Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00139

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00138 and OHPLBJKB_00139 are separated by 365 nucleotidesOHPLBJKB_00139 and OHPLBJKB_00140 are separated by 71 nucleotides OHPLBJKB_00138: OHPLBJKB_00138 - D-xylose-binding periplasmic protein, at 149,475 to 150,467 _00138 OHPLBJKB_00139: OHPLBJKB_00139 - Xylose isomerase, at 150,833 to 152,155 _00139 OHPLBJKB_00140: OHPLBJKB_00140 - Xylulose kinase, at 152,227 to 153,681 _00140 Position (kb) 150 151 152 153Strain fitness (log2 ratio) -3 -2 -1 0 1at 149.993 kb on + strand, within OHPLBJKB_00138at 149.994 kb on - strand, within OHPLBJKB_00138at 150.134 kb on - strand, within OHPLBJKB_00138at 150.179 kb on + strand, within OHPLBJKB_00138at 150.199 kb on + strand, within OHPLBJKB_00138at 150.200 kb on - strand, within OHPLBJKB_00138at 150.332 kb on + strand, within OHPLBJKB_00138at 150.447 kb on + strandat 150.473 kb on - strandat 150.502 kb on - strandat 150.504 kb on + strandat 150.812 kb on + strandat 150.911 kb on + strandat 150.974 kb on + strand, within OHPLBJKB_00139at 151.027 kb on + strand, within OHPLBJKB_00139at 151.075 kb on + strand, within OHPLBJKB_00139at 151.076 kb on - strand, within OHPLBJKB_00139at 151.110 kb on + strand, within OHPLBJKB_00139at 151.110 kb on + strand, within OHPLBJKB_00139at 151.110 kb on + strand, within OHPLBJKB_00139at 151.110 kb on + strand, within OHPLBJKB_00139at 151.110 kb on + strand, within OHPLBJKB_00139at 151.111 kb on - strand, within OHPLBJKB_00139at 151.111 kb on - strand, within OHPLBJKB_00139at 151.111 kb on - strand, within OHPLBJKB_00139at 151.111 kb on - strand, within OHPLBJKB_00139at 151.125 kb on - strand, within OHPLBJKB_00139at 151.175 kb on + strand, within OHPLBJKB_00139at 151.176 kb on - strand, within OHPLBJKB_00139at 151.176 kb on - strand, within OHPLBJKB_00139at 151.176 kb on - strand, within OHPLBJKB_00139at 151.267 kb on + strand, within OHPLBJKB_00139at 151.345 kb on + strand, within OHPLBJKB_00139at 151.385 kb on + strand, within OHPLBJKB_00139at 151.385 kb on + strand, within OHPLBJKB_00139at 151.385 kb on + strand, within OHPLBJKB_00139at 151.385 kb on + strand, within OHPLBJKB_00139at 151.385 kb on + strand, within OHPLBJKB_00139at 151.386 kb on - strand, within OHPLBJKB_00139at 151.386 kb on - strand, within OHPLBJKB_00139at 151.386 kb on - strand, within OHPLBJKB_00139at 151.425 kb on + strand, within OHPLBJKB_00139at 151.429 kb on + strand, within OHPLBJKB_00139at 151.468 kb on + strand, within OHPLBJKB_00139at 151.469 kb on - strand, within OHPLBJKB_00139at 151.489 kb on + strand, within OHPLBJKB_00139at 151.490 kb on - strand, within OHPLBJKB_00139at 151.495 kb on + strand, within OHPLBJKB_00139at 151.496 kb on - strand, within OHPLBJKB_00139at 151.559 kb on + strand, within OHPLBJKB_00139at 151.559 kb on + strand, within OHPLBJKB_00139at 151.560 kb on - strand, within OHPLBJKB_00139at 151.566 kb on - strand, within OHPLBJKB_00139at 151.566 kb on - strand, within OHPLBJKB_00139at 151.680 kb on + strand, within OHPLBJKB_00139at 151.680 kb on + strand, within OHPLBJKB_00139at 151.681 kb on - strand, within OHPLBJKB_00139at 151.799 kb on + strand, within OHPLBJKB_00139at 151.800 kb on - strand, within OHPLBJKB_00139at 151.800 kb on - strand, within OHPLBJKB_00139at 151.800 kb on - strand, within OHPLBJKB_00139at 151.857 kb on + strand, within OHPLBJKB_00139at 151.857 kb on + strand, within OHPLBJKB_00139at 151.857 kb on + strand, within OHPLBJKB_00139at 151.857 kb on + strand, within OHPLBJKB_00139at 151.857 kb on + strand, within OHPLBJKB_00139at 151.858 kb on - strand, within OHPLBJKB_00139at 151.858 kb on - strand, within OHPLBJKB_00139at 151.858 kb on - strand, within OHPLBJKB_00139at 151.858 kb on - strand, within OHPLBJKB_00139at 151.876 kb on + strand, within OHPLBJKB_00139at 151.876 kb on + strand, within OHPLBJKB_00139at 151.880 kb on + strand, within OHPLBJKB_00139at 151.880 kb on + strand, within OHPLBJKB_00139at 151.880 kb on + strand, within OHPLBJKB_00139at 151.881 kb on - strand, within OHPLBJKB_00139at 151.892 kb on + strand, within OHPLBJKB_00139at 151.892 kb on + strand, within OHPLBJKB_00139at 151.915 kb on + strand, within OHPLBJKB_00139at 151.991 kb on + strand, within OHPLBJKB_00139at 152.063 kb on + strandat 152.063 kb on + strandat 152.064 kb on - strandat 152.064 kb on - strandat 152.064 kb on - strandat 152.077 kb on + strandat 152.077 kb on + strandat 152.078 kb on - strandat 152.078 kb on - strandat 152.078 kb on - strandat 152.139 kb on - strandat 152.226 kb on + strandat 152.226 kb on + strandat 152.230 kb on + strandat 152.230 kb on + strandat 152.230 kb on + strandat 152.230 kb on + strandat 152.230 kb on + strandat 152.230 kb on + strandat 152.230 kb on + strandat 152.230 kb on + strandat 152.230 kb on + strandat 152.230 kb on + strandat 152.230 kb on + strandat 152.230 kb on + strandat 152.230 kb on + strandat 152.230 kb on + strandat 152.230 kb on + strandat 152.230 kb on + strandat 152.230 kb on + strandat 152.230 kb on + strandat 152.230 kb on + strandat 152.230 kb on + strandat 152.230 kb on + strandat 152.231 kb on - strandat 152.231 kb on - strandat 152.231 kb on - strandat 152.231 kb on - strandat 152.231 kb on - strandat 152.231 kb on - strandat 152.231 kb on - strandat 152.231 kb on - strandat 152.231 kb on - strandat 152.231 kb on - strandat 152.231 kb on - strandat 152.231 kb on - strandat 152.231 kb on - strandat 152.231 kb on - strandat 152.231 kb on - strandat 152.231 kb on - strandat 152.231 kb on - strandat 152.231 kb on - strandat 152.231 kb on - strandat 152.262 kb on - strandat 152.269 kb on - strandat 152.471 kb on + strand, within OHPLBJKB_00140at 152.608 kb on - strand, within OHPLBJKB_00140at 152.651 kb on + strand, within OHPLBJKB_00140at 152.672 kb on + strand, within OHPLBJKB_00140at 152.672 kb on + strand, within OHPLBJKB_00140at 152.672 kb on + strand, within OHPLBJKB_00140at 152.672 kb on + strand, within OHPLBJKB_00140at 152.672 kb on + strand, within OHPLBJKB_00140at 152.672 kb on + strand, within OHPLBJKB_00140at 152.672 kb on + strand, within OHPLBJKB_00140at 152.672 kb on + strand, within OHPLBJKB_00140at 152.673 kb on - strand, within OHPLBJKB_00140at 152.673 kb on - strand, within OHPLBJKB_00140at 152.673 kb on - strand, within OHPLBJKB_00140at 152.673 kb on - strand, within OHPLBJKB_00140at 152.673 kb on - strand, within OHPLBJKB_00140at 152.673 kb on - strand, within OHPLBJKB_00140at 152.673 kb on - strand, within OHPLBJKB_00140at 152.675 kb on + strand, within OHPLBJKB_00140at 152.676 kb on - strand, within OHPLBJKB_00140at 152.689 kb on + strand, within OHPLBJKB_00140at 152.728 kb on - strand, within OHPLBJKB_00140at 152.728 kb on - strand, within OHPLBJKB_00140at 152.728 kb on - strand, within OHPLBJKB_00140at 152.807 kb on + strand, within OHPLBJKB_00140at 152.808 kb on - strand, within OHPLBJKB_00140at 152.808 kb on - strand, within OHPLBJKB_00140at 152.833 kb on + strand, within OHPLBJKB_00140at 152.833 kb on + strand, within OHPLBJKB_00140at 152.834 kb on - strand, within OHPLBJKB_00140at 152.834 kb on - strand, within OHPLBJKB_00140at 152.834 kb on - strand, within OHPLBJKB_00140at 152.834 kb on - strand, within OHPLBJKB_00140at 152.834 kb on - strand, within OHPLBJKB_00140at 152.834 kb on - strand, within OHPLBJKB_00140at 152.851 kb on - strand, within OHPLBJKB_00140at 152.864 kb on + strand, within OHPLBJKB_00140at 153.001 kb on + strand, within OHPLBJKB_00140at 153.027 kb on - strand, within OHPLBJKB_00140at 153.047 kb on + strand, within OHPLBJKB_00140at 153.047 kb on + strand, within OHPLBJKB_00140at 153.047 kb on + strand, within OHPLBJKB_00140at 153.047 kb on + strand, within OHPLBJKB_00140at 153.048 kb on - strand, within OHPLBJKB_00140at 153.048 kb on - strand, within OHPLBJKB_00140at 153.048 kb on - strand, within OHPLBJKB_00140at 153.051 kb on + strand, within OHPLBJKB_00140at 153.051 kb on + strand, within OHPLBJKB_00140at 153.051 kb on + strand, within OHPLBJKB_00140at 153.051 kb on + strand, within OHPLBJKB_00140at 153.052 kb on - strand, within OHPLBJKB_00140at 153.052 kb on - strand, within OHPLBJKB_00140at 153.052 kb on - strand, within OHPLBJKB_00140at 153.052 kb on - strand, within OHPLBJKB_00140

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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149,993 + OHPLBJKB_00138 0.52 -0.7
149,994 - OHPLBJKB_00138 0.52 +1.3
150,134 - OHPLBJKB_00138 0.66 -0.6
150,179 + OHPLBJKB_00138 0.71 -1.5
150,199 + OHPLBJKB_00138 0.73 +0.0
150,200 - OHPLBJKB_00138 0.73 -1.1
150,332 + OHPLBJKB_00138 0.86 -1.0
150,447 + +0.9
150,473 - -0.3
150,502 - -0.1
150,504 + -1.0
150,812 + -0.9
150,911 + +0.0
150,974 + OHPLBJKB_00139 0.11 -0.1
151,027 + OHPLBJKB_00139 0.15 +0.2
151,075 + OHPLBJKB_00139 0.18 +0.2
151,076 - OHPLBJKB_00139 0.18 -1.1
151,110 + OHPLBJKB_00139 0.21 -0.4
151,110 + OHPLBJKB_00139 0.21 -0.2
151,110 + OHPLBJKB_00139 0.21 +0.6
151,110 + OHPLBJKB_00139 0.21 +0.4
151,110 + OHPLBJKB_00139 0.21 +0.3
151,111 - OHPLBJKB_00139 0.21 -0.3
151,111 - OHPLBJKB_00139 0.21 -1.1
151,111 - OHPLBJKB_00139 0.21 -0.4
151,111 - OHPLBJKB_00139 0.21 +0.0
151,125 - OHPLBJKB_00139 0.22 -0.1
151,175 + OHPLBJKB_00139 0.26 -0.2
151,176 - OHPLBJKB_00139 0.26 -0.6
151,176 - OHPLBJKB_00139 0.26 -2.8
151,176 - OHPLBJKB_00139 0.26 -0.0
151,267 + OHPLBJKB_00139 0.33 +0.2
151,345 + OHPLBJKB_00139 0.39 -0.5
151,385 + OHPLBJKB_00139 0.42 -0.6
151,385 + OHPLBJKB_00139 0.42 +0.3
151,385 + OHPLBJKB_00139 0.42 +0.6
151,385 + OHPLBJKB_00139 0.42 -0.3
151,385 + OHPLBJKB_00139 0.42 -0.7
151,386 - OHPLBJKB_00139 0.42 -0.3
151,386 - OHPLBJKB_00139 0.42 -0.7
151,386 - OHPLBJKB_00139 0.42 -2.1
151,425 + OHPLBJKB_00139 0.45 -0.7
151,429 + OHPLBJKB_00139 0.45 +0.2
151,468 + OHPLBJKB_00139 0.48 +0.2
151,469 - OHPLBJKB_00139 0.48 -0.8
151,489 + OHPLBJKB_00139 0.50 +0.0
151,490 - OHPLBJKB_00139 0.50 -0.3
151,495 + OHPLBJKB_00139 0.50 -0.1
151,496 - OHPLBJKB_00139 0.50 -0.3
151,559 + OHPLBJKB_00139 0.55 +0.2
151,559 + OHPLBJKB_00139 0.55 -0.2
151,560 - OHPLBJKB_00139 0.55 -1.1
151,566 - OHPLBJKB_00139 0.55 -0.3
151,566 - OHPLBJKB_00139 0.55 +0.1
151,680 + OHPLBJKB_00139 0.64 -0.5
151,680 + OHPLBJKB_00139 0.64 -0.6
151,681 - OHPLBJKB_00139 0.64 +0.4
151,799 + OHPLBJKB_00139 0.73 -0.7
151,800 - OHPLBJKB_00139 0.73 -0.6
151,800 - OHPLBJKB_00139 0.73 -1.5
151,800 - OHPLBJKB_00139 0.73 +0.3
151,857 + OHPLBJKB_00139 0.77 -0.0
151,857 + OHPLBJKB_00139 0.77 -0.3
151,857 + OHPLBJKB_00139 0.77 -0.4
151,857 + OHPLBJKB_00139 0.77 +0.7
151,857 + OHPLBJKB_00139 0.77 -0.3
151,858 - OHPLBJKB_00139 0.77 +0.8
151,858 - OHPLBJKB_00139 0.77 +0.3
151,858 - OHPLBJKB_00139 0.77 +0.4
151,858 - OHPLBJKB_00139 0.77 +0.0
151,876 + OHPLBJKB_00139 0.79 -0.1
151,876 + OHPLBJKB_00139 0.79 +0.1
151,880 + OHPLBJKB_00139 0.79 +0.4
151,880 + OHPLBJKB_00139 0.79 +0.3
151,880 + OHPLBJKB_00139 0.79 -1.2
151,881 - OHPLBJKB_00139 0.79 +0.8
151,892 + OHPLBJKB_00139 0.80 +0.3
151,892 + OHPLBJKB_00139 0.80 -0.1
151,915 + OHPLBJKB_00139 0.82 -1.8
151,991 + OHPLBJKB_00139 0.88 +1.6
152,063 + +0.3
152,063 + +1.4
152,064 - +0.1
152,064 - -0.8
152,064 - -1.1
152,077 + -0.0
152,077 + -2.1
152,078 - -0.4
152,078 - +0.2
152,078 - -1.9
152,139 - +1.4
152,226 + -0.2
152,226 + -0.8
152,230 + +0.1
152,230 + -0.1
152,230 + +1.4
152,230 + +0.3
152,230 + +0.8
152,230 + -1.4
152,230 + +0.0
152,230 + +0.8
152,230 + -0.0
152,230 + +0.3
152,230 + -0.3
152,230 + +0.3
152,230 + -0.1
152,230 + -0.7
152,230 + -0.6
152,230 + -1.0
152,230 + +0.5
152,230 + +0.8
152,230 + -1.7
152,230 + -0.2
152,230 + +0.3
152,231 - -0.2
152,231 - -0.4
152,231 - +0.0
152,231 - -0.1
152,231 - -0.1
152,231 - +0.4
152,231 - -0.4
152,231 - -0.2
152,231 - +0.7
152,231 - +0.2
152,231 - -0.5
152,231 - -0.2
152,231 - +0.4
152,231 - -0.7
152,231 - +0.9
152,231 - +0.3
152,231 - +0.3
152,231 - -1.7
152,231 - -0.7
152,262 - -0.4
152,269 - +1.1
152,471 + OHPLBJKB_00140 0.17 +1.0
152,608 - OHPLBJKB_00140 0.26 +0.0
152,651 + OHPLBJKB_00140 0.29 -0.3
152,672 + OHPLBJKB_00140 0.31 +0.2
152,672 + OHPLBJKB_00140 0.31 -0.5
152,672 + OHPLBJKB_00140 0.31 +0.6
152,672 + OHPLBJKB_00140 0.31 -0.9
152,672 + OHPLBJKB_00140 0.31 +1.1
152,672 + OHPLBJKB_00140 0.31 -0.5
152,672 + OHPLBJKB_00140 0.31 -0.0
152,672 + OHPLBJKB_00140 0.31 +0.9
152,673 - OHPLBJKB_00140 0.31 +0.1
152,673 - OHPLBJKB_00140 0.31 +0.4
152,673 - OHPLBJKB_00140 0.31 +0.6
152,673 - OHPLBJKB_00140 0.31 -0.6
152,673 - OHPLBJKB_00140 0.31 +0.0
152,673 - OHPLBJKB_00140 0.31 +0.3
152,673 - OHPLBJKB_00140 0.31 +0.6
152,675 + OHPLBJKB_00140 0.31 +0.3
152,676 - OHPLBJKB_00140 0.31 -0.8
152,689 + OHPLBJKB_00140 0.32 -0.2
152,728 - OHPLBJKB_00140 0.34 -0.1
152,728 - OHPLBJKB_00140 0.34 -0.0
152,728 - OHPLBJKB_00140 0.34 +0.2
152,807 + OHPLBJKB_00140 0.40 -0.8
152,808 - OHPLBJKB_00140 0.40 -0.5
152,808 - OHPLBJKB_00140 0.40 -1.5
152,833 + OHPLBJKB_00140 0.42 +0.0
152,833 + OHPLBJKB_00140 0.42 -0.2
152,834 - OHPLBJKB_00140 0.42 -0.1
152,834 - OHPLBJKB_00140 0.42 +0.5
152,834 - OHPLBJKB_00140 0.42 +0.1
152,834 - OHPLBJKB_00140 0.42 -0.7
152,834 - OHPLBJKB_00140 0.42 +1.1
152,834 - OHPLBJKB_00140 0.42 -0.3
152,851 - OHPLBJKB_00140 0.43 -0.2
152,864 + OHPLBJKB_00140 0.44 -0.0
153,001 + OHPLBJKB_00140 0.53 +0.2
153,027 - OHPLBJKB_00140 0.55 -0.4
153,047 + OHPLBJKB_00140 0.56 -0.1
153,047 + OHPLBJKB_00140 0.56 -1.8
153,047 + OHPLBJKB_00140 0.56 -0.1
153,047 + OHPLBJKB_00140 0.56 +1.1
153,048 - OHPLBJKB_00140 0.56 +0.2
153,048 - OHPLBJKB_00140 0.56 +0.7
153,048 - OHPLBJKB_00140 0.56 +0.1
153,051 + OHPLBJKB_00140 0.57 -2.3
153,051 + OHPLBJKB_00140 0.57 +0.3
153,051 + OHPLBJKB_00140 0.57 +0.6
153,051 + OHPLBJKB_00140 0.57 -0.1
153,052 - OHPLBJKB_00140 0.57 -0.7
153,052 - OHPLBJKB_00140 0.57 +0.1
153,052 - OHPLBJKB_00140 0.57 -0.6
153,052 - OHPLBJKB_00140 0.57 +0.2

Or see this region's nucleotide sequence