.6
1,415,739 - OHPLBJKB_01368 0.66 +0.6
1,415,773 + OHPLBJKB_01368 0.67 +0.5
1,415,774 - OHPLBJKB_01368 0.67 +0.0
1,415,774 - OHPLBJKB_01368 0.67 +0.2
1,415,783 + OHPLBJKB_01368 0.67 -1.2
1,415,783 + OHPLBJKB_01368 0.67 +1.2
1,415,783 + OHPLBJKB_01368 0.67 -0.2
1,415,783 + OHPLBJKB_01368 0.67 -1.2
1,415,783 + OHPLBJKB_01368 0.67 -0.4
1,415,783 + OHPLBJKB_01368 0.67 +0.5
1,415,783 + OHPLBJKB_01368 0.67 +0.1
1,415,784 - OHPLBJKB_01368 0.67 +0.3
1,415,784 - OHPLBJKB_01368 0.67 -0.1
1,415,784 - OHPLBJKB_01368 0.67 +0.4
1,415,795 + OHPLBJKB_01368 0.68 -0.6
1,415,795 + OHPLBJKB_01368 0.68 -0.9
1,415,795 + OHPLBJKB_01368 0.68 -0.1
1,415,796 - OHPLBJKB_01368 0.68 -0.2
1,415,796 - OHPLBJKB_01368 0.68 -0.2
1,415,796 - OHPLBJKB_01368 0.68 -1.4
1,415,796 - OHPLBJKB_01368 0.68 +0.4
1,415,796 - OHPLBJKB_01368 0.68 +0.1
1,415,909 + OHPLBJKB_01368 0.72 -0.5
1,415,910 - OHPLBJKB_01368 0.72 -0.4
1,415,910 - OHPLBJKB_01368 0.72 +0.9
1,415,954 + OHPLBJKB_01368 0.74 +0.1
1,415,954 + OHPLBJKB_01368 0.74 +0.3
1,415,969 + OHPLBJKB_01368 0.74 -0.2
1,415,969 + OHPLBJKB_01368 0.74 -0.3
1,415,969 + OHPLBJKB_01368 0.74 +0.5
1,415,970 - OHPLBJKB_01368 0.74 +0.3
1,416,011 - OHPLBJKB_01368 0.76 -0.2
1,416,122 + OHPLBJKB_01368 0.80 -0.4
1,416,122 + OHPLBJKB_01368 0.80 +0.8
1,416,130 + OHPLBJKB_01368 0.80 -0.3
1,416,131 - OHPLBJKB_01368 0.80 +0.1
1,416,163 + OHPLBJKB_01368 0.82 +0.3
1,416,167 + OHPLBJKB_01368 0.82 -0.7
1,416,167 + OHPLBJKB_01368 0.82 -0.2
1,416,167 + OHPLBJKB_01368 0.82 -0.0
1,416,168 - OHPLBJKB_01368 0.82 -0.5
1,416,168 - OHPLBJKB_01368 0.82 -0.0
1,416,168 - OHPLBJKB_01368 0.82 -0.3
1,416,168 - OHPLBJKB_01368 0.82 -1.0
1,416,168 - OHPLBJKB_01368 0.82 -0.7
1,416,186 - OHPLBJKB_01368 0.82 +0.8
1,416,186 - OHPLBJKB_01368 0.82 +0.2
1,416,186 - OHPLBJKB_01368 0.82 +0.0
1,416,186 - OHPLBJKB_01368 0.82 +0.0
1,416,186 - OHPLBJKB_01368 0.82 -0.1
1,416,186 - OHPLBJKB_01368 0.82 -0.7
1,416,411 - +0.2
1,416,539 - +0.0
1,416,549 + +0.3
1,416,549 + +0.8
1,416,549 + +0.1
1,416,549 + +0.5
1,416,550 - +0.6
1,416,550 - -0.5
1,416,550 - +0.1
1,416,674 + +0.4
1,416,674 + +0.9
1,416,683 + +0.6
1,416,862 + OHPLBJKB_01369 0.26 -0.2
1,417,143 - OHPLBJKB_01369 0.63 +0.2
1,417,184 + OHPLBJKB_01369 0.68 -0.9
1,417,197 + OHPLBJKB_01369 0.70 -0.2
1,417,197 + OHPLBJKB_01369 0.70 +0.2
1,417,200 + OHPLBJKB_01369 0.71 -0.2
1,417,200 + OHPLBJKB_01369 0.71 -0.2
1,417,201 - OHPLBJKB_01369 0.71 -0.5
1,417,201 - OHPLBJKB_01369 0.71 -0.5
1,417,436 + +0.5
1,417,436 + +0.6
1,417,437 - +0.4
1,417,437 - +0.6
1,417,469 - -0.3
1,417,639 - OHPLBJKB_01370 0.40 +0.2
1,417,656 + OHPLBJKB_01370 0.43 +0.1
1,417,693 + OHPLBJKB_01370 0.50 -0.1
1,417,693 + OHPLBJKB_01370 0.50 +0.7
1,417,938 + -0.7
1,417,939 - -0.4
1,417,939 - -0.4
1,417,966 - +1.7
1,417,966 - +0.6
1,418,048 + OHPLBJKB_01371 0.21 -0.5
1,418,048 - OHPLBJKB_01371 0.21 +0.4
1,418,117 + OHPLBJKB_01371 0.36 +0.0
1,418,117 + OHPLBJKB_01371 0.36 +0.0
1,418,117 + OHPLBJKB_01371 0.36 -0.1
1,418,118 - OHPLBJKB_01371 0.36 -0.2
1,418,118 - OHPLBJKB_01371 0.36 -0.3
1,418,118 - OHPLBJKB_01371 0.36 +0.2
1,418,138 + OHPLBJKB_01371 0.40 +1.0
1,418,138 + OHPLBJKB_01371 0.40 +1.0
1,418,182 + OHPLBJKB_01371 0.49 +0.7
1,418,182 + OHPLBJKB_01371 0.49 -1.0
1,418,216 + OHPLBJKB_01371 0.56 -0.7
1,418,217 - OHPLBJKB_01371 0.56 -0.3
1,418,231 - OHPLBJKB_01371 0.59 +0.3
1,418,231 - OHPLBJKB_01371 0.59 +0.1

Or see this region's nucleotide sequence