Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06534 and MPMX19_06535 are separated by 8 nucleotides MPMX19_06535 and MPMX19_06536 are separated by 135 nucleotides
MPMX19_06534: MPMX19_06534 - Putative amino-acid ABC transporter-binding protein YhdW, at 321,608 to 322,678
_06534
MPMX19_06535: MPMX19_06535 - hypothetical protein, at 322,687 to 323,856
_06535
MPMX19_06536: MPMX19_06536 - Inner membrane amino-acid ABC transporter permease protein YhdY, at 323,992 to 324,927
_06536
Position (kb) 322
323
324 Strain fitness (log2 ratio) -2
-1
0
1 at 322.050 kb on + strand, within MPMX19_06534 at 322.298 kb on + strand, within MPMX19_06534 at 322.298 kb on + strand, within MPMX19_06534 at 322.298 kb on + strand, within MPMX19_06534 at 322.538 kb on + strand, within MPMX19_06534 at 322.538 kb on + strand, within MPMX19_06534 at 322.566 kb on - strand, within MPMX19_06534 at 322.566 kb on - strand, within MPMX19_06534 at 322.658 kb on + strand at 322.658 kb on + strand at 323.057 kb on + strand, within MPMX19_06535 at 323.058 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535 at 323.066 kb on - strand, within MPMX19_06535 at 323.822 kb on - strand at 323.822 kb on - strand at 323.822 kb on - strand at 323.822 kb on - strand at 323.945 kb on + strand at 323.946 kb on - strand at 324.103 kb on + strand, within MPMX19_06536 at 324.103 kb on + strand, within MPMX19_06536 at 324.103 kb on + strand, within MPMX19_06536 at 324.103 kb on + strand, within MPMX19_06536 at 324.103 kb on + strand, within MPMX19_06536 at 324.103 kb on + strand, within MPMX19_06536 at 324.103 kb on + strand, within MPMX19_06536 at 324.103 kb on + strand, within MPMX19_06536 at 324.103 kb on + strand, within MPMX19_06536 at 324.121 kb on + strand, within MPMX19_06536 at 324.121 kb on + strand, within MPMX19_06536 at 324.572 kb on - strand, within MPMX19_06536 at 324.622 kb on + strand, within MPMX19_06536 at 324.622 kb on + strand, within MPMX19_06536 at 324.622 kb on + strand, within MPMX19_06536 at 324.622 kb on + strand, within MPMX19_06536 at 324.829 kb on + strand, within MPMX19_06536 at 324.829 kb on + strand, within MPMX19_06536 at 324.829 kb on + strand, within MPMX19_06536 at 324.829 kb on + strand, within MPMX19_06536 at 324.829 kb on + strand, within MPMX19_06536 at 324.829 kb on + strand, within MPMX19_06536 at 324.830 kb on - strand, within MPMX19_06536 at 324.830 kb on - strand, within MPMX19_06536 at 324.830 kb on - strand, within MPMX19_06536 at 324.830 kb on - strand, within MPMX19_06536 at 324.830 kb on - strand, within MPMX19_06536 at 324.830 kb on - strand, within MPMX19_06536 at 324.830 kb on - strand, within MPMX19_06536 at 324.830 kb on - strand, within MPMX19_06536
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 322,050 + MPMX19_06534 0.41 -0.4 322,298 + MPMX19_06534 0.64 -0.6 322,298 + MPMX19_06534 0.64 -1.2 322,298 + MPMX19_06534 0.64 -0.6 322,538 + MPMX19_06534 0.87 -0.3 322,538 + MPMX19_06534 0.87 +0.2 322,566 - MPMX19_06534 0.89 -0.8 322,566 - MPMX19_06534 0.89 -2.1 322,658 + +0.0 322,658 + -0.1 323,057 + MPMX19_06535 0.32 -0.1 323,058 - MPMX19_06535 0.32 +0.3 323,066 - MPMX19_06535 0.32 +0.1 323,066 - MPMX19_06535 0.32 -0.8 323,066 - MPMX19_06535 0.32 +0.3 323,066 - MPMX19_06535 0.32 +1.4 323,066 - MPMX19_06535 0.32 -0.2 323,066 - MPMX19_06535 0.32 -1.7 323,066 - MPMX19_06535 0.32 -0.3 323,822 - -2.0 323,822 - -0.9 323,822 - -0.6 323,822 - +0.6 323,945 + -0.3 323,946 - -0.3 324,103 + MPMX19_06536 0.12 -2.4 324,103 + MPMX19_06536 0.12 +0.1 324,103 + MPMX19_06536 0.12 -2.1 324,103 + MPMX19_06536 0.12 -0.0 324,103 + MPMX19_06536 0.12 -1.8 324,103 + MPMX19_06536 0.12 -0.7 324,103 + MPMX19_06536 0.12 -1.3 324,103 + MPMX19_06536 0.12 -0.5 324,103 + MPMX19_06536 0.12 +0.3 324,121 + MPMX19_06536 0.14 +0.6 324,121 + MPMX19_06536 0.14 +0.6 324,572 - MPMX19_06536 0.62 -0.5 324,622 + MPMX19_06536 0.67 -0.1 324,622 + MPMX19_06536 0.67 -0.4 324,622 + MPMX19_06536 0.67 +1.6 324,622 + MPMX19_06536 0.67 -0.8 324,829 + MPMX19_06536 0.89 -0.3 324,829 + MPMX19_06536 0.89 -0.2 324,829 + MPMX19_06536 0.89 -1.5 324,829 + MPMX19_06536 0.89 +0.4 324,829 + MPMX19_06536 0.89 -0.9 324,829 + MPMX19_06536 0.89 -0.1 324,830 - MPMX19_06536 0.90 +0.7 324,830 - MPMX19_06536 0.90 +0.1 324,830 - MPMX19_06536 0.90 -0.5 324,830 - MPMX19_06536 0.90 -0.1 324,830 - MPMX19_06536 0.90 +0.8 324,830 - MPMX19_06536 0.90 +1.2 324,830 - MPMX19_06536 0.90 +0.6 324,830 - MPMX19_06536 0.90 +0.2
Or see this region's nucleotide sequence