Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03918

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03916 and MPMX19_03917 overlap by 8 nucleotidesMPMX19_03917 and MPMX19_03918 overlap by 37 nucleotidesMPMX19_03918 and MPMX19_03919 are separated by 258 nucleotides MPMX19_03916: MPMX19_03916 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 194,426 to 195,076 _03916 MPMX19_03917: MPMX19_03917 - putative 2-dehydro-3-deoxygalactonokinase DgoK1, at 195,069 to 196,088 _03917 MPMX19_03918: MPMX19_03918 - DNA-binding transcriptional repressor YiaJ, at 196,052 to 196,906 _03918 MPMX19_03919: MPMX19_03919 - Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase, at 197,165 to 197,941 _03919 Position (kb) 196 197Strain fitness (log2 ratio) -2 -1 0 1 2at 195.202 kb on + strand, within MPMX19_03917at 195.202 kb on + strand, within MPMX19_03917at 195.203 kb on - strand, within MPMX19_03917at 195.203 kb on - strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.550 kb on + strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.551 kb on - strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.718 kb on + strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.719 kb on - strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.817 kb on + strand, within MPMX19_03917at 195.818 kb on - strand, within MPMX19_03917at 195.818 kb on - strand, within MPMX19_03917at 195.818 kb on - strand, within MPMX19_03917at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.164 kb on + strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.165 kb on - strand, within MPMX19_03918at 196.311 kb on + strand, within MPMX19_03918at 196.311 kb on + strand, within MPMX19_03918at 196.351 kb on + strand, within MPMX19_03918at 196.352 kb on - strand, within MPMX19_03918at 196.352 kb on - strand, within MPMX19_03918at 196.509 kb on + strand, within MPMX19_03918at 196.509 kb on + strand, within MPMX19_03918at 196.509 kb on + strand, within MPMX19_03918at 196.509 kb on + strand, within MPMX19_03918at 196.509 kb on + strand, within MPMX19_03918at 196.510 kb on - strand, within MPMX19_03918at 196.510 kb on - strand, within MPMX19_03918at 196.510 kb on - strand, within MPMX19_03918at 196.510 kb on - strand, within MPMX19_03918at 196.510 kb on - strand, within MPMX19_03918at 196.510 kb on - strand, within MPMX19_03918at 196.510 kb on - strand, within MPMX19_03918at 196.510 kb on - strand, within MPMX19_03918at 196.659 kb on + strand, within MPMX19_03918at 196.659 kb on + strand, within MPMX19_03918at 196.660 kb on - strand, within MPMX19_03918at 196.660 kb on - strand, within MPMX19_03918at 196.660 kb on - strand, within MPMX19_03918at 196.660 kb on - strand, within MPMX19_03918at 196.660 kb on - strand, within MPMX19_03918at 196.660 kb on - strand, within MPMX19_03918at 196.668 kb on + strand, within MPMX19_03918at 196.668 kb on + strand, within MPMX19_03918at 196.668 kb on + strand, within MPMX19_03918at 196.668 kb on + strand, within MPMX19_03918at 196.668 kb on + strand, within MPMX19_03918at 196.668 kb on + strand, within MPMX19_03918at 196.669 kb on - strand, within MPMX19_03918at 196.669 kb on - strand, within MPMX19_03918at 196.686 kb on + strand, within MPMX19_03918at 196.686 kb on + strand, within MPMX19_03918at 196.687 kb on - strand, within MPMX19_03918at 196.687 kb on - strand, within MPMX19_03918at 196.687 kb on - strand, within MPMX19_03918at 196.687 kb on - strand, within MPMX19_03918at 196.687 kb on - strand, within MPMX19_03918at 196.932 kb on + strandat 196.932 kb on + strandat 196.932 kb on + strandat 196.932 kb on + strandat 196.933 kb on - strandat 196.933 kb on - strandat 196.946 kb on + strandat 196.946 kb on + strandat 196.946 kb on + strandat 196.946 kb on + strandat 196.946 kb on + strandat 196.946 kb on + strandat 196.946 kb on + strandat 196.947 kb on - strandat 196.947 kb on - strandat 196.947 kb on - strandat 196.979 kb on + strandat 197.006 kb on - strandat 197.046 kb on + strandat 197.047 kb on - strandat 197.047 kb on - strandat 197.047 kb on - strandat 197.052 kb on + strandat 197.052 kb on + strandat 197.052 kb on + strandat 197.052 kb on + strandat 197.066 kb on + strandat 197.066 kb on + strandat 197.077 kb on - strandat 197.102 kb on + strandat 197.102 kb on + strandat 197.102 kb on + strandat 197.103 kb on - strandat 197.543 kb on + strand, within MPMX19_03919at 197.543 kb on + strand, within MPMX19_03919at 197.543 kb on + strand, within MPMX19_03919at 197.543 kb on + strand, within MPMX19_03919at 197.543 kb on + strand, within MPMX19_03919at 197.544 kb on - strand, within MPMX19_03919at 197.544 kb on - strand, within MPMX19_03919at 197.544 kb on - strand, within MPMX19_03919at 197.544 kb on - strand, within MPMX19_03919at 197.544 kb on - strand, within MPMX19_03919at 197.625 kb on - strand, within MPMX19_03919at 197.654 kb on + strand, within MPMX19_03919at 197.654 kb on + strand, within MPMX19_03919at 197.654 kb on + strand, within MPMX19_03919at 197.654 kb on + strand, within MPMX19_03919at 197.655 kb on - strand, within MPMX19_03919at 197.655 kb on - strand, within MPMX19_03919at 197.655 kb on - strand, within MPMX19_03919at 197.655 kb on - strand, within MPMX19_03919at 197.655 kb on - strand, within MPMX19_03919at 197.655 kb on - strand, within MPMX19_03919at 197.655 kb on - strand, within MPMX19_03919at 197.892 kb on - strandat 197.892 kb on - strandat 197.892 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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195,202 + MPMX19_03917 0.13 -1.3
195,202 + MPMX19_03917 0.13 -0.9
195,203 - MPMX19_03917 0.13 +1.1
195,203 - MPMX19_03917 0.13 -0.2
195,550 + MPMX19_03917 0.47 -0.8
195,550 + MPMX19_03917 0.47 +0.8
195,550 + MPMX19_03917 0.47 -2.2
195,550 + MPMX19_03917 0.47 -0.7
195,550 + MPMX19_03917 0.47 -0.8
195,550 + MPMX19_03917 0.47 -0.7
195,550 + MPMX19_03917 0.47 -1.7
195,550 + MPMX19_03917 0.47 -1.6
195,550 + MPMX19_03917 0.47 +0.0
195,550 + MPMX19_03917 0.47 -0.2
195,550 + MPMX19_03917 0.47 -0.9
195,550 + MPMX19_03917 0.47 -0.9
195,550 + MPMX19_03917 0.47 -0.1
195,550 + MPMX19_03917 0.47 +1.0
195,550 + MPMX19_03917 0.47 -1.6
195,550 + MPMX19_03917 0.47 -0.7
195,550 + MPMX19_03917 0.47 -2.0
195,550 + MPMX19_03917 0.47 +0.2
195,550 + MPMX19_03917 0.47 +0.3
195,550 + MPMX19_03917 0.47 -0.5
195,550 + MPMX19_03917 0.47 -1.0
195,550 + MPMX19_03917 0.47 +1.1
195,550 + MPMX19_03917 0.47 -1.4
195,551 - MPMX19_03917 0.47 -0.7
195,551 - MPMX19_03917 0.47 +0.2
195,551 - MPMX19_03917 0.47 -0.7
195,551 - MPMX19_03917 0.47 +0.8
195,551 - MPMX19_03917 0.47 -1.7
195,551 - MPMX19_03917 0.47 -0.2
195,551 - MPMX19_03917 0.47 -0.2
195,551 - MPMX19_03917 0.47 +0.0
195,551 - MPMX19_03917 0.47 -1.9
195,551 - MPMX19_03917 0.47 -1.9
195,551 - MPMX19_03917 0.47 -0.9
195,551 - MPMX19_03917 0.47 -0.1
195,551 - MPMX19_03917 0.47 -0.9
195,551 - MPMX19_03917 0.47 -0.9
195,551 - MPMX19_03917 0.47 +1.8
195,551 - MPMX19_03917 0.47 -0.6
195,551 - MPMX19_03917 0.47 -2.3
195,551 - MPMX19_03917 0.47 +0.5
195,551 - MPMX19_03917 0.47 -0.4
195,551 - MPMX19_03917 0.47 -0.1
195,551 - MPMX19_03917 0.47 +0.0
195,551 - MPMX19_03917 0.47 -1.6
195,551 - MPMX19_03917 0.47 -1.4
195,551 - MPMX19_03917 0.47 +0.4
195,551 - MPMX19_03917 0.47 -1.5
195,551 - MPMX19_03917 0.47 +1.0
195,551 - MPMX19_03917 0.47 -0.4
195,551 - MPMX19_03917 0.47 -0.3
195,718 + MPMX19_03917 0.64 -0.1
195,718 + MPMX19_03917 0.64 +0.2
195,718 + MPMX19_03917 0.64 +1.9
195,718 + MPMX19_03917 0.64 -0.7
195,718 + MPMX19_03917 0.64 +0.9
195,718 + MPMX19_03917 0.64 +0.2
195,718 + MPMX19_03917 0.64 -0.4
195,718 + MPMX19_03917 0.64 -0.4
195,718 + MPMX19_03917 0.64 -0.1
195,718 + MPMX19_03917 0.64 -0.3
195,719 - MPMX19_03917 0.64 -0.6
195,719 - MPMX19_03917 0.64 +0.6
195,719 - MPMX19_03917 0.64 -2.0
195,719 - MPMX19_03917 0.64 -0.2
195,719 - MPMX19_03917 0.64 +0.6
195,719 - MPMX19_03917 0.64 +1.2
195,719 - MPMX19_03917 0.64 -1.2
195,719 - MPMX19_03917 0.64 -0.4
195,817 + MPMX19_03917 0.73 -1.2
195,817 + MPMX19_03917 0.73 +0.9
195,817 + MPMX19_03917 0.73 -1.4
195,817 + MPMX19_03917 0.73 -1.3
195,817 + MPMX19_03917 0.73 +1.3
195,817 + MPMX19_03917 0.73 -0.1
195,817 + MPMX19_03917 0.73 +1.3
195,817 + MPMX19_03917 0.73 -0.0
195,817 + MPMX19_03917 0.73 +0.1
195,817 + MPMX19_03917 0.73 +0.0
195,817 + MPMX19_03917 0.73 -0.9
195,817 + MPMX19_03917 0.73 -0.8
195,817 + MPMX19_03917 0.73 +0.9
195,817 + MPMX19_03917 0.73 +0.2
195,818 - MPMX19_03917 0.73 -0.3
195,818 - MPMX19_03917 0.73 +0.0
195,818 - MPMX19_03917 0.73 -1.5
196,164 + MPMX19_03918 0.13 +1.0
196,164 + MPMX19_03918 0.13 -0.4
196,164 + MPMX19_03918 0.13 -1.6
196,164 + MPMX19_03918 0.13 +0.2
196,164 + MPMX19_03918 0.13 +0.8
196,164 + MPMX19_03918 0.13 +0.3
196,164 + MPMX19_03918 0.13 -0.7
196,164 + MPMX19_03918 0.13 -0.9
196,164 + MPMX19_03918 0.13 +0.2
196,164 + MPMX19_03918 0.13 -0.1
196,164 + MPMX19_03918 0.13 +0.0
196,164 + MPMX19_03918 0.13 +1.2
196,164 + MPMX19_03918 0.13 -1.9
196,164 + MPMX19_03918 0.13 +1.6
196,164 + MPMX19_03918 0.13 -0.4
196,164 + MPMX19_03918 0.13 -1.0
196,165 - MPMX19_03918 0.13 -1.1
196,165 - MPMX19_03918 0.13 -1.6
196,165 - MPMX19_03918 0.13 -1.0
196,165 - MPMX19_03918 0.13 +0.8
196,165 - MPMX19_03918 0.13 -0.2
196,165 - MPMX19_03918 0.13 +0.8
196,165 - MPMX19_03918 0.13 -1.6
196,165 - MPMX19_03918 0.13 +0.5
196,165 - MPMX19_03918 0.13 +0.8
196,165 - MPMX19_03918 0.13 +0.3
196,165 - MPMX19_03918 0.13 +0.0
196,311 + MPMX19_03918 0.30 -0.7
196,311 + MPMX19_03918 0.30 -0.2
196,351 + MPMX19_03918 0.35 -1.9
196,352 - MPMX19_03918 0.35 -0.1
196,352 - MPMX19_03918 0.35 +0.6
196,509 + MPMX19_03918 0.53 -0.7
196,509 + MPMX19_03918 0.53 +1.2
196,509 + MPMX19_03918 0.53 +0.0
196,509 + MPMX19_03918 0.53 -1.0
196,509 + MPMX19_03918 0.53 -0.7
196,510 - MPMX19_03918 0.54 +1.8
196,510 - MPMX19_03918 0.54 +0.2
196,510 - MPMX19_03918 0.54 -0.8
196,510 - MPMX19_03918 0.54 +0.1
196,510 - MPMX19_03918 0.54 -0.7
196,510 - MPMX19_03918 0.54 +0.9
196,510 - MPMX19_03918 0.54 -0.6
196,510 - MPMX19_03918 0.54 -0.2
196,659 + MPMX19_03918 0.71 +0.0
196,659 + MPMX19_03918 0.71 -0.2
196,660 - MPMX19_03918 0.71 -0.9
196,660 - MPMX19_03918 0.71 -2.0
196,660 - MPMX19_03918 0.71 -0.2
196,660 - MPMX19_03918 0.71 -0.7
196,660 - MPMX19_03918 0.71 +0.9
196,660 - MPMX19_03918 0.71 +0.1
196,668 + MPMX19_03918 0.72 +0.1
196,668 + MPMX19_03918 0.72 -0.8
196,668 + MPMX19_03918 0.72 -0.3
196,668 + MPMX19_03918 0.72 +0.1
196,668 + MPMX19_03918 0.72 -1.0
196,668 + MPMX19_03918 0.72 -0.6
196,669 - MPMX19_03918 0.72 +0.2
196,669 - MPMX19_03918 0.72 -0.0
196,686 + MPMX19_03918 0.74 +0.0
196,686 + MPMX19_03918 0.74 -0.4
196,687 - MPMX19_03918 0.74 -0.0
196,687 - MPMX19_03918 0.74 -1.9
196,687 - MPMX19_03918 0.74 +0.6
196,687 - MPMX19_03918 0.74 -1.6
196,687 - MPMX19_03918 0.74 +0.0
196,932 + -0.3
196,932 + -0.1
196,932 + +0.9
196,932 + -1.7
196,933 - -1.2
196,933 - +2.0
196,946 + +1.2
196,946 + -0.3
196,946 + -0.9
196,946 + -1.9
196,946 + -0.1
196,946 + -0.3
196,946 + -0.6
196,947 - +1.3
196,947 - +0.2
196,947 - -0.7
196,979 + -2.4
197,006 - -0.7
197,046 + -0.6
197,047 - +1.3
197,047 - -0.7
197,047 - -0.7
197,052 + -0.1
197,052 + -0.1
197,052 + -1.2
197,052 + -0.1
197,066 + -0.9
197,066 + -0.2
197,077 - +0.2
197,102 + -1.3
197,102 + +0.6
197,102 + +0.1
197,103 - -1.0
197,543 + MPMX19_03919 0.49 -0.6
197,543 + MPMX19_03919 0.49 +0.3
197,543 + MPMX19_03919 0.49 -0.6
197,543 + MPMX19_03919 0.49 -0.3
197,543 + MPMX19_03919 0.49 -0.4
197,544 - MPMX19_03919 0.49 -0.6
197,544 - MPMX19_03919 0.49 -0.1
197,544 - MPMX19_03919 0.49 -1.0
197,544 - MPMX19_03919 0.49 -0.9
197,544 - MPMX19_03919 0.49 +2.1
197,625 - MPMX19_03919 0.59 -1.8
197,654 + MPMX19_03919 0.63 +0.2
197,654 + MPMX19_03919 0.63 +0.0
197,654 + MPMX19_03919 0.63 -1.9
197,654 + MPMX19_03919 0.63 -1.4
197,655 - MPMX19_03919 0.63 -0.4
197,655 - MPMX19_03919 0.63 +0.0
197,655 - MPMX19_03919 0.63 +0.6
197,655 - MPMX19_03919 0.63 +0.3
197,655 - MPMX19_03919 0.63 -0.6
197,655 - MPMX19_03919 0.63 +0.9
197,655 - MPMX19_03919 0.63 -0.6
197,892 - +0.3
197,892 - -1.9
197,892 - +0.6

Or see this region's nucleotide sequence