Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00164

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00163 and OHPLBJKB_00164 are separated by 9 nucleotidesOHPLBJKB_00164 and OHPLBJKB_00165 are separated by 10 nucleotidesOHPLBJKB_00165 and OHPLBJKB_00166 overlap by 4 nucleotides OHPLBJKB_00163: OHPLBJKB_00163 - Dipeptide transport system permease protein DppB, at 175,640 to 176,659 _00163 OHPLBJKB_00164: OHPLBJKB_00164 - Dipeptide transport system permease protein DppC, at 176,669 to 177,571 _00164 OHPLBJKB_00165: OHPLBJKB_00165 - Dipeptide transport ATP-binding protein DppD, at 177,582 to 178,565 _00165 OHPLBJKB_00166: OHPLBJKB_00166 - Oligopeptide transport ATP-binding protein OppF, at 178,562 to 179,566 _00166 Position (kb) 176 177 178Strain fitness (log2 ratio) -2 -1 0 1 2at 175.696 kb on + strandat 175.697 kb on - strandat 175.816 kb on + strand, within OHPLBJKB_00163at 175.816 kb on + strand, within OHPLBJKB_00163at 175.816 kb on + strand, within OHPLBJKB_00163at 175.817 kb on - strand, within OHPLBJKB_00163at 175.817 kb on - strand, within OHPLBJKB_00163at 175.817 kb on - strand, within OHPLBJKB_00163at 175.835 kb on + strand, within OHPLBJKB_00163at 175.836 kb on - strand, within OHPLBJKB_00163at 175.844 kb on + strand, within OHPLBJKB_00163at 175.844 kb on + strand, within OHPLBJKB_00163at 175.844 kb on + strand, within OHPLBJKB_00163at 175.845 kb on - strand, within OHPLBJKB_00163at 175.845 kb on - strand, within OHPLBJKB_00163at 175.845 kb on - strand, within OHPLBJKB_00163at 175.873 kb on - strand, within OHPLBJKB_00163at 176.071 kb on + strand, within OHPLBJKB_00163at 176.071 kb on + strand, within OHPLBJKB_00163at 176.197 kb on - strand, within OHPLBJKB_00163at 176.233 kb on + strand, within OHPLBJKB_00163at 176.279 kb on - strand, within OHPLBJKB_00163at 176.281 kb on + strand, within OHPLBJKB_00163at 176.281 kb on + strand, within OHPLBJKB_00163at 176.305 kb on + strand, within OHPLBJKB_00163at 176.345 kb on + strand, within OHPLBJKB_00163at 176.345 kb on + strand, within OHPLBJKB_00163at 176.345 kb on + strand, within OHPLBJKB_00163at 176.346 kb on - strand, within OHPLBJKB_00163at 176.568 kb on + strandat 176.741 kb on + strandat 176.741 kb on + strandat 176.780 kb on + strand, within OHPLBJKB_00164at 176.831 kb on + strand, within OHPLBJKB_00164at 176.831 kb on + strand, within OHPLBJKB_00164at 176.831 kb on + strand, within OHPLBJKB_00164at 176.831 kb on + strand, within OHPLBJKB_00164at 176.832 kb on - strand, within OHPLBJKB_00164at 176.832 kb on - strand, within OHPLBJKB_00164at 176.832 kb on - strand, within OHPLBJKB_00164at 176.832 kb on - strand, within OHPLBJKB_00164at 176.926 kb on - strand, within OHPLBJKB_00164at 176.954 kb on + strand, within OHPLBJKB_00164at 176.955 kb on - strand, within OHPLBJKB_00164at 176.955 kb on - strand, within OHPLBJKB_00164at 176.955 kb on - strand, within OHPLBJKB_00164at 176.955 kb on - strand, within OHPLBJKB_00164at 177.194 kb on + strand, within OHPLBJKB_00164at 177.194 kb on + strand, within OHPLBJKB_00164at 177.194 kb on + strand, within OHPLBJKB_00164at 177.194 kb on + strand, within OHPLBJKB_00164at 177.195 kb on - strand, within OHPLBJKB_00164at 177.195 kb on - strand, within OHPLBJKB_00164at 177.195 kb on - strand, within OHPLBJKB_00164at 177.195 kb on - strand, within OHPLBJKB_00164at 177.195 kb on - strand, within OHPLBJKB_00164at 177.243 kb on - strand, within OHPLBJKB_00164at 177.293 kb on - strand, within OHPLBJKB_00164at 177.293 kb on - strand, within OHPLBJKB_00164at 177.518 kb on - strandat 177.518 kb on - strandat 177.569 kb on + strandat 177.592 kb on + strandat 177.593 kb on - strandat 177.593 kb on - strandat 177.593 kb on - strandat 177.603 kb on - strandat 177.671 kb on - strandat 177.740 kb on + strand, within OHPLBJKB_00165at 177.740 kb on + strand, within OHPLBJKB_00165at 177.812 kb on + strand, within OHPLBJKB_00165at 177.812 kb on + strand, within OHPLBJKB_00165at 177.813 kb on - strand, within OHPLBJKB_00165at 177.813 kb on - strand, within OHPLBJKB_00165at 177.897 kb on + strand, within OHPLBJKB_00165at 178.165 kb on + strand, within OHPLBJKB_00165at 178.166 kb on - strand, within OHPLBJKB_00165at 178.177 kb on + strand, within OHPLBJKB_00165at 178.177 kb on + strand, within OHPLBJKB_00165at 178.207 kb on + strand, within OHPLBJKB_00165at 178.207 kb on + strand, within OHPLBJKB_00165at 178.208 kb on - strand, within OHPLBJKB_00165at 178.208 kb on - strand, within OHPLBJKB_00165at 178.212 kb on - strand, within OHPLBJKB_00165at 178.212 kb on - strand, within OHPLBJKB_00165at 178.212 kb on - strand, within OHPLBJKB_00165at 178.247 kb on + strand, within OHPLBJKB_00165at 178.248 kb on - strand, within OHPLBJKB_00165at 178.263 kb on + strand, within OHPLBJKB_00165at 178.263 kb on + strand, within OHPLBJKB_00165at 178.263 kb on + strand, within OHPLBJKB_00165at 178.263 kb on + strand, within OHPLBJKB_00165at 178.263 kb on + strand, within OHPLBJKB_00165at 178.263 kb on + strand, within OHPLBJKB_00165at 178.263 kb on + strand, within OHPLBJKB_00165at 178.264 kb on - strand, within OHPLBJKB_00165at 178.264 kb on - strand, within OHPLBJKB_00165at 178.264 kb on - strand, within OHPLBJKB_00165at 178.264 kb on - strand, within OHPLBJKB_00165at 178.327 kb on - strand, within OHPLBJKB_00165at 178.329 kb on - strand, within OHPLBJKB_00165at 178.414 kb on - strand, within OHPLBJKB_00165at 178.455 kb on + strand, within OHPLBJKB_00165at 178.496 kb on + strandat 178.497 kb on - strandat 178.561 kb on + strandat 178.561 kb on + strandat 178.562 kb on - strandat 178.562 kb on - strandat 178.562 kb on - strandat 178.562 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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175,696 + +0.0
175,697 - -0.5
175,816 + OHPLBJKB_00163 0.17 +0.1
175,816 + OHPLBJKB_00163 0.17 +0.6
175,816 + OHPLBJKB_00163 0.17 -0.6
175,817 - OHPLBJKB_00163 0.17 +0.2
175,817 - OHPLBJKB_00163 0.17 -0.5
175,817 - OHPLBJKB_00163 0.17 +0.2
175,835 + OHPLBJKB_00163 0.19 +0.2
175,836 - OHPLBJKB_00163 0.19 -0.2
175,844 + OHPLBJKB_00163 0.20 +0.5
175,844 + OHPLBJKB_00163 0.20 +0.4
175,844 + OHPLBJKB_00163 0.20 +0.2
175,845 - OHPLBJKB_00163 0.20 +0.3
175,845 - OHPLBJKB_00163 0.20 +0.3
175,845 - OHPLBJKB_00163 0.20 -0.3
175,873 - OHPLBJKB_00163 0.23 -0.2
176,071 + OHPLBJKB_00163 0.42 -1.5
176,071 + OHPLBJKB_00163 0.42 +0.2
176,197 - OHPLBJKB_00163 0.55 -0.2
176,233 + OHPLBJKB_00163 0.58 +0.2
176,279 - OHPLBJKB_00163 0.63 +0.3
176,281 + OHPLBJKB_00163 0.63 +0.2
176,281 + OHPLBJKB_00163 0.63 +1.9
176,305 + OHPLBJKB_00163 0.65 +0.3
176,345 + OHPLBJKB_00163 0.69 +0.4
176,345 + OHPLBJKB_00163 0.69 -1.6
176,345 + OHPLBJKB_00163 0.69 +0.1
176,346 - OHPLBJKB_00163 0.69 +0.9
176,568 + -0.3
176,741 + +0.1
176,741 + -0.4
176,780 + OHPLBJKB_00164 0.12 -1.8
176,831 + OHPLBJKB_00164 0.18 +0.1
176,831 + OHPLBJKB_00164 0.18 -0.2
176,831 + OHPLBJKB_00164 0.18 -0.2
176,831 + OHPLBJKB_00164 0.18 +0.3
176,832 - OHPLBJKB_00164 0.18 -0.8
176,832 - OHPLBJKB_00164 0.18 +0.8
176,832 - OHPLBJKB_00164 0.18 +0.0
176,832 - OHPLBJKB_00164 0.18 -0.2
176,926 - OHPLBJKB_00164 0.28 -1.0
176,954 + OHPLBJKB_00164 0.32 -0.8
176,955 - OHPLBJKB_00164 0.32 -0.7
176,955 - OHPLBJKB_00164 0.32 -1.6
176,955 - OHPLBJKB_00164 0.32 -0.9
176,955 - OHPLBJKB_00164 0.32 -0.8
177,194 + OHPLBJKB_00164 0.58 +0.7
177,194 + OHPLBJKB_00164 0.58 -0.1
177,194 + OHPLBJKB_00164 0.58 +0.4
177,194 + OHPLBJKB_00164 0.58 +0.1
177,195 - OHPLBJKB_00164 0.58 +0.4
177,195 - OHPLBJKB_00164 0.58 -0.7
177,195 - OHPLBJKB_00164 0.58 +0.2
177,195 - OHPLBJKB_00164 0.58 -1.0
177,195 - OHPLBJKB_00164 0.58 +0.4
177,243 - OHPLBJKB_00164 0.64 -0.3
177,293 - OHPLBJKB_00164 0.69 +0.2
177,293 - OHPLBJKB_00164 0.69 -0.5
177,518 - -0.5
177,518 - +0.4
177,569 + -0.9
177,592 + +0.3
177,593 - -0.0
177,593 - -0.2
177,593 - -0.3
177,603 - +0.1
177,671 - +0.4
177,740 + OHPLBJKB_00165 0.16 +1.6
177,740 + OHPLBJKB_00165 0.16 -0.1
177,812 + OHPLBJKB_00165 0.23 +0.1
177,812 + OHPLBJKB_00165 0.23 -0.6
177,813 - OHPLBJKB_00165 0.23 +0.3
177,813 - OHPLBJKB_00165 0.23 +0.8
177,897 + OHPLBJKB_00165 0.32 +0.0
178,165 + OHPLBJKB_00165 0.59 -0.7
178,166 - OHPLBJKB_00165 0.59 -0.4
178,177 + OHPLBJKB_00165 0.60 -0.8
178,177 + OHPLBJKB_00165 0.60 +0.2
178,207 + OHPLBJKB_00165 0.64 +1.1
178,207 + OHPLBJKB_00165 0.64 -0.3
178,208 - OHPLBJKB_00165 0.64 -0.5
178,208 - OHPLBJKB_00165 0.64 -0.1
178,212 - OHPLBJKB_00165 0.64 -0.2
178,212 - OHPLBJKB_00165 0.64 -0.2
178,212 - OHPLBJKB_00165 0.64 +0.5
178,247 + OHPLBJKB_00165 0.68 +0.3
178,248 - OHPLBJKB_00165 0.68 +0.8
178,263 + OHPLBJKB_00165 0.69 +0.5
178,263 + OHPLBJKB_00165 0.69 -0.8
178,263 + OHPLBJKB_00165 0.69 +0.3
178,263 + OHPLBJKB_00165 0.69 +0.2
178,263 + OHPLBJKB_00165 0.69 -0.3
178,263 + OHPLBJKB_00165 0.69 +0.1
178,263 + OHPLBJKB_00165 0.69 -0.4
178,264 - OHPLBJKB_00165 0.69 -0.1
178,264 - OHPLBJKB_00165 0.69 +0.5
178,264 - OHPLBJKB_00165 0.69 +0.1
178,264 - OHPLBJKB_00165 0.69 +0.7
178,327 - OHPLBJKB_00165 0.76 -0.1
178,329 - OHPLBJKB_00165 0.76 +0.1
178,414 - OHPLBJKB_00165 0.85 -0.7
178,455 + OHPLBJKB_00165 0.89 -0.3
178,496 + +0.1
178,497 - -0.3
178,561 + -0.3
178,561 + -0.8
178,562 - -1.0
178,562 - +0.6
178,562 - -0.2
178,562 - +0.2

Or see this region's nucleotide sequence