Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01207

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01206 and OHPLBJKB_01207 are separated by 206 nucleotidesOHPLBJKB_01207 and OHPLBJKB_01208 are separated by 6 nucleotidesOHPLBJKB_01208 and OHPLBJKB_01209 are separated by 10 nucleotides OHPLBJKB_01206: OHPLBJKB_01206 - hypothetical protein, at 1,244,466 to 1,245,806 _01206 OHPLBJKB_01207: OHPLBJKB_01207 - hypothetical protein, at 1,246,013 to 1,246,243 _01207 OHPLBJKB_01208: OHPLBJKB_01208 - hypothetical protein, at 1,246,250 to 1,247,161 _01208 OHPLBJKB_01209: OHPLBJKB_01209 - IS1 family transposase IS1S, at 1,247,172 to 1,247,438 _01209 Position (kb) 1246 1247Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1245.090 kb on + strand, within OHPLBJKB_01206at 1245.096 kb on - strand, within OHPLBJKB_01206at 1245.101 kb on + strand, within OHPLBJKB_01206at 1245.102 kb on - strand, within OHPLBJKB_01206at 1245.112 kb on + strand, within OHPLBJKB_01206at 1245.238 kb on - strand, within OHPLBJKB_01206at 1245.240 kb on + strand, within OHPLBJKB_01206at 1245.240 kb on + strand, within OHPLBJKB_01206at 1245.285 kb on - strand, within OHPLBJKB_01206at 1245.492 kb on - strand, within OHPLBJKB_01206at 1245.497 kb on + strand, within OHPLBJKB_01206at 1245.672 kb on + strand, within OHPLBJKB_01206at 1245.672 kb on + strand, within OHPLBJKB_01206at 1245.752 kb on + strandat 1245.753 kb on - strandat 1245.753 kb on - strandat 1245.757 kb on + strandat 1245.758 kb on - strandat 1245.758 kb on - strandat 1245.766 kb on - strandat 1245.766 kb on - strandat 1245.777 kb on + strandat 1245.777 kb on + strandat 1245.778 kb on - strandat 1245.778 kb on - strandat 1245.800 kb on - strandat 1245.823 kb on - strandat 1245.825 kb on - strandat 1245.842 kb on + strandat 1245.856 kb on + strandat 1245.856 kb on + strandat 1245.882 kb on - strandat 1245.934 kb on + strandat 1246.030 kb on + strandat 1246.030 kb on + strandat 1246.031 kb on - strandat 1246.031 kb on - strandat 1246.031 kb on - strandat 1246.031 kb on - strandat 1246.031 kb on - strandat 1246.039 kb on - strand, within OHPLBJKB_01207at 1246.043 kb on - strand, within OHPLBJKB_01207at 1246.049 kb on - strand, within OHPLBJKB_01207at 1246.091 kb on + strand, within OHPLBJKB_01207at 1246.091 kb on + strand, within OHPLBJKB_01207at 1246.092 kb on - strand, within OHPLBJKB_01207at 1246.094 kb on - strand, within OHPLBJKB_01207at 1246.126 kb on + strand, within OHPLBJKB_01207at 1246.127 kb on - strand, within OHPLBJKB_01207at 1246.229 kb on - strandat 1246.269 kb on + strandat 1246.372 kb on + strand, within OHPLBJKB_01208at 1246.373 kb on - strand, within OHPLBJKB_01208at 1246.499 kb on - strand, within OHPLBJKB_01208at 1246.762 kb on + strand, within OHPLBJKB_01208at 1246.921 kb on - strand, within OHPLBJKB_01208at 1246.995 kb on + strand, within OHPLBJKB_01208at 1246.995 kb on + strand, within OHPLBJKB_01208at 1246.996 kb on - strand, within OHPLBJKB_01208at 1246.997 kb on + strand, within OHPLBJKB_01208at 1246.998 kb on - strand, within OHPLBJKB_01208at 1247.081 kb on - strandat 1247.081 kb on - strandat 1247.081 kb on - strandat 1247.136 kb on + strandat 1247.136 kb on + strandat 1247.188 kb on - strandat 1247.188 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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1,245,090 + OHPLBJKB_01206 0.47 -1.4
1,245,096 - OHPLBJKB_01206 0.47 +0.0
1,245,101 + OHPLBJKB_01206 0.47 -1.1
1,245,102 - OHPLBJKB_01206 0.47 -0.1
1,245,112 + OHPLBJKB_01206 0.48 -0.4
1,245,238 - OHPLBJKB_01206 0.58 -0.1
1,245,240 + OHPLBJKB_01206 0.58 -0.5
1,245,240 + OHPLBJKB_01206 0.58 -0.1
1,245,285 - OHPLBJKB_01206 0.61 -0.1
1,245,492 - OHPLBJKB_01206 0.77 -0.7
1,245,497 + OHPLBJKB_01206 0.77 -0.8
1,245,672 + OHPLBJKB_01206 0.90 +0.3
1,245,672 + OHPLBJKB_01206 0.90 +0.4
1,245,752 + +0.5
1,245,753 - +0.0
1,245,753 - +0.3
1,245,757 + +0.3
1,245,758 - -0.0
1,245,758 - -0.6
1,245,766 - +1.8
1,245,766 - -0.7
1,245,777 + +0.1
1,245,777 + +0.8
1,245,778 - -0.7
1,245,778 - -0.5
1,245,800 - -3.0
1,245,823 - +0.0
1,245,825 - -1.1
1,245,842 + -0.1
1,245,856 + -0.4
1,245,856 + +0.3
1,245,882 - +1.2
1,245,934 + +0.6
1,246,030 + -0.2
1,246,030 + -0.3
1,246,031 - +0.1
1,246,031 - -0.7
1,246,031 - +2.9
1,246,031 - -0.9
1,246,031 - -0.2
1,246,039 - OHPLBJKB_01207 0.11 -0.6
1,246,043 - OHPLBJKB_01207 0.13 +0.1
1,246,049 - OHPLBJKB_01207 0.16 +1.6
1,246,091 + OHPLBJKB_01207 0.34 -0.6
1,246,091 + OHPLBJKB_01207 0.34 +1.0
1,246,092 - OHPLBJKB_01207 0.34 +0.6
1,246,094 - OHPLBJKB_01207 0.35 +0.8
1,246,126 + OHPLBJKB_01207 0.49 +0.5
1,246,127 - OHPLBJKB_01207 0.49 -0.7
1,246,229 - -0.9
1,246,269 + -1.1
1,246,372 + OHPLBJKB_01208 0.13 +0.2
1,246,373 - OHPLBJKB_01208 0.13 -0.3
1,246,499 - OHPLBJKB_01208 0.27 +0.1
1,246,762 + OHPLBJKB_01208 0.56 +1.3
1,246,921 - OHPLBJKB_01208 0.74 -1.1
1,246,995 + OHPLBJKB_01208 0.82 -2.1
1,246,995 + OHPLBJKB_01208 0.82 +0.2
1,246,996 - OHPLBJKB_01208 0.82 +0.0
1,246,997 + OHPLBJKB_01208 0.82 -0.6
1,246,998 - OHPLBJKB_01208 0.82 -3.0
1,247,081 - +0.3
1,247,081 - -1.3
1,247,081 - -1.6
1,247,136 + +0.8
1,247,136 + -0.2
1,247,188 - +0.4
1,247,188 - -0.3

Or see this region's nucleotide sequence