Experiment: lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00408 and OHPLBJKB_00409 are separated by 40 nucleotides OHPLBJKB_00409 and OHPLBJKB_00410 are separated by 106 nucleotides OHPLBJKB_00410 and OHPLBJKB_00411 are separated by 10 nucleotides OHPLBJKB_00411 and OHPLBJKB_00412 are separated by 55 nucleotides OHPLBJKB_00412 and OHPLBJKB_00413 overlap by 4 nucleotides OHPLBJKB_00413 and OHPLBJKB_00414 are separated by 129 nucleotides
OHPLBJKB_00408: OHPLBJKB_00408 - DNA-directed RNA polymerase subunit alpha, at 425,529 to 426,518
_00408
OHPLBJKB_00409: OHPLBJKB_00409 - 50S ribosomal protein L17, at 426,559 to 426,942
_00409
OHPLBJKB_00410: OHPLBJKB_00410 - hypothetical protein, at 427,049 to 427,417
_00410
OHPLBJKB_00411: OHPLBJKB_00411 - HTH-type transcriptional regulator ZntR, at 427,428 to 427,853
_00411
OHPLBJKB_00412: OHPLBJKB_00412 - Alternative ribosome-rescue factor A, at 427,909 to 428,127
_00412
OHPLBJKB_00413: OHPLBJKB_00413 - Large-conductance mechanosensitive channel, at 428,124 to 428,534
_00413
OHPLBJKB_00414: OHPLBJKB_00414 - Trk system potassium uptake protein TrkA, at 428,664 to 430,040
_00414
Position (kb) 427
428 Strain fitness (log2 ratio) -2
-1
0
1 at 426.991 kb on + strand at 426.991 kb on + strand at 426.991 kb on + strand at 426.992 kb on - strand at 426.992 kb on - strand at 427.004 kb on + strand at 427.004 kb on + strand at 427.004 kb on + strand at 427.004 kb on + strand at 427.004 kb on + strand at 427.005 kb on - strand at 427.005 kb on - strand at 427.005 kb on - strand at 427.005 kb on - strand at 427.009 kb on - strand at 427.014 kb on - strand at 427.014 kb on - strand at 427.014 kb on - strand at 427.014 kb on - strand at 427.019 kb on + strand at 427.019 kb on + strand at 427.019 kb on + strand at 427.044 kb on + strand at 427.044 kb on + strand at 427.044 kb on + strand at 427.045 kb on - strand at 427.045 kb on - strand at 427.045 kb on - strand at 427.048 kb on + strand at 427.048 kb on + strand at 427.049 kb on - strand at 427.049 kb on - strand at 427.049 kb on - strand at 427.056 kb on + strand at 427.057 kb on - strand at 427.081 kb on + strand at 427.083 kb on + strand at 427.083 kb on + strand at 427.084 kb on - strand at 427.084 kb on - strand at 427.084 kb on - strand at 427.084 kb on - strand at 427.084 kb on - strand at 427.261 kb on + strand, within OHPLBJKB_00410 at 427.415 kb on + strand at 427.416 kb on - strand at 427.416 kb on - strand at 427.423 kb on + strand at 427.423 kb on + strand at 427.423 kb on + strand at 427.423 kb on + strand at 427.423 kb on + strand at 427.424 kb on - strand at 427.424 kb on - strand at 427.424 kb on - strand at 427.424 kb on - strand at 427.424 kb on - strand at 427.424 kb on - strand at 427.427 kb on + strand at 427.427 kb on + strand at 427.427 kb on + strand at 427.427 kb on + strand at 427.427 kb on + strand at 427.427 kb on + strand at 427.427 kb on + strand at 427.427 kb on + strand at 427.427 kb on + strand at 427.427 kb on + strand at 427.427 kb on + strand at 427.427 kb on + strand at 427.427 kb on + strand at 427.427 kb on + strand at 427.427 kb on + strand at 427.427 kb on + strand at 427.427 kb on + strand at 427.427 kb on + strand at 427.427 kb on + strand at 427.427 kb on + strand at 427.427 kb on + strand at 427.428 kb on - strand at 427.428 kb on - strand at 427.428 kb on - strand at 427.428 kb on - strand at 427.428 kb on - strand at 427.428 kb on - strand at 427.428 kb on - strand at 427.428 kb on - strand at 427.428 kb on - strand at 427.428 kb on - strand at 427.428 kb on - strand at 427.428 kb on - strand at 427.428 kb on - strand at 427.428 kb on - strand at 427.428 kb on - strand at 427.428 kb on - strand at 427.428 kb on - strand at 427.428 kb on - strand at 427.428 kb on - strand at 427.432 kb on - strand at 427.543 kb on + strand, within OHPLBJKB_00411 at 427.543 kb on + strand, within OHPLBJKB_00411 at 427.544 kb on - strand, within OHPLBJKB_00411 at 427.545 kb on + strand, within OHPLBJKB_00411 at 427.545 kb on + strand, within OHPLBJKB_00411 at 427.545 kb on + strand, within OHPLBJKB_00411 at 427.597 kb on + strand, within OHPLBJKB_00411 at 427.598 kb on - strand, within OHPLBJKB_00411 at 427.658 kb on + strand, within OHPLBJKB_00411 at 427.658 kb on + strand, within OHPLBJKB_00411 at 427.659 kb on - strand, within OHPLBJKB_00411 at 427.659 kb on - strand, within OHPLBJKB_00411 at 427.733 kb on + strand, within OHPLBJKB_00411 at 427.784 kb on + strand, within OHPLBJKB_00411 at 427.785 kb on - strand, within OHPLBJKB_00411 at 427.873 kb on + strand at 427.873 kb on + strand at 427.873 kb on + strand at 427.874 kb on - strand at 427.892 kb on - strand at 427.927 kb on - strand at 427.929 kb on + strand at 427.929 kb on + strand at 427.929 kb on + strand at 427.930 kb on - strand at 427.930 kb on - strand at 427.941 kb on - strand, within OHPLBJKB_00412 at 427.956 kb on - strand, within OHPLBJKB_00412 at 427.965 kb on - strand, within OHPLBJKB_00412 at 427.967 kb on + strand, within OHPLBJKB_00412 at 427.967 kb on + strand, within OHPLBJKB_00412 at 427.967 kb on + strand, within OHPLBJKB_00412 at 427.967 kb on + strand, within OHPLBJKB_00412 at 427.967 kb on + strand, within OHPLBJKB_00412 at 427.968 kb on - strand, within OHPLBJKB_00412 at 427.968 kb on - strand, within OHPLBJKB_00412 at 427.968 kb on - strand, within OHPLBJKB_00412 at 427.968 kb on - strand, within OHPLBJKB_00412 at 427.968 kb on - strand, within OHPLBJKB_00412 at 428.005 kb on - strand, within OHPLBJKB_00412 at 428.023 kb on + strand, within OHPLBJKB_00412 at 428.024 kb on - strand, within OHPLBJKB_00412 at 428.024 kb on - strand, within OHPLBJKB_00412 at 428.024 kb on - strand, within OHPLBJKB_00412 at 428.082 kb on - strand, within OHPLBJKB_00412 at 428.175 kb on + strand, within OHPLBJKB_00413 at 428.176 kb on - strand, within OHPLBJKB_00413 at 428.242 kb on - strand, within OHPLBJKB_00413 at 428.391 kb on + strand, within OHPLBJKB_00413 at 428.392 kb on - strand, within OHPLBJKB_00413 at 428.394 kb on + strand, within OHPLBJKB_00413 at 428.522 kb on + strand at 428.525 kb on + strand at 428.537 kb on + strand at 428.538 kb on - strand at 428.547 kb on - strand at 428.563 kb on + strand at 428.563 kb on + strand at 428.579 kb on + strand at 428.621 kb on + strand at 428.659 kb on - strand at 428.662 kb on - strand at 428.665 kb on + strand at 428.665 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction lib only remove 426,991 + +0.2 426,991 + -0.3 426,991 + -2.0 426,992 - -0.0 426,992 - -0.5 427,004 + -1.5 427,004 + -0.0 427,004 + +0.0 427,004 + +0.5 427,004 + +0.2 427,005 - -0.5 427,005 - +0.5 427,005 - -0.5 427,005 - -0.1 427,009 - +0.1 427,014 - -0.3 427,014 - -0.3 427,014 - +0.1 427,014 - -0.3 427,019 + +1.1 427,019 + -0.2 427,019 + -1.2 427,044 + +0.1 427,044 + -0.6 427,044 + +0.4 427,045 - -0.2 427,045 - -0.6 427,045 - -0.0 427,048 + +0.2 427,048 + +0.4 427,049 - -0.1 427,049 - -0.6 427,049 - -0.9 427,056 + -0.2 427,057 - +0.0 427,081 + -0.4 427,083 + -0.1 427,083 + +0.4 427,084 - +0.3 427,084 - -1.1 427,084 - -0.5 427,084 - -0.7 427,084 - -0.3 427,261 + OHPLBJKB_00410 0.57 +0.8 427,415 + -0.4 427,416 - -1.2 427,416 - -0.2 427,423 + -0.2 427,423 + -0.4 427,423 + -0.8 427,423 + -0.3 427,423 + -0.8 427,424 - +0.0 427,424 - -0.8 427,424 - -0.6 427,424 - +0.1 427,424 - -0.8 427,424 - +1.1 427,427 + -0.3 427,427 + +0.2 427,427 + -0.6 427,427 + +0.1 427,427 + -1.2 427,427 + -0.1 427,427 + +0.9 427,427 + +0.1 427,427 + +0.3 427,427 + -0.9 427,427 + -0.9 427,427 + -1.1 427,427 + -2.1 427,427 + -0.5 427,427 + +0.5 427,427 + -0.7 427,427 + -0.1 427,427 + +1.5 427,427 + -0.6 427,427 + -0.7 427,427 + -2.0 427,428 - -1.3 427,428 - +0.3 427,428 - -0.1 427,428 - -0.6 427,428 - -0.4 427,428 - +0.1 427,428 - -0.4 427,428 - +0.3 427,428 - -0.5 427,428 - +0.1 427,428 - -1.6 427,428 - -0.0 427,428 - -0.5 427,428 - +0.3 427,428 - -0.6 427,428 - +0.8 427,428 - -0.1 427,428 - +0.4 427,428 - -0.2 427,432 - -0.7 427,543 + OHPLBJKB_00411 0.27 +0.8 427,543 + OHPLBJKB_00411 0.27 -0.3 427,544 - OHPLBJKB_00411 0.27 +0.3 427,545 + OHPLBJKB_00411 0.27 -0.1 427,545 + OHPLBJKB_00411 0.27 -1.0 427,545 + OHPLBJKB_00411 0.27 -0.9 427,597 + OHPLBJKB_00411 0.40 -0.5 427,598 - OHPLBJKB_00411 0.40 +0.5 427,658 + OHPLBJKB_00411 0.54 +0.3 427,658 + OHPLBJKB_00411 0.54 -0.4 427,659 - OHPLBJKB_00411 0.54 +0.1 427,659 - OHPLBJKB_00411 0.54 -0.1 427,733 + OHPLBJKB_00411 0.72 -0.5 427,784 + OHPLBJKB_00411 0.84 -0.9 427,785 - OHPLBJKB_00411 0.84 -2.5 427,873 + +0.2 427,873 + +0.2 427,873 + +0.8 427,874 - +0.8 427,892 - +0.5 427,927 - -0.7 427,929 + +0.3 427,929 + +0.6 427,929 + +0.1 427,930 - -0.9 427,930 - +0.1 427,941 - OHPLBJKB_00412 0.15 -0.5 427,956 - OHPLBJKB_00412 0.21 +0.3 427,965 - OHPLBJKB_00412 0.26 -1.1 427,967 + OHPLBJKB_00412 0.26 +0.1 427,967 + OHPLBJKB_00412 0.26 -1.2 427,967 + OHPLBJKB_00412 0.26 -1.1 427,967 + OHPLBJKB_00412 0.26 -0.2 427,967 + OHPLBJKB_00412 0.26 -0.0 427,968 - OHPLBJKB_00412 0.27 -0.5 427,968 - OHPLBJKB_00412 0.27 +0.3 427,968 - OHPLBJKB_00412 0.27 +1.5 427,968 - OHPLBJKB_00412 0.27 -0.9 427,968 - OHPLBJKB_00412 0.27 +1.1 428,005 - OHPLBJKB_00412 0.44 +0.8 428,023 + OHPLBJKB_00412 0.52 +0.0 428,024 - OHPLBJKB_00412 0.53 -1.2 428,024 - OHPLBJKB_00412 0.53 -0.6 428,024 - OHPLBJKB_00412 0.53 +0.1 428,082 - OHPLBJKB_00412 0.79 -0.9 428,175 + OHPLBJKB_00413 0.12 +0.5 428,176 - OHPLBJKB_00413 0.13 +0.2 428,242 - OHPLBJKB_00413 0.29 +1.3 428,391 + OHPLBJKB_00413 0.65 -1.2 428,392 - OHPLBJKB_00413 0.65 -0.6 428,394 + OHPLBJKB_00413 0.66 +0.1 428,522 + -0.1 428,525 + -1.0 428,537 + +0.6 428,538 - +0.4 428,547 - -0.4 428,563 + -0.4 428,563 + -0.8 428,579 + +1.3 428,621 + -0.6 428,659 - -0.0 428,662 - -0.2 428,665 + +0.7 428,665 + -0.3
Or see this region's nucleotide sequence