Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06761

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06760 and MPMX19_06761 are separated by 353 nucleotidesMPMX19_06761 and MPMX19_06762 are separated by 120 nucleotidesMPMX19_06762 and MPMX19_06763 are separated by 88 nucleotides MPMX19_06760: MPMX19_06760 - Taurine-binding periplasmic protein, at 25,760 to 26,767 _06760 MPMX19_06761: MPMX19_06761 - HTH-type transcriptional regulator TauR, at 27,121 to 28,596 _06761 MPMX19_06762: MPMX19_06762 - Peptide deformylase, at 28,717 to 29,253 _06762 MPMX19_06763: MPMX19_06763 - hypothetical protein, at 29,342 to 30,259 _06763 Position (kb) 27 28 29Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 26.325 kb on + strand, within MPMX19_06760at 26.325 kb on + strand, within MPMX19_06760at 26.325 kb on + strand, within MPMX19_06760at 26.325 kb on + strand, within MPMX19_06760at 26.325 kb on + strand, within MPMX19_06760at 26.326 kb on - strand, within MPMX19_06760at 26.326 kb on - strand, within MPMX19_06760at 26.326 kb on - strand, within MPMX19_06760at 26.326 kb on - strand, within MPMX19_06760at 26.326 kb on - strand, within MPMX19_06760at 26.326 kb on - strand, within MPMX19_06760at 26.326 kb on - strand, within MPMX19_06760at 26.337 kb on + strand, within MPMX19_06760at 26.337 kb on + strand, within MPMX19_06760at 26.338 kb on - strand, within MPMX19_06760at 26.338 kb on - strand, within MPMX19_06760at 26.595 kb on + strand, within MPMX19_06760at 26.595 kb on + strand, within MPMX19_06760at 26.596 kb on - strand, within MPMX19_06760at 26.596 kb on - strand, within MPMX19_06760at 26.596 kb on - strand, within MPMX19_06760at 26.653 kb on + strand, within MPMX19_06760at 26.654 kb on - strand, within MPMX19_06760at 26.654 kb on - strand, within MPMX19_06760at 26.661 kb on + strand, within MPMX19_06760at 26.843 kb on + strandat 26.843 kb on + strandat 26.844 kb on - strandat 27.511 kb on + strand, within MPMX19_06761at 27.511 kb on + strand, within MPMX19_06761at 27.512 kb on - strand, within MPMX19_06761at 27.512 kb on - strand, within MPMX19_06761at 27.518 kb on - strand, within MPMX19_06761at 27.518 kb on - strand, within MPMX19_06761at 27.851 kb on + strand, within MPMX19_06761at 27.851 kb on + strand, within MPMX19_06761at 27.851 kb on + strand, within MPMX19_06761at 27.851 kb on + strand, within MPMX19_06761at 27.851 kb on + strand, within MPMX19_06761at 27.852 kb on - strand, within MPMX19_06761at 27.852 kb on - strand, within MPMX19_06761at 27.852 kb on - strand, within MPMX19_06761at 27.852 kb on - strand, within MPMX19_06761at 27.852 kb on - strand, within MPMX19_06761at 27.852 kb on - strand, within MPMX19_06761at 27.852 kb on - strand, within MPMX19_06761at 27.852 kb on - strand, within MPMX19_06761at 27.884 kb on + strand, within MPMX19_06761at 27.885 kb on - strand, within MPMX19_06761at 28.030 kb on + strand, within MPMX19_06761at 28.108 kb on + strand, within MPMX19_06761at 28.108 kb on + strand, within MPMX19_06761at 28.108 kb on + strand, within MPMX19_06761at 28.109 kb on - strand, within MPMX19_06761at 28.109 kb on - strand, within MPMX19_06761at 28.480 kb on - strandat 28.513 kb on + strandat 28.566 kb on - strandat 28.566 kb on - strandat 28.649 kb on + strandat 28.649 kb on + strandat 28.650 kb on - strandat 28.650 kb on - strandat 28.650 kb on - strandat 28.650 kb on - strandat 28.650 kb on - strandat 28.805 kb on + strand, within MPMX19_06762at 28.908 kb on - strand, within MPMX19_06762at 28.908 kb on - strand, within MPMX19_06762at 28.908 kb on - strand, within MPMX19_06762at 29.415 kb on + strandat 29.415 kb on + strandat 29.415 kb on + strandat 29.415 kb on + strandat 29.415 kb on + strandat 29.415 kb on + strandat 29.415 kb on + strandat 29.416 kb on - strandat 29.416 kb on - strandat 29.416 kb on - strandat 29.416 kb on - strandat 29.535 kb on + strand, within MPMX19_06763at 29.535 kb on + strand, within MPMX19_06763at 29.572 kb on - strand, within MPMX19_06763

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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26,325 + MPMX19_06760 0.56 -0.7
26,325 + MPMX19_06760 0.56 -1.3
26,325 + MPMX19_06760 0.56 +0.1
26,325 + MPMX19_06760 0.56 +0.2
26,325 + MPMX19_06760 0.56 -0.9
26,326 - MPMX19_06760 0.56 -0.9
26,326 - MPMX19_06760 0.56 +0.5
26,326 - MPMX19_06760 0.56 +0.2
26,326 - MPMX19_06760 0.56 -1.6
26,326 - MPMX19_06760 0.56 -0.5
26,326 - MPMX19_06760 0.56 -1.0
26,326 - MPMX19_06760 0.56 -0.0
26,337 + MPMX19_06760 0.57 -2.4
26,337 + MPMX19_06760 0.57 -2.4
26,338 - MPMX19_06760 0.57 +0.3
26,338 - MPMX19_06760 0.57 +0.2
26,595 + MPMX19_06760 0.83 +0.5
26,595 + MPMX19_06760 0.83 -0.7
26,596 - MPMX19_06760 0.83 -0.8
26,596 - MPMX19_06760 0.83 +1.0
26,596 - MPMX19_06760 0.83 -1.0
26,653 + MPMX19_06760 0.89 -0.3
26,654 - MPMX19_06760 0.89 +1.5
26,654 - MPMX19_06760 0.89 +0.5
26,661 + MPMX19_06760 0.89 +0.1
26,843 + +0.2
26,843 + -0.8
26,844 - -0.4
27,511 + MPMX19_06761 0.26 -0.3
27,511 + MPMX19_06761 0.26 +0.7
27,512 - MPMX19_06761 0.26 +0.2
27,512 - MPMX19_06761 0.26 -0.0
27,518 - MPMX19_06761 0.27 -0.9
27,518 - MPMX19_06761 0.27 -0.8
27,851 + MPMX19_06761 0.49 -0.6
27,851 + MPMX19_06761 0.49 -0.9
27,851 + MPMX19_06761 0.49 -1.2
27,851 + MPMX19_06761 0.49 -0.8
27,851 + MPMX19_06761 0.49 +0.3
27,852 - MPMX19_06761 0.50 -0.7
27,852 - MPMX19_06761 0.50 +0.2
27,852 - MPMX19_06761 0.50 -0.3
27,852 - MPMX19_06761 0.50 +0.1
27,852 - MPMX19_06761 0.50 -0.8
27,852 - MPMX19_06761 0.50 +0.3
27,852 - MPMX19_06761 0.50 -0.4
27,852 - MPMX19_06761 0.50 -1.6
27,884 + MPMX19_06761 0.52 -1.1
27,885 - MPMX19_06761 0.52 +0.3
28,030 + MPMX19_06761 0.62 -0.0
28,108 + MPMX19_06761 0.67 -2.5
28,108 + MPMX19_06761 0.67 -1.6
28,108 + MPMX19_06761 0.67 -0.0
28,109 - MPMX19_06761 0.67 -1.3
28,109 - MPMX19_06761 0.67 -0.7
28,480 - -2.2
28,513 + -0.5
28,566 - -0.0
28,566 - -0.5
28,649 + +1.0
28,649 + +0.7
28,650 - -0.6
28,650 - +0.4
28,650 - +0.1
28,650 - -0.8
28,650 - -0.2
28,805 + MPMX19_06762 0.16 +0.7
28,908 - MPMX19_06762 0.36 -0.5
28,908 - MPMX19_06762 0.36 -0.7
28,908 - MPMX19_06762 0.36 -2.8
29,415 + -1.2
29,415 + -0.7
29,415 + +0.9
29,415 + -1.2
29,415 + -1.6
29,415 + -0.7
29,415 + -1.0
29,416 - +0.5
29,416 - -1.3
29,416 - +1.9
29,416 - -1.0
29,535 + MPMX19_06763 0.21 +0.2
29,535 + MPMX19_06763 0.21 +0.8
29,572 - MPMX19_06763 0.25 -0.3

Or see this region's nucleotide sequence