Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00280

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00278 and OHPLBJKB_00279 are separated by 189 nucleotidesOHPLBJKB_00279 and OHPLBJKB_00280 are separated by 44 nucleotidesOHPLBJKB_00280 and OHPLBJKB_00281 are separated by 16 nucleotidesOHPLBJKB_00281 and OHPLBJKB_00282 overlap by 19 nucleotides OHPLBJKB_00278: OHPLBJKB_00278 - Aerobic glycerol-3-phosphate dehydrogenase, at 303,113 to 304,618 _00278 OHPLBJKB_00279: OHPLBJKB_00279 - Thiosulfate sulfurtransferase GlpE, at 304,808 to 305,134 _00279 OHPLBJKB_00280: OHPLBJKB_00280 - Rhomboid protease GlpG, at 305,179 to 306,009 _00280 OHPLBJKB_00281: OHPLBJKB_00281 - Glycerol-3-phosphate regulon repressor, at 306,026 to 306,784 _00281 OHPLBJKB_00282: OHPLBJKB_00282 - Anaerobic nitric oxide reductase transcription regulator NorR, at 306,766 to 308,358 _00282 Position (kb) 305 306 307Strain fitness (log2 ratio) -2 -1 0 1at 304.214 kb on - strand, within OHPLBJKB_00278at 304.226 kb on + strand, within OHPLBJKB_00278at 304.296 kb on + strand, within OHPLBJKB_00278at 304.297 kb on - strand, within OHPLBJKB_00278at 304.297 kb on - strand, within OHPLBJKB_00278at 304.297 kb on - strand, within OHPLBJKB_00278at 304.297 kb on - strand, within OHPLBJKB_00278at 304.300 kb on + strand, within OHPLBJKB_00278at 304.301 kb on - strand, within OHPLBJKB_00278at 304.301 kb on - strand, within OHPLBJKB_00278at 304.456 kb on - strand, within OHPLBJKB_00278at 304.650 kb on - strandat 304.670 kb on - strandat 304.690 kb on + strandat 304.722 kb on - strandat 304.722 kb on - strandat 304.725 kb on + strandat 304.725 kb on + strandat 304.726 kb on - strandat 304.743 kb on - strandat 304.743 kb on - strandat 304.825 kb on + strandat 304.826 kb on - strandat 304.826 kb on - strandat 304.828 kb on + strandat 304.828 kb on + strandat 304.829 kb on - strandat 304.936 kb on - strand, within OHPLBJKB_00279at 304.936 kb on - strand, within OHPLBJKB_00279at 304.960 kb on + strand, within OHPLBJKB_00279at 304.960 kb on + strand, within OHPLBJKB_00279at 304.960 kb on + strand, within OHPLBJKB_00279at 305.015 kb on - strand, within OHPLBJKB_00279at 305.036 kb on + strand, within OHPLBJKB_00279at 305.036 kb on + strand, within OHPLBJKB_00279at 305.036 kb on + strand, within OHPLBJKB_00279at 305.036 kb on + strand, within OHPLBJKB_00279at 305.066 kb on + strand, within OHPLBJKB_00279at 305.067 kb on - strand, within OHPLBJKB_00279at 305.067 kb on - strand, within OHPLBJKB_00279at 305.068 kb on + strand, within OHPLBJKB_00279at 305.140 kb on + strandat 305.140 kb on + strandat 305.141 kb on - strandat 305.141 kb on - strandat 305.141 kb on - strandat 305.142 kb on + strandat 305.142 kb on + strandat 305.143 kb on - strandat 305.143 kb on - strandat 305.143 kb on - strandat 305.191 kb on - strandat 305.233 kb on + strandat 305.233 kb on + strandat 305.234 kb on - strandat 305.234 kb on - strandat 305.234 kb on - strandat 305.274 kb on + strand, within OHPLBJKB_00280at 305.540 kb on + strand, within OHPLBJKB_00280at 305.591 kb on - strand, within OHPLBJKB_00280at 305.629 kb on - strand, within OHPLBJKB_00280at 305.656 kb on + strand, within OHPLBJKB_00280at 305.656 kb on + strand, within OHPLBJKB_00280at 305.700 kb on - strand, within OHPLBJKB_00280at 305.700 kb on - strand, within OHPLBJKB_00280at 305.700 kb on - strand, within OHPLBJKB_00280at 305.700 kb on - strand, within OHPLBJKB_00280at 305.709 kb on + strand, within OHPLBJKB_00280at 305.710 kb on - strand, within OHPLBJKB_00280at 305.710 kb on - strand, within OHPLBJKB_00280at 305.738 kb on - strand, within OHPLBJKB_00280at 305.791 kb on + strand, within OHPLBJKB_00280at 305.791 kb on + strand, within OHPLBJKB_00280at 305.791 kb on + strand, within OHPLBJKB_00280at 305.791 kb on + strand, within OHPLBJKB_00280at 305.792 kb on - strand, within OHPLBJKB_00280at 305.792 kb on - strand, within OHPLBJKB_00280at 305.816 kb on + strand, within OHPLBJKB_00280at 305.817 kb on - strand, within OHPLBJKB_00280at 305.848 kb on + strand, within OHPLBJKB_00280at 305.848 kb on + strand, within OHPLBJKB_00280at 305.848 kb on + strand, within OHPLBJKB_00280at 305.864 kb on + strand, within OHPLBJKB_00280at 305.868 kb on + strand, within OHPLBJKB_00280at 305.868 kb on + strand, within OHPLBJKB_00280at 305.868 kb on + strand, within OHPLBJKB_00280at 306.008 kb on - strandat 306.008 kb on - strandat 306.021 kb on + strandat 306.022 kb on - strandat 306.022 kb on - strandat 306.023 kb on + strandat 306.023 kb on + strandat 306.023 kb on + strandat 306.024 kb on - strandat 306.024 kb on - strandat 306.024 kb on - strandat 306.052 kb on + strandat 306.053 kb on - strandat 306.067 kb on + strandat 306.080 kb on + strandat 306.080 kb on + strandat 306.081 kb on - strandat 306.081 kb on - strandat 306.081 kb on - strandat 306.081 kb on - strandat 306.130 kb on + strand, within OHPLBJKB_00281at 306.215 kb on - strand, within OHPLBJKB_00281at 306.314 kb on - strand, within OHPLBJKB_00281at 306.417 kb on + strand, within OHPLBJKB_00281at 306.456 kb on + strand, within OHPLBJKB_00281at 306.457 kb on - strand, within OHPLBJKB_00281at 306.540 kb on + strand, within OHPLBJKB_00281at 306.632 kb on - strand, within OHPLBJKB_00281at 306.699 kb on + strand, within OHPLBJKB_00281at 306.699 kb on + strand, within OHPLBJKB_00281at 306.699 kb on + strand, within OHPLBJKB_00281at 306.699 kb on + strand, within OHPLBJKB_00281at 306.699 kb on + strand, within OHPLBJKB_00281at 306.699 kb on + strand, within OHPLBJKB_00281at 306.699 kb on + strand, within OHPLBJKB_00281at 306.699 kb on + strand, within OHPLBJKB_00281at 306.699 kb on + strand, within OHPLBJKB_00281at 306.700 kb on - strand, within OHPLBJKB_00281at 306.700 kb on - strand, within OHPLBJKB_00281at 306.700 kb on - strand, within OHPLBJKB_00281at 306.700 kb on - strand, within OHPLBJKB_00281at 306.710 kb on + strandat 306.711 kb on - strandat 306.733 kb on - strandat 306.763 kb on + strandat 306.825 kb on - strandat 306.951 kb on + strand, within OHPLBJKB_00282at 306.951 kb on + strand, within OHPLBJKB_00282at 306.952 kb on - strand, within OHPLBJKB_00282

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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304,214 - OHPLBJKB_00278 0.73 -0.4
304,226 + OHPLBJKB_00278 0.74 -0.5
304,296 + OHPLBJKB_00278 0.79 +1.1
304,297 - OHPLBJKB_00278 0.79 -0.9
304,297 - OHPLBJKB_00278 0.79 -1.4
304,297 - OHPLBJKB_00278 0.79 -2.4
304,297 - OHPLBJKB_00278 0.79 -0.1
304,300 + OHPLBJKB_00278 0.79 -0.5
304,301 - OHPLBJKB_00278 0.79 -1.7
304,301 - OHPLBJKB_00278 0.79 -2.3
304,456 - OHPLBJKB_00278 0.89 -0.9
304,650 - -1.1
304,670 - +0.4
304,690 + -0.8
304,722 - +0.2
304,722 - +0.5
304,725 + +0.5
304,725 + -0.4
304,726 - +0.7
304,743 - +1.5
304,743 - -0.6
304,825 + -0.7
304,826 - -0.5
304,826 - +0.4
304,828 + -1.9
304,828 + -0.5
304,829 - +0.4
304,936 - OHPLBJKB_00279 0.39 +0.1
304,936 - OHPLBJKB_00279 0.39 -0.0
304,960 + OHPLBJKB_00279 0.46 -0.5
304,960 + OHPLBJKB_00279 0.46 -0.2
304,960 + OHPLBJKB_00279 0.46 +0.1
305,015 - OHPLBJKB_00279 0.63 +0.0
305,036 + OHPLBJKB_00279 0.70 +0.7
305,036 + OHPLBJKB_00279 0.70 -0.6
305,036 + OHPLBJKB_00279 0.70 +0.3
305,036 + OHPLBJKB_00279 0.70 -1.7
305,066 + OHPLBJKB_00279 0.79 -0.4
305,067 - OHPLBJKB_00279 0.79 -1.5
305,067 - OHPLBJKB_00279 0.79 +0.0
305,068 + OHPLBJKB_00279 0.80 +1.1
305,140 + +0.1
305,140 + -0.5
305,141 - -0.8
305,141 - -0.0
305,141 - +0.4
305,142 + +0.0
305,142 + +0.5
305,143 - +0.5
305,143 - -1.0
305,143 - +0.1
305,191 - -0.0
305,233 + -0.9
305,233 + +0.1
305,234 - -2.1
305,234 - +0.4
305,234 - -0.7
305,274 + OHPLBJKB_00280 0.11 +0.2
305,540 + OHPLBJKB_00280 0.43 -1.5
305,591 - OHPLBJKB_00280 0.50 +0.1
305,629 - OHPLBJKB_00280 0.54 +0.1
305,656 + OHPLBJKB_00280 0.57 -0.7
305,656 + OHPLBJKB_00280 0.57 +1.5
305,700 - OHPLBJKB_00280 0.63 +0.2
305,700 - OHPLBJKB_00280 0.63 -0.2
305,700 - OHPLBJKB_00280 0.63 -1.1
305,700 - OHPLBJKB_00280 0.63 +0.1
305,709 + OHPLBJKB_00280 0.64 -0.1
305,710 - OHPLBJKB_00280 0.64 -0.7
305,710 - OHPLBJKB_00280 0.64 -0.6
305,738 - OHPLBJKB_00280 0.67 -0.5
305,791 + OHPLBJKB_00280 0.74 -0.0
305,791 + OHPLBJKB_00280 0.74 -0.3
305,791 + OHPLBJKB_00280 0.74 -0.3
305,791 + OHPLBJKB_00280 0.74 +0.3
305,792 - OHPLBJKB_00280 0.74 -1.1
305,792 - OHPLBJKB_00280 0.74 -1.2
305,816 + OHPLBJKB_00280 0.77 +0.8
305,817 - OHPLBJKB_00280 0.77 -0.6
305,848 + OHPLBJKB_00280 0.81 +0.6
305,848 + OHPLBJKB_00280 0.81 -0.2
305,848 + OHPLBJKB_00280 0.81 +0.9
305,864 + OHPLBJKB_00280 0.82 +0.0
305,868 + OHPLBJKB_00280 0.83 -0.1
305,868 + OHPLBJKB_00280 0.83 -0.1
305,868 + OHPLBJKB_00280 0.83 -0.2
306,008 - +0.3
306,008 - -0.1
306,021 + -0.3
306,022 - -0.1
306,022 - -0.3
306,023 + -0.5
306,023 + -0.7
306,023 + -0.1
306,024 - -0.3
306,024 - -0.2
306,024 - +0.1
306,052 + +0.1
306,053 - +0.0
306,067 + -1.2
306,080 + -0.2
306,080 + +0.3
306,081 - +0.5
306,081 - -1.1
306,081 - -0.5
306,081 - -1.2
306,130 + OHPLBJKB_00281 0.14 +0.4
306,215 - OHPLBJKB_00281 0.25 -1.4
306,314 - OHPLBJKB_00281 0.38 -0.4
306,417 + OHPLBJKB_00281 0.52 +0.5
306,456 + OHPLBJKB_00281 0.57 -0.8
306,457 - OHPLBJKB_00281 0.57 +1.0
306,540 + OHPLBJKB_00281 0.68 +0.7
306,632 - OHPLBJKB_00281 0.80 -0.5
306,699 + OHPLBJKB_00281 0.89 -0.0
306,699 + OHPLBJKB_00281 0.89 -0.0
306,699 + OHPLBJKB_00281 0.89 -1.6
306,699 + OHPLBJKB_00281 0.89 +0.6
306,699 + OHPLBJKB_00281 0.89 -1.1
306,699 + OHPLBJKB_00281 0.89 +0.4
306,699 + OHPLBJKB_00281 0.89 +0.2
306,699 + OHPLBJKB_00281 0.89 -0.6
306,699 + OHPLBJKB_00281 0.89 -1.0
306,700 - OHPLBJKB_00281 0.89 -1.0
306,700 - OHPLBJKB_00281 0.89 -0.5
306,700 - OHPLBJKB_00281 0.89 +0.3
306,700 - OHPLBJKB_00281 0.89 -0.1
306,710 + -1.7
306,711 - +1.4
306,733 - -0.5
306,763 + -0.2
306,825 - -0.5
306,951 + OHPLBJKB_00282 0.12 +0.6
306,951 + OHPLBJKB_00282 0.12 +0.4
306,952 - OHPLBJKB_00282 0.12 +0.5

Or see this region's nucleotide sequence