Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01232

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01230 and OHPLBJKB_01231 are separated by 137 nucleotidesOHPLBJKB_01231 and OHPLBJKB_01232 are separated by 20 nucleotidesOHPLBJKB_01232 and OHPLBJKB_01233 are separated by 212 nucleotides OHPLBJKB_01230: OHPLBJKB_01230 - DnaA regulatory inactivator Hda, at 1,269,868 to 1,270,614 _01230 OHPLBJKB_01231: OHPLBJKB_01231 - putative protein YfgD, at 1,270,752 to 1,271,111 _01231 OHPLBJKB_01232: OHPLBJKB_01232 - Beta-barrel assembly-enhancing protease, at 1,271,132 to 1,272,595 _01232 OHPLBJKB_01233: OHPLBJKB_01233 - Putative transport protein YhhT, at 1,272,808 to 1,273,869 _01233 Position (kb) 1271 1272 1273Strain fitness (log2 ratio) -2 -1 0 1 2at 1270.612 kb on + strandat 1270.612 kb on + strandat 1270.612 kb on + strandat 1270.613 kb on - strandat 1270.613 kb on - strandat 1270.616 kb on + strandat 1270.616 kb on + strandat 1270.617 kb on - strandat 1270.617 kb on - strandat 1270.661 kb on - strandat 1270.661 kb on - strandat 1270.671 kb on - strandat 1270.680 kb on + strandat 1270.754 kb on - strandat 1270.754 kb on - strandat 1270.770 kb on + strandat 1270.770 kb on + strandat 1270.833 kb on + strand, within OHPLBJKB_01231at 1270.907 kb on + strand, within OHPLBJKB_01231at 1270.907 kb on + strand, within OHPLBJKB_01231at 1270.908 kb on - strand, within OHPLBJKB_01231at 1270.909 kb on + strand, within OHPLBJKB_01231at 1270.909 kb on + strand, within OHPLBJKB_01231at 1270.909 kb on + strand, within OHPLBJKB_01231at 1270.910 kb on - strand, within OHPLBJKB_01231at 1271.008 kb on + strand, within OHPLBJKB_01231at 1271.008 kb on + strand, within OHPLBJKB_01231at 1271.009 kb on - strand, within OHPLBJKB_01231at 1271.009 kb on - strand, within OHPLBJKB_01231at 1271.013 kb on + strand, within OHPLBJKB_01231at 1271.014 kb on - strand, within OHPLBJKB_01231at 1271.089 kb on + strandat 1271.133 kb on + strandat 1271.134 kb on - strandat 1271.143 kb on + strandat 1271.143 kb on + strandat 1271.144 kb on - strandat 1271.144 kb on - strandat 1271.144 kb on - strandat 1271.146 kb on - strandat 1271.153 kb on - strandat 1271.220 kb on - strandat 1271.328 kb on - strand, within OHPLBJKB_01232at 1271.377 kb on + strand, within OHPLBJKB_01232at 1271.381 kb on - strand, within OHPLBJKB_01232at 1271.391 kb on + strand, within OHPLBJKB_01232at 1271.562 kb on + strand, within OHPLBJKB_01232at 1271.562 kb on + strand, within OHPLBJKB_01232at 1271.622 kb on + strand, within OHPLBJKB_01232at 1271.626 kb on + strand, within OHPLBJKB_01232at 1271.658 kb on + strand, within OHPLBJKB_01232at 1271.658 kb on + strand, within OHPLBJKB_01232at 1271.658 kb on + strand, within OHPLBJKB_01232at 1271.659 kb on - strand, within OHPLBJKB_01232at 1271.659 kb on - strand, within OHPLBJKB_01232at 1271.728 kb on + strand, within OHPLBJKB_01232at 1271.729 kb on - strand, within OHPLBJKB_01232at 1271.740 kb on + strand, within OHPLBJKB_01232at 1271.740 kb on + strand, within OHPLBJKB_01232at 1271.740 kb on + strand, within OHPLBJKB_01232at 1271.741 kb on - strand, within OHPLBJKB_01232at 1271.741 kb on - strand, within OHPLBJKB_01232at 1271.742 kb on + strand, within OHPLBJKB_01232at 1271.742 kb on + strand, within OHPLBJKB_01232at 1271.742 kb on + strand, within OHPLBJKB_01232at 1271.742 kb on + strand, within OHPLBJKB_01232at 1271.742 kb on + strand, within OHPLBJKB_01232at 1271.742 kb on + strand, within OHPLBJKB_01232at 1271.743 kb on - strand, within OHPLBJKB_01232at 1271.743 kb on - strand, within OHPLBJKB_01232at 1271.743 kb on - strand, within OHPLBJKB_01232at 1271.743 kb on - strand, within OHPLBJKB_01232at 1271.743 kb on - strand, within OHPLBJKB_01232at 1271.972 kb on - strand, within OHPLBJKB_01232at 1272.095 kb on - strand, within OHPLBJKB_01232at 1272.102 kb on - strand, within OHPLBJKB_01232at 1272.367 kb on + strand, within OHPLBJKB_01232at 1272.368 kb on - strand, within OHPLBJKB_01232at 1272.370 kb on + strand, within OHPLBJKB_01232at 1272.370 kb on + strand, within OHPLBJKB_01232at 1272.371 kb on - strand, within OHPLBJKB_01232at 1272.371 kb on - strand, within OHPLBJKB_01232at 1272.371 kb on - strand, within OHPLBJKB_01232at 1272.372 kb on + strand, within OHPLBJKB_01232at 1272.373 kb on - strand, within OHPLBJKB_01232at 1272.394 kb on + strand, within OHPLBJKB_01232at 1272.395 kb on - strand, within OHPLBJKB_01232at 1272.429 kb on + strand, within OHPLBJKB_01232at 1272.429 kb on + strand, within OHPLBJKB_01232at 1272.429 kb on + strand, within OHPLBJKB_01232at 1272.429 kb on + strand, within OHPLBJKB_01232at 1272.429 kb on + strand, within OHPLBJKB_01232at 1272.430 kb on - strand, within OHPLBJKB_01232at 1272.430 kb on - strand, within OHPLBJKB_01232at 1272.430 kb on - strand, within OHPLBJKB_01232at 1272.430 kb on - strand, within OHPLBJKB_01232at 1272.430 kb on - strand, within OHPLBJKB_01232at 1272.433 kb on - strand, within OHPLBJKB_01232at 1272.433 kb on - strand, within OHPLBJKB_01232at 1272.433 kb on - strand, within OHPLBJKB_01232at 1272.530 kb on + strandat 1272.548 kb on - strandat 1272.595 kb on + strandat 1272.596 kb on - strandat 1272.807 kb on + strandat 1272.807 kb on + strandat 1272.807 kb on + strandat 1272.847 kb on - strandat 1272.881 kb on + strandat 1272.882 kb on - strandat 1272.900 kb on + strandat 1272.901 kb on - strandat 1272.913 kb on - strandat 1272.913 kb on - strandat 1272.955 kb on + strand, within OHPLBJKB_01233at 1272.955 kb on + strand, within OHPLBJKB_01233at 1272.956 kb on - strand, within OHPLBJKB_01233at 1272.990 kb on + strand, within OHPLBJKB_01233at 1272.991 kb on - strand, within OHPLBJKB_01233at 1272.991 kb on - strand, within OHPLBJKB_01233at 1273.025 kb on + strand, within OHPLBJKB_01233at 1273.025 kb on + strand, within OHPLBJKB_01233at 1273.026 kb on - strand, within OHPLBJKB_01233at 1273.044 kb on + strand, within OHPLBJKB_01233at 1273.045 kb on - strand, within OHPLBJKB_01233at 1273.046 kb on + strand, within OHPLBJKB_01233at 1273.046 kb on + strand, within OHPLBJKB_01233at 1273.046 kb on + strand, within OHPLBJKB_01233at 1273.046 kb on + strand, within OHPLBJKB_01233at 1273.047 kb on - strand, within OHPLBJKB_01233at 1273.053 kb on - strand, within OHPLBJKB_01233at 1273.071 kb on - strand, within OHPLBJKB_01233at 1273.103 kb on + strand, within OHPLBJKB_01233at 1273.132 kb on - strand, within OHPLBJKB_01233at 1273.292 kb on + strand, within OHPLBJKB_01233at 1273.301 kb on - strand, within OHPLBJKB_01233at 1273.441 kb on + strand, within OHPLBJKB_01233at 1273.441 kb on + strand, within OHPLBJKB_01233at 1273.441 kb on + strand, within OHPLBJKB_01233at 1273.441 kb on + strand, within OHPLBJKB_01233at 1273.441 kb on + strand, within OHPLBJKB_01233at 1273.441 kb on + strand, within OHPLBJKB_01233at 1273.441 kb on + strand, within OHPLBJKB_01233at 1273.441 kb on + strand, within OHPLBJKB_01233at 1273.442 kb on - strand, within OHPLBJKB_01233at 1273.442 kb on - strand, within OHPLBJKB_01233at 1273.442 kb on - strand, within OHPLBJKB_01233at 1273.442 kb on - strand, within OHPLBJKB_01233at 1273.442 kb on - strand, within OHPLBJKB_01233at 1273.442 kb on - strand, within OHPLBJKB_01233at 1273.442 kb on - strand, within OHPLBJKB_01233at 1273.442 kb on - strand, within OHPLBJKB_01233at 1273.442 kb on - strand, within OHPLBJKB_01233at 1273.442 kb on - strand, within OHPLBJKB_01233at 1273.443 kb on + strand, within OHPLBJKB_01233at 1273.519 kb on + strand, within OHPLBJKB_01233at 1273.520 kb on - strand, within OHPLBJKB_01233at 1273.520 kb on - strand, within OHPLBJKB_01233at 1273.520 kb on - strand, within OHPLBJKB_01233at 1273.556 kb on + strand, within OHPLBJKB_01233at 1273.557 kb on - strand, within OHPLBJKB_01233at 1273.560 kb on + strand, within OHPLBJKB_01233at 1273.560 kb on + strand, within OHPLBJKB_01233at 1273.561 kb on - strand, within OHPLBJKB_01233at 1273.568 kb on - strand, within OHPLBJKB_01233

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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1,270,612 + -0.6
1,270,612 + -0.8
1,270,612 + -1.5
1,270,613 - +0.2
1,270,613 - +1.0
1,270,616 + +0.3
1,270,616 + -0.2
1,270,617 - -1.7
1,270,617 - +0.8
1,270,661 - -0.5
1,270,661 - +0.3
1,270,671 - -0.8
1,270,680 + -0.6
1,270,754 - -0.3
1,270,754 - +0.2
1,270,770 + +0.1
1,270,770 + -0.0
1,270,833 + OHPLBJKB_01231 0.23 -2.2
1,270,907 + OHPLBJKB_01231 0.43 -1.0
1,270,907 + OHPLBJKB_01231 0.43 -1.4
1,270,908 - OHPLBJKB_01231 0.43 +0.2
1,270,909 + OHPLBJKB_01231 0.44 +0.8
1,270,909 + OHPLBJKB_01231 0.44 -0.0
1,270,909 + OHPLBJKB_01231 0.44 -0.1
1,270,910 - OHPLBJKB_01231 0.44 -0.1
1,271,008 + OHPLBJKB_01231 0.71 -0.2
1,271,008 + OHPLBJKB_01231 0.71 +0.3
1,271,009 - OHPLBJKB_01231 0.71 +0.2
1,271,009 - OHPLBJKB_01231 0.71 +1.2
1,271,013 + OHPLBJKB_01231 0.72 -0.0
1,271,014 - OHPLBJKB_01231 0.73 -0.9
1,271,089 + -0.1
1,271,133 + +0.8
1,271,134 - +0.6
1,271,143 + -0.5
1,271,143 + -0.1
1,271,144 - +0.6
1,271,144 - -0.0
1,271,144 - +0.3
1,271,146 - +0.0
1,271,153 - +0.1
1,271,220 - -0.4
1,271,328 - OHPLBJKB_01232 0.13 -0.3
1,271,377 + OHPLBJKB_01232 0.17 +0.5
1,271,381 - OHPLBJKB_01232 0.17 +0.0
1,271,391 + OHPLBJKB_01232 0.18 +0.8
1,271,562 + OHPLBJKB_01232 0.29 +0.9
1,271,562 + OHPLBJKB_01232 0.29 +0.1
1,271,622 + OHPLBJKB_01232 0.33 -1.2
1,271,626 + OHPLBJKB_01232 0.34 +0.9
1,271,658 + OHPLBJKB_01232 0.36 +2.1
1,271,658 + OHPLBJKB_01232 0.36 +0.2
1,271,658 + OHPLBJKB_01232 0.36 +0.1
1,271,659 - OHPLBJKB_01232 0.36 -0.7
1,271,659 - OHPLBJKB_01232 0.36 +0.5
1,271,728 + OHPLBJKB_01232 0.41 -0.7
1,271,729 - OHPLBJKB_01232 0.41 +0.9
1,271,740 + OHPLBJKB_01232 0.42 -0.8
1,271,740 + OHPLBJKB_01232 0.42 -0.1
1,271,740 + OHPLBJKB_01232 0.42 -0.3
1,271,741 - OHPLBJKB_01232 0.42 -0.2
1,271,741 - OHPLBJKB_01232 0.42 -0.4
1,271,742 + OHPLBJKB_01232 0.42 -0.5
1,271,742 + OHPLBJKB_01232 0.42 -0.3
1,271,742 + OHPLBJKB_01232 0.42 +0.5
1,271,742 + OHPLBJKB_01232 0.42 -0.2
1,271,742 + OHPLBJKB_01232 0.42 -0.2
1,271,742 + OHPLBJKB_01232 0.42 +0.5
1,271,743 - OHPLBJKB_01232 0.42 -0.6
1,271,743 - OHPLBJKB_01232 0.42 -1.1
1,271,743 - OHPLBJKB_01232 0.42 +1.4
1,271,743 - OHPLBJKB_01232 0.42 +0.4
1,271,743 - OHPLBJKB_01232 0.42 -0.5
1,271,972 - OHPLBJKB_01232 0.57 -0.0
1,272,095 - OHPLBJKB_01232 0.66 +0.6
1,272,102 - OHPLBJKB_01232 0.66 -1.5
1,272,367 + OHPLBJKB_01232 0.84 +0.6
1,272,368 - OHPLBJKB_01232 0.84 -0.0
1,272,370 + OHPLBJKB_01232 0.85 -2.0
1,272,370 + OHPLBJKB_01232 0.85 +0.5
1,272,371 - OHPLBJKB_01232 0.85 -0.9
1,272,371 - OHPLBJKB_01232 0.85 +0.8
1,272,371 - OHPLBJKB_01232 0.85 -0.2
1,272,372 + OHPLBJKB_01232 0.85 +0.1
1,272,373 - OHPLBJKB_01232 0.85 -0.3
1,272,394 + OHPLBJKB_01232 0.86 +1.3
1,272,395 - OHPLBJKB_01232 0.86 -0.8
1,272,429 + OHPLBJKB_01232 0.89 +0.6
1,272,429 + OHPLBJKB_01232 0.89 +0.2
1,272,429 + OHPLBJKB_01232 0.89 -1.0
1,272,429 + OHPLBJKB_01232 0.89 +0.4
1,272,429 + OHPLBJKB_01232 0.89 +0.9
1,272,430 - OHPLBJKB_01232 0.89 -0.5
1,272,430 - OHPLBJKB_01232 0.89 -0.6
1,272,430 - OHPLBJKB_01232 0.89 +0.4
1,272,430 - OHPLBJKB_01232 0.89 -0.9
1,272,430 - OHPLBJKB_01232 0.89 +0.4
1,272,433 - OHPLBJKB_01232 0.89 +0.5
1,272,433 - OHPLBJKB_01232 0.89 +1.1
1,272,433 - OHPLBJKB_01232 0.89 -1.9
1,272,530 + -1.1
1,272,548 - +1.1
1,272,595 + +0.5
1,272,596 - -0.2
1,272,807 + -1.4
1,272,807 + +0.4
1,272,807 + +0.3
1,272,847 - -0.2
1,272,881 + +0.6
1,272,882 - +0.6
1,272,900 + -0.1
1,272,901 - -0.2
1,272,913 - +0.4
1,272,913 - +0.3
1,272,955 + OHPLBJKB_01233 0.14 +0.7
1,272,955 + OHPLBJKB_01233 0.14 -0.6
1,272,956 - OHPLBJKB_01233 0.14 -0.6
1,272,990 + OHPLBJKB_01233 0.17 +0.2
1,272,991 - OHPLBJKB_01233 0.17 -0.6
1,272,991 - OHPLBJKB_01233 0.17 -1.1
1,273,025 + OHPLBJKB_01233 0.20 -1.7
1,273,025 + OHPLBJKB_01233 0.20 +0.1
1,273,026 - OHPLBJKB_01233 0.21 -0.3
1,273,044 + OHPLBJKB_01233 0.22 +0.9
1,273,045 - OHPLBJKB_01233 0.22 +0.1
1,273,046 + OHPLBJKB_01233 0.22 -0.6
1,273,046 + OHPLBJKB_01233 0.22 +0.2
1,273,046 + OHPLBJKB_01233 0.22 +0.7
1,273,046 + OHPLBJKB_01233 0.22 -1.1
1,273,047 - OHPLBJKB_01233 0.23 +0.1
1,273,053 - OHPLBJKB_01233 0.23 -0.9
1,273,071 - OHPLBJKB_01233 0.25 +0.9
1,273,103 + OHPLBJKB_01233 0.28 +0.6
1,273,132 - OHPLBJKB_01233 0.31 -0.2
1,273,292 + OHPLBJKB_01233 0.46 -0.6
1,273,301 - OHPLBJKB_01233 0.46 -1.3
1,273,441 + OHPLBJKB_01233 0.60 -0.6
1,273,441 + OHPLBJKB_01233 0.60 -0.3
1,273,441 + OHPLBJKB_01233 0.60 -0.8
1,273,441 + OHPLBJKB_01233 0.60 +0.8
1,273,441 + OHPLBJKB_01233 0.60 +0.7
1,273,441 + OHPLBJKB_01233 0.60 -0.6
1,273,441 + OHPLBJKB_01233 0.60 +0.3
1,273,441 + OHPLBJKB_01233 0.60 +0.1
1,273,442 - OHPLBJKB_01233 0.60 -0.4
1,273,442 - OHPLBJKB_01233 0.60 +0.2
1,273,442 - OHPLBJKB_01233 0.60 +0.8
1,273,442 - OHPLBJKB_01233 0.60 +0.3
1,273,442 - OHPLBJKB_01233 0.60 +0.4
1,273,442 - OHPLBJKB_01233 0.60 -1.0
1,273,442 - OHPLBJKB_01233 0.60 -0.5
1,273,442 - OHPLBJKB_01233 0.60 -1.8
1,273,442 - OHPLBJKB_01233 0.60 +0.3
1,273,442 - OHPLBJKB_01233 0.60 +0.5
1,273,443 + OHPLBJKB_01233 0.60 +0.9
1,273,519 + OHPLBJKB_01233 0.67 +0.6
1,273,520 - OHPLBJKB_01233 0.67 -0.4
1,273,520 - OHPLBJKB_01233 0.67 -0.1
1,273,520 - OHPLBJKB_01233 0.67 -0.4
1,273,556 + OHPLBJKB_01233 0.70 +0.3
1,273,557 - OHPLBJKB_01233 0.71 +1.4
1,273,560 + OHPLBJKB_01233 0.71 +0.4
1,273,560 + OHPLBJKB_01233 0.71 +0.2
1,273,561 - OHPLBJKB_01233 0.71 -0.5
1,273,568 - OHPLBJKB_01233 0.72 +0.2

Or see this region's nucleotide sequence