Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04727

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04726 and MPMX19_04727 are separated by 140 nucleotidesMPMX19_04727 and MPMX19_04728 are separated by 3 nucleotides MPMX19_04726: MPMX19_04726 - Glycine betaine/choline transport system permease protein OusW, at 117,597 to 118,481 _04726 MPMX19_04727: MPMX19_04727 - hypothetical protein, at 118,622 to 119,224 _04727 MPMX19_04728: MPMX19_04728 - Aminodeoxychorismate synthase component 1, at 119,228 to 120,679 _04728 Position (kb) 118 119 120Strain fitness (log2 ratio) -2 -1 0 1 2 3at 118.008 kb on + strand, within MPMX19_04726at 118.008 kb on + strand, within MPMX19_04726at 118.008 kb on + strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.435 kb on + strandat 118.712 kb on + strand, within MPMX19_04727at 118.712 kb on + strand, within MPMX19_04727at 118.713 kb on - strand, within MPMX19_04727at 118.713 kb on - strand, within MPMX19_04727at 118.719 kb on - strand, within MPMX19_04727at 118.719 kb on - strand, within MPMX19_04727at 118.737 kb on - strand, within MPMX19_04727at 118.748 kb on + strand, within MPMX19_04727at 118.748 kb on + strand, within MPMX19_04727at 118.748 kb on + strand, within MPMX19_04727at 118.748 kb on + strand, within MPMX19_04727at 118.748 kb on + strand, within MPMX19_04727at 118.749 kb on - strand, within MPMX19_04727at 118.749 kb on - strand, within MPMX19_04727at 118.749 kb on - strand, within MPMX19_04727at 118.749 kb on - strand, within MPMX19_04727at 118.907 kb on + strand, within MPMX19_04727at 118.908 kb on - strand, within MPMX19_04727at 119.069 kb on + strand, within MPMX19_04727at 119.070 kb on - strand, within MPMX19_04727at 119.312 kb on + strandat 119.591 kb on + strand, within MPMX19_04728at 119.592 kb on - strand, within MPMX19_04728at 119.672 kb on + strand, within MPMX19_04728at 119.673 kb on - strand, within MPMX19_04728at 119.673 kb on - strand, within MPMX19_04728at 119.880 kb on - strand, within MPMX19_04728at 119.880 kb on - strand, within MPMX19_04728at 119.909 kb on + strand, within MPMX19_04728at 119.909 kb on + strand, within MPMX19_04728at 119.909 kb on + strand, within MPMX19_04728at 119.909 kb on + strand, within MPMX19_04728at 119.909 kb on + strand, within MPMX19_04728at 119.909 kb on + strand, within MPMX19_04728at 119.910 kb on - strand, within MPMX19_04728at 119.910 kb on - strand, within MPMX19_04728at 119.910 kb on - strand, within MPMX19_04728at 119.910 kb on - strand, within MPMX19_04728at 119.910 kb on - strand, within MPMX19_04728at 119.910 kb on - strand, within MPMX19_04728at 119.910 kb on - strand, within MPMX19_04728at 119.910 kb on - strand, within MPMX19_04728

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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118,008 + MPMX19_04726 0.46 +1.5
118,008 + MPMX19_04726 0.46 -1.7
118,008 + MPMX19_04726 0.46 -1.3
118,009 - MPMX19_04726 0.47 +1.5
118,009 - MPMX19_04726 0.47 +0.4
118,009 - MPMX19_04726 0.47 -0.8
118,009 - MPMX19_04726 0.47 +1.7
118,009 - MPMX19_04726 0.47 +0.4
118,009 - MPMX19_04726 0.47 +0.0
118,009 - MPMX19_04726 0.47 -1.0
118,435 + -1.3
118,712 + MPMX19_04727 0.15 -0.0
118,712 + MPMX19_04727 0.15 +0.2
118,713 - MPMX19_04727 0.15 +2.0
118,713 - MPMX19_04727 0.15 -0.2
118,719 - MPMX19_04727 0.16 +1.0
118,719 - MPMX19_04727 0.16 +0.5
118,737 - MPMX19_04727 0.19 +1.1
118,748 + MPMX19_04727 0.21 +0.5
118,748 + MPMX19_04727 0.21 -0.5
118,748 + MPMX19_04727 0.21 +1.4
118,748 + MPMX19_04727 0.21 +0.5
118,748 + MPMX19_04727 0.21 -1.5
118,749 - MPMX19_04727 0.21 +0.2
118,749 - MPMX19_04727 0.21 +0.2
118,749 - MPMX19_04727 0.21 +1.1
118,749 - MPMX19_04727 0.21 -0.5
118,907 + MPMX19_04727 0.47 -0.9
118,908 - MPMX19_04727 0.47 -0.5
119,069 + MPMX19_04727 0.74 +0.8
119,070 - MPMX19_04727 0.74 +1.3
119,312 + +3.1
119,591 + MPMX19_04728 0.25 -0.7
119,592 - MPMX19_04728 0.25 +1.1
119,672 + MPMX19_04728 0.31 -1.1
119,673 - MPMX19_04728 0.31 +0.2
119,673 - MPMX19_04728 0.31 -1.4
119,880 - MPMX19_04728 0.45 -0.5
119,880 - MPMX19_04728 0.45 -1.4
119,909 + MPMX19_04728 0.47 -0.8
119,909 + MPMX19_04728 0.47 -0.3
119,909 + MPMX19_04728 0.47 -0.1
119,909 + MPMX19_04728 0.47 +0.1
119,909 + MPMX19_04728 0.47 +0.9
119,909 + MPMX19_04728 0.47 -1.7
119,910 - MPMX19_04728 0.47 -0.6
119,910 - MPMX19_04728 0.47 -1.0
119,910 - MPMX19_04728 0.47 -0.4
119,910 - MPMX19_04728 0.47 -2.0
119,910 - MPMX19_04728 0.47 -0.8
119,910 - MPMX19_04728 0.47 -0.9
119,910 - MPMX19_04728 0.47 -0.4
119,910 - MPMX19_04728 0.47 -0.5

Or see this region's nucleotide sequence