Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00277

Experiment: lib only

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_00276 and OHPLBJKB_00277 overlap by 1 nucleotidesOHPLBJKB_00277 and OHPLBJKB_00278 are separated by 215 nucleotides OHPLBJKB_00276: OHPLBJKB_00276 - hypothetical protein, at 301,303 to 302,295 _00276 OHPLBJKB_00277: OHPLBJKB_00277 - hypothetical protein, at 302,295 to 302,897 _00277 OHPLBJKB_00278: OHPLBJKB_00278 - Aerobic glycerol-3-phosphate dehydrogenase, at 303,113 to 304,618 _00278 Position (kb) 302 303Strain fitness (log2 ratio) -2 -1 0 1 2at 301.332 kb on - strandat 301.332 kb on - strandat 301.372 kb on + strandat 301.375 kb on + strandat 301.375 kb on + strandat 301.376 kb on - strandat 301.376 kb on - strandat 301.378 kb on - strandat 301.378 kb on - strandat 301.436 kb on + strand, within OHPLBJKB_00276at 301.436 kb on + strand, within OHPLBJKB_00276at 301.437 kb on - strand, within OHPLBJKB_00276at 301.474 kb on + strand, within OHPLBJKB_00276at 301.490 kb on + strand, within OHPLBJKB_00276at 301.491 kb on - strand, within OHPLBJKB_00276at 301.491 kb on - strand, within OHPLBJKB_00276at 301.492 kb on + strand, within OHPLBJKB_00276at 301.492 kb on + strand, within OHPLBJKB_00276at 301.492 kb on + strand, within OHPLBJKB_00276at 301.514 kb on - strand, within OHPLBJKB_00276at 301.514 kb on - strand, within OHPLBJKB_00276at 301.518 kb on + strand, within OHPLBJKB_00276at 301.523 kb on + strand, within OHPLBJKB_00276at 301.523 kb on + strand, within OHPLBJKB_00276at 301.523 kb on + strand, within OHPLBJKB_00276at 301.524 kb on - strand, within OHPLBJKB_00276at 301.621 kb on - strand, within OHPLBJKB_00276at 301.750 kb on - strand, within OHPLBJKB_00276at 301.845 kb on + strand, within OHPLBJKB_00276at 301.846 kb on - strand, within OHPLBJKB_00276at 301.847 kb on + strand, within OHPLBJKB_00276at 301.848 kb on - strand, within OHPLBJKB_00276at 302.029 kb on + strand, within OHPLBJKB_00276at 302.029 kb on + strand, within OHPLBJKB_00276at 302.029 kb on + strand, within OHPLBJKB_00276at 302.030 kb on - strand, within OHPLBJKB_00276at 302.040 kb on + strand, within OHPLBJKB_00276at 302.053 kb on - strand, within OHPLBJKB_00276at 302.090 kb on + strand, within OHPLBJKB_00276at 302.091 kb on - strand, within OHPLBJKB_00276at 302.155 kb on + strand, within OHPLBJKB_00276at 302.158 kb on - strand, within OHPLBJKB_00276at 302.158 kb on - strand, within OHPLBJKB_00276at 302.213 kb on + strandat 302.213 kb on + strandat 302.214 kb on - strandat 302.251 kb on + strandat 302.251 kb on + strandat 302.252 kb on - strandat 302.263 kb on + strandat 302.264 kb on - strandat 302.303 kb on + strandat 302.394 kb on - strand, within OHPLBJKB_00277at 302.544 kb on - strand, within OHPLBJKB_00277at 302.601 kb on + strand, within OHPLBJKB_00277at 302.605 kb on + strand, within OHPLBJKB_00277at 302.791 kb on - strand, within OHPLBJKB_00277at 302.814 kb on - strand, within OHPLBJKB_00277at 302.855 kb on - strandat 302.865 kb on - strandat 302.865 kb on - strandat 302.915 kb on + strandat 303.003 kb on + strandat 303.006 kb on - strandat 303.006 kb on - strandat 303.021 kb on + strandat 303.021 kb on + strandat 303.037 kb on - strandat 303.104 kb on + strandat 303.105 kb on - strandat 303.109 kb on + strandat 303.143 kb on - strandat 303.143 kb on - strandat 303.143 kb on - strandat 303.189 kb on - strandat 303.279 kb on + strand, within OHPLBJKB_00278at 303.427 kb on - strand, within OHPLBJKB_00278at 303.427 kb on - strand, within OHPLBJKB_00278at 303.512 kb on + strand, within OHPLBJKB_00278at 303.608 kb on - strand, within OHPLBJKB_00278at 303.682 kb on - strand, within OHPLBJKB_00278at 303.731 kb on - strand, within OHPLBJKB_00278at 303.731 kb on - strand, within OHPLBJKB_00278at 303.732 kb on + strand, within OHPLBJKB_00278at 303.732 kb on + strand, within OHPLBJKB_00278at 303.732 kb on + strand, within OHPLBJKB_00278at 303.733 kb on - strand, within OHPLBJKB_00278at 303.856 kb on + strand, within OHPLBJKB_00278at 303.856 kb on + strand, within OHPLBJKB_00278at 303.856 kb on + strand, within OHPLBJKB_00278at 303.857 kb on - strand, within OHPLBJKB_00278at 303.857 kb on - strand, within OHPLBJKB_00278at 303.857 kb on - strand, within OHPLBJKB_00278at 303.863 kb on - strand, within OHPLBJKB_00278at 303.882 kb on + strand, within OHPLBJKB_00278at 303.883 kb on - strand, within OHPLBJKB_00278at 303.883 kb on - strand, within OHPLBJKB_00278

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction lib only
remove
301,332 - -0.5
301,332 - -1.0
301,372 + -1.4
301,375 + -0.8
301,375 + +1.2
301,376 - -0.3
301,376 - -1.1
301,378 - -0.6
301,378 - +0.8
301,436 + OHPLBJKB_00276 0.13 +1.1
301,436 + OHPLBJKB_00276 0.13 +2.1
301,437 - OHPLBJKB_00276 0.13 -0.3
301,474 + OHPLBJKB_00276 0.17 +0.4
301,490 + OHPLBJKB_00276 0.19 -0.4
301,491 - OHPLBJKB_00276 0.19 -0.2
301,491 - OHPLBJKB_00276 0.19 -0.2
301,492 + OHPLBJKB_00276 0.19 -0.7
301,492 + OHPLBJKB_00276 0.19 -1.2
301,492 + OHPLBJKB_00276 0.19 -1.0
301,514 - OHPLBJKB_00276 0.21 -0.5
301,514 - OHPLBJKB_00276 0.21 -0.1
301,518 + OHPLBJKB_00276 0.22 -0.8
301,523 + OHPLBJKB_00276 0.22 -0.7
301,523 + OHPLBJKB_00276 0.22 +1.1
301,523 + OHPLBJKB_00276 0.22 -0.4
301,524 - OHPLBJKB_00276 0.22 +0.3
301,621 - OHPLBJKB_00276 0.32 -1.0
301,750 - OHPLBJKB_00276 0.45 -0.0
301,845 + OHPLBJKB_00276 0.55 +0.1
301,846 - OHPLBJKB_00276 0.55 -0.1
301,847 + OHPLBJKB_00276 0.55 -2.1
301,848 - OHPLBJKB_00276 0.55 -0.2
302,029 + OHPLBJKB_00276 0.73 +0.1
302,029 + OHPLBJKB_00276 0.73 +0.2
302,029 + OHPLBJKB_00276 0.73 -0.0
302,030 - OHPLBJKB_00276 0.73 -0.4
302,040 + OHPLBJKB_00276 0.74 +0.0
302,053 - OHPLBJKB_00276 0.76 +0.2
302,090 + OHPLBJKB_00276 0.79 +0.3
302,091 - OHPLBJKB_00276 0.79 -0.6
302,155 + OHPLBJKB_00276 0.86 +0.5
302,158 - OHPLBJKB_00276 0.86 -0.1
302,158 - OHPLBJKB_00276 0.86 -1.5
302,213 + +0.9
302,213 + -0.3
302,214 - -1.2
302,251 + +0.4
302,251 + +0.0
302,252 - +0.1
302,263 + -0.3
302,264 - -0.7
302,303 + -0.6
302,394 - OHPLBJKB_00277 0.16 -0.2
302,544 - OHPLBJKB_00277 0.41 -0.4
302,601 + OHPLBJKB_00277 0.51 -0.6
302,605 + OHPLBJKB_00277 0.51 -0.5
302,791 - OHPLBJKB_00277 0.82 -0.3
302,814 - OHPLBJKB_00277 0.86 -1.1
302,855 - -0.4
302,865 - -0.7
302,865 - +1.4
302,915 + +1.0
303,003 + -0.8
303,006 - +0.5
303,006 - -0.1
303,021 + +0.9
303,021 + +0.9
303,037 - -0.0
303,104 + -0.4
303,105 - +1.4
303,109 + -0.3
303,143 - -0.5
303,143 - +1.1
303,143 - +1.8
303,189 - -0.6
303,279 + OHPLBJKB_00278 0.11 -1.4
303,427 - OHPLBJKB_00278 0.21 -0.7
303,427 - OHPLBJKB_00278 0.21 -2.5
303,512 + OHPLBJKB_00278 0.26 -0.7
303,608 - OHPLBJKB_00278 0.33 -1.6
303,682 - OHPLBJKB_00278 0.38 -1.2
303,731 - OHPLBJKB_00278 0.41 -1.2
303,731 - OHPLBJKB_00278 0.41 -0.5
303,732 + OHPLBJKB_00278 0.41 -1.1
303,732 + OHPLBJKB_00278 0.41 -0.7
303,732 + OHPLBJKB_00278 0.41 -1.4
303,733 - OHPLBJKB_00278 0.41 -2.2
303,856 + OHPLBJKB_00278 0.49 -1.4
303,856 + OHPLBJKB_00278 0.49 -1.8
303,856 + OHPLBJKB_00278 0.49 -1.0
303,857 - OHPLBJKB_00278 0.49 -2.1
303,857 - OHPLBJKB_00278 0.49 -1.1
303,857 - OHPLBJKB_00278 0.49 -2.0
303,863 - OHPLBJKB_00278 0.50 -0.5
303,882 + OHPLBJKB_00278 0.51 -1.2
303,883 - OHPLBJKB_00278 0.51 -0.5
303,883 - OHPLBJKB_00278 0.51 -1.1

Or see this region's nucleotide sequence