Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06084

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06082 and MPMX19_06083 are separated by 11 nucleotidesMPMX19_06083 and MPMX19_06084 are separated by 73 nucleotidesMPMX19_06084 and MPMX19_06085 are separated by 131 nucleotides MPMX19_06082: MPMX19_06082 - Molybdenum storage protein subunit beta, at 257,930 to 258,769 _06082 MPMX19_06083: MPMX19_06083 - Molybdenum storage protein subunit alpha, at 258,781 to 259,614 _06083 MPMX19_06084: MPMX19_06084 - Transcriptional regulatory protein LnrK, at 259,688 to 260,338 _06084 MPMX19_06085: MPMX19_06085 - hypothetical protein, at 260,470 to 261,483 _06085 Position (kb) 259 260 261Strain fitness (log2 ratio) -3 -2 -1 0 1at 259.045 kb on + strand, within MPMX19_06083at 259.045 kb on + strand, within MPMX19_06083at 259.045 kb on + strand, within MPMX19_06083at 259.045 kb on + strand, within MPMX19_06083at 259.046 kb on - strand, within MPMX19_06083at 259.046 kb on - strand, within MPMX19_06083at 259.125 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.246 kb on + strand, within MPMX19_06083at 259.246 kb on + strand, within MPMX19_06083at 259.247 kb on - strand, within MPMX19_06083at 259.247 kb on - strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.660 kb on + strandat 259.689 kb on + strandat 259.689 kb on + strandat 259.689 kb on + strandat 259.689 kb on + strandat 259.690 kb on - strandat 259.690 kb on - strandat 259.690 kb on - strandat 259.690 kb on - strandat 259.710 kb on - strandat 259.830 kb on + strand, within MPMX19_06084at 259.830 kb on + strand, within MPMX19_06084at 259.830 kb on + strand, within MPMX19_06084at 259.830 kb on + strand, within MPMX19_06084at 259.830 kb on + strand, within MPMX19_06084at 259.831 kb on - strand, within MPMX19_06084at 259.831 kb on - strand, within MPMX19_06084at 260.046 kb on + strand, within MPMX19_06084at 260.372 kb on + strandat 260.400 kb on + strandat 260.401 kb on - strandat 261.098 kb on + strand, within MPMX19_06085

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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259,045 + MPMX19_06083 0.32 -3.1
259,045 + MPMX19_06083 0.32 -0.8
259,045 + MPMX19_06083 0.32 +0.0
259,045 + MPMX19_06083 0.32 +0.6
259,046 - MPMX19_06083 0.32 -0.8
259,046 - MPMX19_06083 0.32 -0.1
259,125 + MPMX19_06083 0.41 -2.1
259,162 + MPMX19_06083 0.46 -0.5
259,162 + MPMX19_06083 0.46 -0.7
259,162 + MPMX19_06083 0.46 -0.1
259,162 + MPMX19_06083 0.46 -0.4
259,162 + MPMX19_06083 0.46 -1.4
259,162 + MPMX19_06083 0.46 -1.5
259,162 + MPMX19_06083 0.46 +0.2
259,162 + MPMX19_06083 0.46 +1.0
259,162 + MPMX19_06083 0.46 -0.2
259,162 + MPMX19_06083 0.46 +1.0
259,162 + MPMX19_06083 0.46 +0.2
259,162 + MPMX19_06083 0.46 +0.0
259,162 + MPMX19_06083 0.46 -0.4
259,162 + MPMX19_06083 0.46 -0.7
259,162 + MPMX19_06083 0.46 +0.5
259,162 + MPMX19_06083 0.46 -2.4
259,162 + MPMX19_06083 0.46 -0.6
259,163 - MPMX19_06083 0.46 -0.5
259,163 - MPMX19_06083 0.46 -0.8
259,163 - MPMX19_06083 0.46 +0.0
259,163 - MPMX19_06083 0.46 -1.4
259,163 - MPMX19_06083 0.46 +0.3
259,163 - MPMX19_06083 0.46 -0.6
259,163 - MPMX19_06083 0.46 +0.4
259,163 - MPMX19_06083 0.46 -1.5
259,163 - MPMX19_06083 0.46 -1.3
259,163 - MPMX19_06083 0.46 +0.8
259,163 - MPMX19_06083 0.46 +0.5
259,163 - MPMX19_06083 0.46 +1.6
259,163 - MPMX19_06083 0.46 -0.7
259,163 - MPMX19_06083 0.46 -0.8
259,163 - MPMX19_06083 0.46 -0.4
259,163 - MPMX19_06083 0.46 -0.1
259,163 - MPMX19_06083 0.46 +0.2
259,163 - MPMX19_06083 0.46 +0.9
259,246 + MPMX19_06083 0.56 +0.0
259,246 + MPMX19_06083 0.56 +0.0
259,247 - MPMX19_06083 0.56 +0.6
259,247 - MPMX19_06083 0.56 -0.4
259,369 + MPMX19_06083 0.71 -1.2
259,369 + MPMX19_06083 0.71 -0.2
259,369 + MPMX19_06083 0.71 -0.5
259,369 + MPMX19_06083 0.71 +0.6
259,369 + MPMX19_06083 0.71 -2.0
259,369 + MPMX19_06083 0.71 -2.4
259,369 + MPMX19_06083 0.71 -0.4
259,369 + MPMX19_06083 0.71 +0.0
259,369 + MPMX19_06083 0.71 -0.2
259,369 + MPMX19_06083 0.71 +0.0
259,369 + MPMX19_06083 0.71 -0.4
259,369 + MPMX19_06083 0.71 -1.0
259,369 + MPMX19_06083 0.71 +0.5
259,369 + MPMX19_06083 0.71 -2.0
259,370 - MPMX19_06083 0.71 -2.0
259,370 - MPMX19_06083 0.71 -2.2
259,370 - MPMX19_06083 0.71 +0.1
259,370 - MPMX19_06083 0.71 +0.4
259,370 - MPMX19_06083 0.71 +0.5
259,370 - MPMX19_06083 0.71 +0.1
259,370 - MPMX19_06083 0.71 -0.4
259,370 - MPMX19_06083 0.71 -0.7
259,370 - MPMX19_06083 0.71 -0.5
259,660 + -2.4
259,689 + -2.0
259,689 + -1.4
259,689 + -2.0
259,689 + -0.4
259,690 - +0.0
259,690 - +0.4
259,690 - +0.8
259,690 - -1.4
259,710 - +0.5
259,830 + MPMX19_06084 0.22 -0.2
259,830 + MPMX19_06084 0.22 +0.7
259,830 + MPMX19_06084 0.22 -0.0
259,830 + MPMX19_06084 0.22 -1.0
259,830 + MPMX19_06084 0.22 -0.1
259,831 - MPMX19_06084 0.22 +0.8
259,831 - MPMX19_06084 0.22 +0.1
260,046 + MPMX19_06084 0.55 -1.1
260,372 + -1.4
260,400 + -1.2
260,401 - -0.4
261,098 + MPMX19_06085 0.62 +0.0

Or see this region's nucleotide sequence