Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06828

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06827 and MPMX19_06828 are separated by 31 nucleotidesMPMX19_06828 and MPMX19_06829 overlap by 13 nucleotidesMPMX19_06829 and MPMX19_06830 overlap by 4 nucleotides MPMX19_06827: MPMX19_06827 - Ectoine hydrolase, at 92,618 to 93,817 _06827 MPMX19_06828: MPMX19_06828 - Delta(1)-pyrroline-2-carboxylate reductase, at 93,849 to 94,853 _06828 MPMX19_06829: MPMX19_06829 - hypothetical protein, at 94,841 to 95,827 _06829 MPMX19_06830: MPMX19_06830 - Maleate isomerase, at 95,824 to 96,609 _06830 Position (kb) 93 94 95Strain fitness (log2 ratio) -2 -1 0 1at 92.865 kb on + strand, within MPMX19_06827at 93.030 kb on + strand, within MPMX19_06827at 93.030 kb on + strand, within MPMX19_06827at 93.030 kb on + strand, within MPMX19_06827at 93.031 kb on - strand, within MPMX19_06827at 93.031 kb on - strand, within MPMX19_06827at 93.040 kb on - strand, within MPMX19_06827at 93.040 kb on - strand, within MPMX19_06827at 93.040 kb on - strand, within MPMX19_06827at 93.157 kb on - strand, within MPMX19_06827at 93.216 kb on + strand, within MPMX19_06827at 93.217 kb on - strand, within MPMX19_06827at 93.217 kb on - strand, within MPMX19_06827at 93.217 kb on - strand, within MPMX19_06827at 93.217 kb on - strand, within MPMX19_06827at 93.217 kb on - strand, within MPMX19_06827at 93.315 kb on + strand, within MPMX19_06827at 93.315 kb on + strand, within MPMX19_06827at 93.315 kb on + strand, within MPMX19_06827at 93.315 kb on + strand, within MPMX19_06827at 93.315 kb on + strand, within MPMX19_06827at 93.315 kb on + strand, within MPMX19_06827at 93.316 kb on - strand, within MPMX19_06827at 93.316 kb on - strand, within MPMX19_06827at 93.316 kb on - strand, within MPMX19_06827at 93.316 kb on - strand, within MPMX19_06827at 93.316 kb on - strand, within MPMX19_06827at 93.414 kb on + strand, within MPMX19_06827at 93.415 kb on - strand, within MPMX19_06827at 93.415 kb on - strand, within MPMX19_06827at 93.435 kb on + strand, within MPMX19_06827at 93.435 kb on + strand, within MPMX19_06827at 93.435 kb on + strand, within MPMX19_06827at 93.435 kb on + strand, within MPMX19_06827at 93.436 kb on - strand, within MPMX19_06827at 93.436 kb on - strand, within MPMX19_06827at 93.436 kb on - strand, within MPMX19_06827at 93.436 kb on - strand, within MPMX19_06827at 93.534 kb on + strand, within MPMX19_06827at 93.534 kb on + strand, within MPMX19_06827at 93.534 kb on + strand, within MPMX19_06827at 93.534 kb on + strand, within MPMX19_06827at 93.534 kb on + strand, within MPMX19_06827at 93.535 kb on - strand, within MPMX19_06827at 93.535 kb on - strand, within MPMX19_06827at 93.535 kb on - strand, within MPMX19_06827at 93.535 kb on - strand, within MPMX19_06827at 93.535 kb on - strand, within MPMX19_06827at 93.573 kb on + strand, within MPMX19_06827at 93.616 kb on - strand, within MPMX19_06827at 93.663 kb on + strand, within MPMX19_06827at 93.663 kb on + strand, within MPMX19_06827at 93.663 kb on + strand, within MPMX19_06827at 93.663 kb on + strand, within MPMX19_06827at 93.664 kb on - strand, within MPMX19_06827at 93.664 kb on - strand, within MPMX19_06827at 93.664 kb on - strand, within MPMX19_06827at 93.664 kb on - strand, within MPMX19_06827at 93.682 kb on - strand, within MPMX19_06827at 93.780 kb on + strandat 93.781 kb on - strandat 93.834 kb on + strandat 93.834 kb on + strandat 93.834 kb on + strandat 93.835 kb on - strandat 94.102 kb on + strand, within MPMX19_06828at 94.102 kb on + strand, within MPMX19_06828at 94.102 kb on + strand, within MPMX19_06828at 94.102 kb on + strand, within MPMX19_06828at 94.102 kb on + strand, within MPMX19_06828at 94.102 kb on + strand, within MPMX19_06828at 94.103 kb on - strand, within MPMX19_06828at 94.103 kb on - strand, within MPMX19_06828at 94.103 kb on - strand, within MPMX19_06828at 94.103 kb on - strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.692 kb on - strand, within MPMX19_06828

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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92,865 + MPMX19_06827 0.21 +0.1
93,030 + MPMX19_06827 0.34 -0.3
93,030 + MPMX19_06827 0.34 +0.3
93,030 + MPMX19_06827 0.34 -1.0
93,031 - MPMX19_06827 0.34 -0.8
93,031 - MPMX19_06827 0.34 +0.5
93,040 - MPMX19_06827 0.35 -0.2
93,040 - MPMX19_06827 0.35 -1.3
93,040 - MPMX19_06827 0.35 +0.3
93,157 - MPMX19_06827 0.45 +0.5
93,216 + MPMX19_06827 0.50 +0.1
93,217 - MPMX19_06827 0.50 -0.9
93,217 - MPMX19_06827 0.50 +0.3
93,217 - MPMX19_06827 0.50 -0.0
93,217 - MPMX19_06827 0.50 -1.0
93,217 - MPMX19_06827 0.50 -1.8
93,315 + MPMX19_06827 0.58 -0.1
93,315 + MPMX19_06827 0.58 +1.5
93,315 + MPMX19_06827 0.58 -0.4
93,315 + MPMX19_06827 0.58 -0.8
93,315 + MPMX19_06827 0.58 +0.0
93,315 + MPMX19_06827 0.58 -0.9
93,316 - MPMX19_06827 0.58 -0.1
93,316 - MPMX19_06827 0.58 -0.6
93,316 - MPMX19_06827 0.58 +0.5
93,316 - MPMX19_06827 0.58 -1.2
93,316 - MPMX19_06827 0.58 -0.1
93,414 + MPMX19_06827 0.66 +0.2
93,415 - MPMX19_06827 0.66 +0.5
93,415 - MPMX19_06827 0.66 +1.0
93,435 + MPMX19_06827 0.68 -0.6
93,435 + MPMX19_06827 0.68 -0.9
93,435 + MPMX19_06827 0.68 -1.1
93,435 + MPMX19_06827 0.68 -1.5
93,436 - MPMX19_06827 0.68 -0.3
93,436 - MPMX19_06827 0.68 -1.0
93,436 - MPMX19_06827 0.68 -0.2
93,436 - MPMX19_06827 0.68 -2.0
93,534 + MPMX19_06827 0.76 +1.1
93,534 + MPMX19_06827 0.76 +0.4
93,534 + MPMX19_06827 0.76 -0.6
93,534 + MPMX19_06827 0.76 -1.3
93,534 + MPMX19_06827 0.76 +1.5
93,535 - MPMX19_06827 0.76 -0.3
93,535 - MPMX19_06827 0.76 -0.8
93,535 - MPMX19_06827 0.76 -0.5
93,535 - MPMX19_06827 0.76 +0.5
93,535 - MPMX19_06827 0.76 -0.3
93,573 + MPMX19_06827 0.80 -2.3
93,616 - MPMX19_06827 0.83 -0.2
93,663 + MPMX19_06827 0.87 -0.8
93,663 + MPMX19_06827 0.87 -0.2
93,663 + MPMX19_06827 0.87 -0.2
93,663 + MPMX19_06827 0.87 -0.6
93,664 - MPMX19_06827 0.87 -0.8
93,664 - MPMX19_06827 0.87 -0.1
93,664 - MPMX19_06827 0.87 +0.7
93,664 - MPMX19_06827 0.87 +0.5
93,682 - MPMX19_06827 0.89 -0.4
93,780 + -1.3
93,781 - -0.9
93,834 + -0.2
93,834 + -1.3
93,834 + +0.3
93,835 - -0.5
94,102 + MPMX19_06828 0.25 -2.0
94,102 + MPMX19_06828 0.25 +0.1
94,102 + MPMX19_06828 0.25 +1.3
94,102 + MPMX19_06828 0.25 +0.1
94,102 + MPMX19_06828 0.25 -0.8
94,102 + MPMX19_06828 0.25 -0.2
94,103 - MPMX19_06828 0.25 -1.2
94,103 - MPMX19_06828 0.25 +1.3
94,103 - MPMX19_06828 0.25 -0.3
94,103 - MPMX19_06828 0.25 +0.4
94,660 + MPMX19_06828 0.81 -0.7
94,660 + MPMX19_06828 0.81 -0.2
94,660 + MPMX19_06828 0.81 -0.8
94,660 + MPMX19_06828 0.81 -0.4
94,660 + MPMX19_06828 0.81 -0.3
94,660 + MPMX19_06828 0.81 -0.3
94,660 + MPMX19_06828 0.81 -0.0
94,660 + MPMX19_06828 0.81 +0.6
94,661 - MPMX19_06828 0.81 -0.3
94,661 - MPMX19_06828 0.81 +0.2
94,661 - MPMX19_06828 0.81 -0.4
94,661 - MPMX19_06828 0.81 +0.2
94,661 - MPMX19_06828 0.81 +0.5
94,661 - MPMX19_06828 0.81 +0.5
94,661 - MPMX19_06828 0.81 +0.0
94,661 - MPMX19_06828 0.81 -1.4
94,661 - MPMX19_06828 0.81 +0.8
94,661 - MPMX19_06828 0.81 -1.5
94,661 - MPMX19_06828 0.81 +0.3
94,661 - MPMX19_06828 0.81 +0.7
94,661 - MPMX19_06828 0.81 -0.3
94,661 - MPMX19_06828 0.81 -0.9
94,692 - MPMX19_06828 0.84 +1.2

Or see this region's nucleotide sequence