Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05025 and MPMX19_05026 are separated by 56 nucleotides MPMX19_05026 and MPMX19_05027 are separated by 105 nucleotides
MPMX19_05025: MPMX19_05025 - Cytochrome bd-I ubiquinol oxidase subunit 2, at 510,739 to 511,758
_05025
MPMX19_05026: MPMX19_05026 - hypothetical protein, at 511,815 to 512,516
_05026
MPMX19_05027: MPMX19_05027 - hypothetical protein, at 512,622 to 513,341
_05027
Position (kb)
511
512
513 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 510.853 kb on + strand, within MPMX19_05025 at 510.853 kb on + strand, within MPMX19_05025 at 510.854 kb on - strand, within MPMX19_05025 at 510.854 kb on - strand, within MPMX19_05025 at 510.979 kb on + strand, within MPMX19_05025 at 510.980 kb on - strand, within MPMX19_05025 at 510.980 kb on - strand, within MPMX19_05025 at 510.980 kb on - strand, within MPMX19_05025 at 510.980 kb on - strand, within MPMX19_05025 at 510.980 kb on - strand, within MPMX19_05025 at 511.003 kb on + strand, within MPMX19_05025 at 511.003 kb on + strand, within MPMX19_05025 at 511.003 kb on + strand, within MPMX19_05025 at 511.003 kb on + strand, within MPMX19_05025 at 511.004 kb on - strand, within MPMX19_05025 at 511.004 kb on - strand, within MPMX19_05025 at 511.004 kb on - strand, within MPMX19_05025 at 511.004 kb on - strand, within MPMX19_05025 at 511.004 kb on - strand, within MPMX19_05025 at 511.004 kb on - strand, within MPMX19_05025 at 511.004 kb on - strand, within MPMX19_05025 at 511.004 kb on - strand, within MPMX19_05025 at 511.004 kb on - strand, within MPMX19_05025 at 511.004 kb on - strand, within MPMX19_05025 at 511.004 kb on - strand, within MPMX19_05025 at 511.004 kb on - strand, within MPMX19_05025 at 511.180 kb on + strand, within MPMX19_05025 at 511.180 kb on + strand, within MPMX19_05025 at 511.180 kb on + strand, within MPMX19_05025 at 511.180 kb on + strand, within MPMX19_05025 at 511.180 kb on + strand, within MPMX19_05025 at 511.181 kb on - strand, within MPMX19_05025 at 511.181 kb on - strand, within MPMX19_05025 at 511.261 kb on + strand, within MPMX19_05025 at 511.262 kb on - strand, within MPMX19_05025 at 511.262 kb on - strand, within MPMX19_05025 at 511.561 kb on + strand, within MPMX19_05025 at 511.561 kb on + strand, within MPMX19_05025 at 511.561 kb on + strand, within MPMX19_05025 at 511.561 kb on + strand, within MPMX19_05025 at 511.562 kb on - strand, within MPMX19_05025 at 511.562 kb on - strand, within MPMX19_05025 at 511.562 kb on - strand, within MPMX19_05025 at 511.562 kb on - strand, within MPMX19_05025 at 511.562 kb on - strand, within MPMX19_05025 at 511.562 kb on - strand, within MPMX19_05025 at 511.562 kb on - strand, within MPMX19_05025 at 511.562 kb on - strand, within MPMX19_05025 at 511.696 kb on + strand at 511.696 kb on + strand at 511.696 kb on + strand at 511.697 kb on - strand at 511.697 kb on - strand at 511.705 kb on + strand at 511.705 kb on + strand at 511.705 kb on + strand at 511.706 kb on - strand at 511.706 kb on - strand at 511.711 kb on + strand at 511.711 kb on + strand at 511.711 kb on + strand at 511.750 kb on + strand at 511.750 kb on + strand at 511.750 kb on + strand at 511.780 kb on - strand at 512.085 kb on + strand, within MPMX19_05026 at 512.085 kb on + strand, within MPMX19_05026 at 512.085 kb on + strand, within MPMX19_05026 at 512.085 kb on + strand, within MPMX19_05026 at 512.085 kb on + strand, within MPMX19_05026 at 512.085 kb on + strand, within MPMX19_05026 at 512.085 kb on + strand, within MPMX19_05026 at 512.085 kb on + strand, within MPMX19_05026 at 512.085 kb on + strand, within MPMX19_05026 at 512.085 kb on + strand, within MPMX19_05026 at 512.085 kb on + strand, within MPMX19_05026 at 512.086 kb on - strand, within MPMX19_05026 at 512.086 kb on - strand, within MPMX19_05026 at 512.086 kb on - strand, within MPMX19_05026 at 512.086 kb on - strand, within MPMX19_05026 at 512.086 kb on - strand, within MPMX19_05026 at 512.086 kb on - strand, within MPMX19_05026 at 512.086 kb on - strand, within MPMX19_05026 at 512.086 kb on - strand, within MPMX19_05026 at 512.086 kb on - strand, within MPMX19_05026 at 512.086 kb on - strand, within MPMX19_05026 at 512.086 kb on - strand, within MPMX19_05026 at 512.086 kb on - strand, within MPMX19_05026 at 512.086 kb on - strand, within MPMX19_05026 at 512.086 kb on - strand, within MPMX19_05026 at 512.175 kb on + strand, within MPMX19_05026 at 512.175 kb on + strand, within MPMX19_05026 at 512.175 kb on + strand, within MPMX19_05026 at 512.175 kb on + strand, within MPMX19_05026 at 512.175 kb on + strand, within MPMX19_05026 at 512.175 kb on + strand, within MPMX19_05026 at 512.175 kb on + strand, within MPMX19_05026 at 512.175 kb on + strand, within MPMX19_05026 at 512.175 kb on + strand, within MPMX19_05026 at 512.175 kb on + strand, within MPMX19_05026 at 512.175 kb on + strand, within MPMX19_05026 at 512.175 kb on + strand, within MPMX19_05026 at 512.175 kb on + strand, within MPMX19_05026 at 512.176 kb on - strand, within MPMX19_05026 at 512.176 kb on - strand, within MPMX19_05026 at 512.176 kb on - strand, within MPMX19_05026 at 512.176 kb on - strand, within MPMX19_05026 at 512.176 kb on - strand, within MPMX19_05026 at 512.176 kb on - strand, within MPMX19_05026 at 512.176 kb on - strand, within MPMX19_05026 at 512.176 kb on - strand, within MPMX19_05026 at 512.176 kb on - strand, within MPMX19_05026 at 512.176 kb on - strand, within MPMX19_05026 at 512.176 kb on - strand, within MPMX19_05026 at 512.176 kb on - strand, within MPMX19_05026 at 512.176 kb on - strand, within MPMX19_05026 at 512.176 kb on - strand, within MPMX19_05026 at 512.176 kb on - strand, within MPMX19_05026 at 512.176 kb on - strand, within MPMX19_05026 at 512.176 kb on - strand, within MPMX19_05026 at 512.176 kb on - strand, within MPMX19_05026 at 512.397 kb on + strand, within MPMX19_05026 at 512.397 kb on + strand, within MPMX19_05026 at 512.398 kb on - strand, within MPMX19_05026 at 512.398 kb on - strand, within MPMX19_05026 at 512.398 kb on - strand, within MPMX19_05026 at 512.398 kb on - strand, within MPMX19_05026 at 512.514 kb on + strand at 512.514 kb on + strand at 512.515 kb on - strand at 512.520 kb on + strand at 512.521 kb on - strand at 512.582 kb on - strand at 512.639 kb on + strand at 512.640 kb on - strand at 512.830 kb on - strand, within MPMX19_05027 at 512.830 kb on - strand, within MPMX19_05027 at 512.830 kb on - strand, within MPMX19_05027 at 512.830 kb on - strand, within MPMX19_05027 at 512.830 kb on - strand, within MPMX19_05027 at 512.833 kb on - strand, within MPMX19_05027 at 512.833 kb on - strand, within MPMX19_05027 at 512.833 kb on - strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.097 kb on + strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.098 kb on - strand, within MPMX19_05027 at 513.297 kb on + strand at 513.297 kb on + strand at 513.297 kb on + strand at 513.297 kb on + strand at 513.297 kb on + strand at 513.297 kb on + strand at 513.297 kb on + strand at 513.298 kb on - strand at 513.298 kb on - strand at 513.298 kb on - strand at 513.298 kb on - strand at 513.298 kb on - strand at 513.298 kb on - strand at 513.298 kb on - strand at 513.298 kb on - strand at 513.299 kb on + strand at 513.299 kb on + strand at 513.299 kb on + strand at 513.299 kb on + strand at 513.299 kb on + strand at 513.299 kb on + strand at 513.299 kb on + strand at 513.299 kb on + strand at 513.299 kb on + strand at 513.299 kb on + strand at 513.299 kb on + strand at 513.299 kb on + strand at 513.299 kb on + strand at 513.299 kb on + strand at 513.299 kb on + strand at 513.299 kb on + strand at 513.299 kb on + strand at 513.299 kb on + strand at 513.299 kb on + strand at 513.299 kb on + strand at 513.299 kb on + strand at 513.300 kb on - strand at 513.300 kb on - strand at 513.300 kb on - strand at 513.300 kb on - strand at 513.300 kb on - strand at 513.300 kb on - strand at 513.300 kb on - strand at 513.300 kb on - strand at 513.300 kb on - strand at 513.300 kb on - strand at 513.300 kb on - strand at 513.300 kb on - strand at 513.300 kb on - strand at 513.300 kb on - strand at 513.300 kb on - strand at 513.300 kb on - strand at 513.300 kb on - strand at 513.300 kb on - strand at 513.300 kb on - strand at 513.398 kb on - strand at 513.398 kb on - strand at 513.398 kb on - strand at 513.398 kb on - strand at 513.398 kb on - strand at 513.495 kb on + strand at 513.495 kb on + strand at 513.495 kb on + strand at 513.495 kb on + strand at 513.496 kb on - strand at 513.496 kb on - strand at 513.496 kb on - strand at 513.496 kb on - strand at 513.496 kb on - strand at 513.509 kb on + strand at 513.509 kb on + strand at 513.509 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 510,853 + MPMX19_05025 0.11 -2.1 510,853 + MPMX19_05025 0.11 -0.5 510,854 - MPMX19_05025 0.11 -1.2 510,854 - MPMX19_05025 0.11 -1.0 510,979 + MPMX19_05025 0.24 -0.1 510,980 - MPMX19_05025 0.24 -0.3 510,980 - MPMX19_05025 0.24 +1.0 510,980 - MPMX19_05025 0.24 -2.5 510,980 - MPMX19_05025 0.24 +0.6 510,980 - MPMX19_05025 0.24 +1.1 511,003 + MPMX19_05025 0.26 -0.7 511,003 + MPMX19_05025 0.26 -1.0 511,003 + MPMX19_05025 0.26 -0.1 511,003 + MPMX19_05025 0.26 -0.5 511,004 - MPMX19_05025 0.26 -0.2 511,004 - MPMX19_05025 0.26 -1.6 511,004 - MPMX19_05025 0.26 -0.9 511,004 - MPMX19_05025 0.26 -1.5 511,004 - MPMX19_05025 0.26 -1.6 511,004 - MPMX19_05025 0.26 -0.7 511,004 - MPMX19_05025 0.26 -0.3 511,004 - MPMX19_05025 0.26 -0.2 511,004 - MPMX19_05025 0.26 +0.8 511,004 - MPMX19_05025 0.26 -0.2 511,004 - MPMX19_05025 0.26 +1.1 511,004 - MPMX19_05025 0.26 +0.1 511,180 + MPMX19_05025 0.43 +1.4 511,180 + MPMX19_05025 0.43 -0.6 511,180 + MPMX19_05025 0.43 -0.5 511,180 + MPMX19_05025 0.43 -0.9 511,180 + MPMX19_05025 0.43 -0.2 511,181 - MPMX19_05025 0.43 -0.4 511,181 - MPMX19_05025 0.43 -0.4 511,261 + MPMX19_05025 0.51 +1.1 511,262 - MPMX19_05025 0.51 -1.4 511,262 - MPMX19_05025 0.51 -1.5 511,561 + MPMX19_05025 0.81 -1.2 511,561 + MPMX19_05025 0.81 -0.4 511,561 + MPMX19_05025 0.81 +0.5 511,561 + MPMX19_05025 0.81 +0.4 511,562 - MPMX19_05025 0.81 +0.4 511,562 - MPMX19_05025 0.81 +0.7 511,562 - MPMX19_05025 0.81 +0.2 511,562 - MPMX19_05025 0.81 +0.8 511,562 - MPMX19_05025 0.81 -0.4 511,562 - MPMX19_05025 0.81 -0.3 511,562 - MPMX19_05025 0.81 -0.6 511,562 - MPMX19_05025 0.81 -1.1 511,696 + +0.1 511,696 + -0.4 511,696 + +0.2 511,697 - +0.5 511,697 - -0.7 511,705 + +0.2 511,705 + -2.3 511,705 + -0.6 511,706 - -0.2 511,706 - +1.6 511,711 + +0.2 511,711 + -0.6 511,711 + +1.3 511,750 + -0.4 511,750 + +0.6 511,750 + -0.1 511,780 - -0.0 512,085 + MPMX19_05026 0.38 +0.8 512,085 + MPMX19_05026 0.38 -0.8 512,085 + MPMX19_05026 0.38 -0.6 512,085 + MPMX19_05026 0.38 -0.0 512,085 + MPMX19_05026 0.38 +0.6 512,085 + MPMX19_05026 0.38 +1.1 512,085 + MPMX19_05026 0.38 +0.1 512,085 + MPMX19_05026 0.38 +1.9 512,085 + MPMX19_05026 0.38 -0.2 512,085 + MPMX19_05026 0.38 +3.2 512,085 + MPMX19_05026 0.38 +0.2 512,086 - MPMX19_05026 0.39 +1.0 512,086 - MPMX19_05026 0.39 -0.4 512,086 - MPMX19_05026 0.39 -0.6 512,086 - MPMX19_05026 0.39 +0.6 512,086 - MPMX19_05026 0.39 +0.2 512,086 - MPMX19_05026 0.39 -0.2 512,086 - MPMX19_05026 0.39 -1.5 512,086 - MPMX19_05026 0.39 +0.5 512,086 - MPMX19_05026 0.39 -0.3 512,086 - MPMX19_05026 0.39 +2.6 512,086 - MPMX19_05026 0.39 -2.5 512,086 - MPMX19_05026 0.39 +0.4 512,086 - MPMX19_05026 0.39 +0.3 512,086 - MPMX19_05026 0.39 +0.0 512,175 + MPMX19_05026 0.51 -1.6 512,175 + MPMX19_05026 0.51 -0.5 512,175 + MPMX19_05026 0.51 -0.4 512,175 + MPMX19_05026 0.51 -1.3 512,175 + MPMX19_05026 0.51 +0.7 512,175 + MPMX19_05026 0.51 -0.1 512,175 + MPMX19_05026 0.51 +1.2 512,175 + MPMX19_05026 0.51 -0.6 512,175 + MPMX19_05026 0.51 +0.0 512,175 + MPMX19_05026 0.51 -0.8 512,175 + MPMX19_05026 0.51 -0.1 512,175 + MPMX19_05026 0.51 -0.3 512,175 + MPMX19_05026 0.51 +0.3 512,176 - MPMX19_05026 0.51 +1.8 512,176 - MPMX19_05026 0.51 -0.1 512,176 - MPMX19_05026 0.51 -1.8 512,176 - MPMX19_05026 0.51 +0.6 512,176 - MPMX19_05026 0.51 +0.2 512,176 - MPMX19_05026 0.51 +0.3 512,176 - MPMX19_05026 0.51 -0.4 512,176 - MPMX19_05026 0.51 -0.3 512,176 - MPMX19_05026 0.51 +0.9 512,176 - MPMX19_05026 0.51 -0.2 512,176 - MPMX19_05026 0.51 +0.5 512,176 - MPMX19_05026 0.51 -0.2 512,176 - MPMX19_05026 0.51 -0.5 512,176 - MPMX19_05026 0.51 +0.3 512,176 - MPMX19_05026 0.51 +0.2 512,176 - MPMX19_05026 0.51 -0.2 512,176 - MPMX19_05026 0.51 +0.1 512,176 - MPMX19_05026 0.51 -0.6 512,397 + MPMX19_05026 0.83 -1.1 512,397 + MPMX19_05026 0.83 +0.1 512,398 - MPMX19_05026 0.83 +0.9 512,398 - MPMX19_05026 0.83 -1.9 512,398 - MPMX19_05026 0.83 -1.1 512,398 - MPMX19_05026 0.83 -0.8 512,514 + -1.8 512,514 + -0.2 512,515 - -0.2 512,520 + -1.1 512,521 - -0.6 512,582 - -1.4 512,639 + +0.4 512,640 - -1.2 512,830 - MPMX19_05027 0.29 +1.1 512,830 - MPMX19_05027 0.29 +0.2 512,830 - MPMX19_05027 0.29 -2.3 512,830 - MPMX19_05027 0.29 -2.0 512,830 - MPMX19_05027 0.29 -0.8 512,833 - MPMX19_05027 0.29 -2.5 512,833 - MPMX19_05027 0.29 -1.6 512,833 - MPMX19_05027 0.29 +1.0 513,097 + MPMX19_05027 0.66 +0.2 513,097 + MPMX19_05027 0.66 +1.2 513,097 + MPMX19_05027 0.66 -0.8 513,097 + MPMX19_05027 0.66 +0.1 513,097 + MPMX19_05027 0.66 -0.9 513,097 + MPMX19_05027 0.66 -0.4 513,097 + MPMX19_05027 0.66 -0.8 513,097 + MPMX19_05027 0.66 -0.8 513,097 + MPMX19_05027 0.66 -1.2 513,097 + MPMX19_05027 0.66 -0.6 513,097 + MPMX19_05027 0.66 +2.2 513,097 + MPMX19_05027 0.66 +0.2 513,097 + MPMX19_05027 0.66 -1.0 513,097 + MPMX19_05027 0.66 -0.9 513,097 + MPMX19_05027 0.66 -0.3 513,097 + MPMX19_05027 0.66 -0.1 513,097 + MPMX19_05027 0.66 -0.9 513,097 + MPMX19_05027 0.66 -0.7 513,097 + MPMX19_05027 0.66 +0.2 513,097 + MPMX19_05027 0.66 -0.5 513,097 + MPMX19_05027 0.66 -0.9 513,097 + MPMX19_05027 0.66 +0.6 513,098 - MPMX19_05027 0.66 +0.4 513,098 - MPMX19_05027 0.66 +0.2 513,098 - MPMX19_05027 0.66 +0.6 513,098 - MPMX19_05027 0.66 +1.6 513,098 - MPMX19_05027 0.66 -0.9 513,098 - MPMX19_05027 0.66 -0.3 513,098 - MPMX19_05027 0.66 -0.0 513,098 - MPMX19_05027 0.66 -0.9 513,098 - MPMX19_05027 0.66 -0.2 513,098 - MPMX19_05027 0.66 -1.6 513,098 - MPMX19_05027 0.66 -0.8 513,098 - MPMX19_05027 0.66 -0.9 513,098 - MPMX19_05027 0.66 +0.2 513,098 - MPMX19_05027 0.66 -0.3 513,098 - MPMX19_05027 0.66 +0.2 513,098 - MPMX19_05027 0.66 +0.2 513,098 - MPMX19_05027 0.66 +1.0 513,098 - MPMX19_05027 0.66 -0.3 513,098 - MPMX19_05027 0.66 -0.8 513,098 - MPMX19_05027 0.66 -0.4 513,098 - MPMX19_05027 0.66 -1.3 513,098 - MPMX19_05027 0.66 -0.0 513,098 - MPMX19_05027 0.66 -0.1 513,098 - MPMX19_05027 0.66 -1.0 513,098 - MPMX19_05027 0.66 +0.3 513,297 + -0.2 513,297 + +0.2 513,297 + -0.5 513,297 + +0.3 513,297 + -0.4 513,297 + -0.0 513,297 + -1.4 513,298 - +0.2 513,298 - +0.2 513,298 - -1.9 513,298 - -0.4 513,298 - -0.0 513,298 - -1.2 513,298 - +0.1 513,298 - -1.0 513,299 + -0.1 513,299 + -0.4 513,299 + -0.8 513,299 + +1.0 513,299 + +0.4 513,299 + -1.0 513,299 + +0.6 513,299 + -0.5 513,299 + +1.1 513,299 + +0.3 513,299 + +1.1 513,299 + +0.4 513,299 + +1.6 513,299 + -0.3 513,299 + -0.4 513,299 + -0.8 513,299 + +0.1 513,299 + +0.0 513,299 + +0.3 513,299 + -0.4 513,299 + -0.6 513,300 - +0.3 513,300 - -0.4 513,300 - +0.5 513,300 - +0.2 513,300 - +1.0 513,300 - -1.4 513,300 - +0.1 513,300 - +0.7 513,300 - -1.9 513,300 - -0.3 513,300 - -0.6 513,300 - +0.8 513,300 - -2.0 513,300 - -0.9 513,300 - -1.1 513,300 - -2.2 513,300 - -0.8 513,300 - -0.6 513,300 - -0.2 513,398 - -1.3 513,398 - -0.2 513,398 - -0.6 513,398 - +0.9 513,398 - -1.2 513,495 + +1.0 513,495 + -0.4 513,495 + +0.2 513,495 + -0.2 513,496 - +1.1 513,496 - +0.4 513,496 - -0.2 513,496 - -0.0 513,496 - -0.5 513,509 + +0.7 513,509 + +0.1 513,509 + -0.8
Or see this region's nucleotide sequence