Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03886 and MPMX19_03887 are separated by 116 nucleotides MPMX19_03887 and MPMX19_03888 are separated by 196 nucleotides
MPMX19_03886: MPMX19_03886 - hypothetical protein, at 145,379 to 160,201
_03886
MPMX19_03887: MPMX19_03887 - Photosystem I assembly protein Ycf3, at 160,318 to 162,240
_03887
MPMX19_03888: MPMX19_03888 - Glutathione hydrolase-like YwrD proenzyme, at 162,437 to 164,008
_03888
Position (kb) 160
161
162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 159.389 kb on + strand at 159.389 kb on + strand at 159.389 kb on + strand at 159.389 kb on + strand at 159.390 kb on - strand at 159.390 kb on - strand at 159.542 kb on + strand at 159.543 kb on - strand at 159.693 kb on - strand at 159.693 kb on - strand at 159.693 kb on - strand at 159.693 kb on - strand at 159.761 kb on + strand at 159.821 kb on + strand at 159.821 kb on + strand at 159.821 kb on + strand at 159.821 kb on + strand at 159.821 kb on + strand at 159.821 kb on + strand at 159.822 kb on - strand at 159.822 kb on - strand at 159.822 kb on - strand at 159.822 kb on - strand at 159.822 kb on - strand at 159.822 kb on - strand at 159.822 kb on - strand at 159.822 kb on - strand at 159.822 kb on - strand at 159.822 kb on - strand at 159.890 kb on + strand at 159.890 kb on + strand at 159.890 kb on + strand at 159.890 kb on + strand at 159.890 kb on + strand at 159.891 kb on - strand at 159.891 kb on - strand at 159.891 kb on - strand at 159.950 kb on + strand at 159.950 kb on + strand at 159.950 kb on + strand at 159.950 kb on + strand at 159.950 kb on + strand at 159.950 kb on + strand at 159.950 kb on + strand at 159.950 kb on + strand at 159.951 kb on - strand at 159.951 kb on - strand at 159.951 kb on - strand at 159.951 kb on - strand at 159.951 kb on - strand at 159.951 kb on - strand at 159.951 kb on - strand at 159.951 kb on - strand at 159.951 kb on - strand at 159.951 kb on - strand at 160.010 kb on + strand at 160.010 kb on + strand at 160.010 kb on + strand at 160.011 kb on - strand at 160.011 kb on - strand at 160.011 kb on - strand at 160.019 kb on + strand at 160.019 kb on + strand at 160.019 kb on + strand at 160.019 kb on + strand at 160.020 kb on - strand at 160.020 kb on - strand at 160.079 kb on + strand at 160.079 kb on + strand at 160.080 kb on - strand at 160.133 kb on + strand at 160.133 kb on + strand at 160.133 kb on + strand at 160.133 kb on + strand at 160.134 kb on - strand at 160.134 kb on - strand at 160.134 kb on - strand at 160.134 kb on - strand at 160.134 kb on - strand at 160.461 kb on - strand at 160.847 kb on + strand, within MPMX19_03887 at 160.853 kb on + strand, within MPMX19_03887 at 160.853 kb on + strand, within MPMX19_03887 at 160.853 kb on + strand, within MPMX19_03887 at 160.853 kb on + strand, within MPMX19_03887 at 160.853 kb on + strand, within MPMX19_03887 at 160.854 kb on - strand, within MPMX19_03887 at 161.057 kb on + strand, within MPMX19_03887 at 161.058 kb on - strand, within MPMX19_03887 at 161.195 kb on + strand, within MPMX19_03887 at 161.195 kb on + strand, within MPMX19_03887 at 161.195 kb on + strand, within MPMX19_03887 at 161.196 kb on - strand, within MPMX19_03887 at 161.196 kb on - strand, within MPMX19_03887 at 161.196 kb on - strand, within MPMX19_03887 at 161.196 kb on - strand, within MPMX19_03887 at 161.196 kb on - strand, within MPMX19_03887 at 161.456 kb on + strand, within MPMX19_03887 at 161.456 kb on + strand, within MPMX19_03887 at 161.456 kb on + strand, within MPMX19_03887 at 161.456 kb on + strand, within MPMX19_03887 at 161.456 kb on + strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.472 kb on - strand, within MPMX19_03887 at 161.472 kb on - strand, within MPMX19_03887 at 161.552 kb on - strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.676 kb on - strand, within MPMX19_03887 at 161.676 kb on - strand, within MPMX19_03887 at 161.676 kb on - strand, within MPMX19_03887 at 161.676 kb on - strand, within MPMX19_03887 at 161.676 kb on - strand, within MPMX19_03887 at 161.717 kb on + strand, within MPMX19_03887 at 161.912 kb on + strand, within MPMX19_03887 at 161.912 kb on + strand, within MPMX19_03887 at 161.912 kb on + strand, within MPMX19_03887 at 161.913 kb on - strand, within MPMX19_03887 at 161.913 kb on - strand, within MPMX19_03887 at 161.913 kb on - strand, within MPMX19_03887 at 161.913 kb on - strand, within MPMX19_03887 at 161.976 kb on - strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 162.116 kb on + strand at 162.116 kb on + strand at 162.117 kb on - strand at 162.147 kb on + strand at 162.147 kb on + strand at 162.147 kb on + strand at 162.148 kb on - strand at 162.148 kb on - strand at 162.270 kb on - strand at 162.283 kb on + strand at 162.283 kb on + strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.287 kb on + strand at 162.287 kb on + strand at 162.287 kb on + strand at 162.287 kb on + strand at 162.287 kb on + strand at 162.287 kb on + strand at 162.288 kb on - strand at 162.288 kb on - strand at 162.288 kb on - strand at 162.409 kb on + strand at 162.783 kb on + strand, within MPMX19_03888 at 162.783 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.958 kb on - strand, within MPMX19_03888 at 162.958 kb on - strand, within MPMX19_03888 at 162.958 kb on - strand, within MPMX19_03888 at 162.958 kb on - strand, within MPMX19_03888 at 162.958 kb on - strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.012 kb on - strand, within MPMX19_03888 at 163.012 kb on - strand, within MPMX19_03888 at 163.032 kb on + strand, within MPMX19_03888 at 163.032 kb on + strand, within MPMX19_03888 at 163.033 kb on - strand, within MPMX19_03888 at 163.033 kb on - strand, within MPMX19_03888 at 163.175 kb on + strand, within MPMX19_03888 at 163.176 kb on - strand, within MPMX19_03888
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 159,389 + -0.1 159,389 + +0.0 159,389 + -1.1 159,389 + +0.1 159,390 - -0.6 159,390 - -2.2 159,542 + -0.8 159,543 - -0.3 159,693 - +0.2 159,693 - -1.0 159,693 - +1.1 159,693 - +0.0 159,761 + -1.6 159,821 + -2.5 159,821 + -2.0 159,821 + -1.6 159,821 + -0.5 159,821 + +0.0 159,821 + -0.2 159,822 - +0.3 159,822 - +1.9 159,822 - -0.3 159,822 - +1.3 159,822 - +0.3 159,822 - -0.7 159,822 - -0.6 159,822 - -0.4 159,822 - -0.6 159,822 - -0.4 159,890 + +0.3 159,890 + +1.6 159,890 + -1.1 159,890 + -0.4 159,890 + -0.2 159,891 - -1.7 159,891 - -0.4 159,891 - -0.1 159,950 + +1.3 159,950 + -2.5 159,950 + +0.6 159,950 + -1.4 159,950 + -0.9 159,950 + +1.3 159,950 + -1.0 159,950 + -0.4 159,951 - +0.1 159,951 - +0.4 159,951 - -0.8 159,951 - -2.1 159,951 - -1.0 159,951 - -1.0 159,951 - +0.1 159,951 - -0.5 159,951 - +1.0 159,951 - -0.1 160,010 + +0.4 160,010 + -1.2 160,010 + -2.0 160,011 - -2.2 160,011 - +0.0 160,011 - +0.4 160,019 + -1.3 160,019 + -0.8 160,019 + -0.2 160,019 + -0.6 160,020 - +0.1 160,020 - +0.2 160,079 + +1.3 160,079 + +0.3 160,080 - -1.6 160,133 + -0.2 160,133 + -1.0 160,133 + -1.7 160,133 + +0.3 160,134 - +1.0 160,134 - +0.8 160,134 - -0.5 160,134 - -0.2 160,134 - -0.2 160,461 - -0.7 160,847 + MPMX19_03887 0.28 -0.7 160,853 + MPMX19_03887 0.28 -0.4 160,853 + MPMX19_03887 0.28 -1.9 160,853 + MPMX19_03887 0.28 -1.2 160,853 + MPMX19_03887 0.28 -1.9 160,853 + MPMX19_03887 0.28 -0.6 160,854 - MPMX19_03887 0.28 -0.2 161,057 + MPMX19_03887 0.38 -2.9 161,058 - MPMX19_03887 0.38 +0.9 161,195 + MPMX19_03887 0.46 -1.3 161,195 + MPMX19_03887 0.46 +0.1 161,195 + MPMX19_03887 0.46 -0.3 161,196 - MPMX19_03887 0.46 -1.7 161,196 - MPMX19_03887 0.46 -1.5 161,196 - MPMX19_03887 0.46 +2.2 161,196 - MPMX19_03887 0.46 +0.0 161,196 - MPMX19_03887 0.46 -0.4 161,456 + MPMX19_03887 0.59 -0.4 161,456 + MPMX19_03887 0.59 +0.4 161,456 + MPMX19_03887 0.59 +0.8 161,456 + MPMX19_03887 0.59 -1.6 161,456 + MPMX19_03887 0.59 -0.7 161,457 - MPMX19_03887 0.59 -0.8 161,457 - MPMX19_03887 0.59 -1.7 161,457 - MPMX19_03887 0.59 -0.4 161,457 - MPMX19_03887 0.59 -0.0 161,457 - MPMX19_03887 0.59 -1.4 161,457 - MPMX19_03887 0.59 -0.5 161,457 - MPMX19_03887 0.59 -0.2 161,472 - MPMX19_03887 0.60 -1.0 161,472 - MPMX19_03887 0.60 -0.7 161,552 - MPMX19_03887 0.64 +0.6 161,675 + MPMX19_03887 0.71 -2.0 161,675 + MPMX19_03887 0.71 -0.6 161,675 + MPMX19_03887 0.71 +0.0 161,675 + MPMX19_03887 0.71 -1.4 161,675 + MPMX19_03887 0.71 -0.9 161,675 + MPMX19_03887 0.71 +0.4 161,676 - MPMX19_03887 0.71 -0.3 161,676 - MPMX19_03887 0.71 -1.9 161,676 - MPMX19_03887 0.71 -0.3 161,676 - MPMX19_03887 0.71 -0.3 161,676 - MPMX19_03887 0.71 +0.6 161,717 + MPMX19_03887 0.73 +1.3 161,912 + MPMX19_03887 0.83 +0.0 161,912 + MPMX19_03887 0.83 -0.4 161,912 + MPMX19_03887 0.83 +0.2 161,913 - MPMX19_03887 0.83 +0.4 161,913 - MPMX19_03887 0.83 +0.5 161,913 - MPMX19_03887 0.83 -0.1 161,913 - MPMX19_03887 0.83 -0.6 161,976 - MPMX19_03887 0.86 -0.7 161,978 + MPMX19_03887 0.86 +0.8 161,978 + MPMX19_03887 0.86 +1.1 161,978 + MPMX19_03887 0.86 -1.2 161,978 + MPMX19_03887 0.86 -0.2 161,978 + MPMX19_03887 0.86 +0.3 161,978 + MPMX19_03887 0.86 -1.4 161,978 + MPMX19_03887 0.86 -0.1 161,978 + MPMX19_03887 0.86 -0.3 161,978 + MPMX19_03887 0.86 -0.3 161,978 + MPMX19_03887 0.86 -0.9 161,979 - MPMX19_03887 0.86 +1.6 161,979 - MPMX19_03887 0.86 +0.0 161,979 - MPMX19_03887 0.86 -1.6 161,979 - MPMX19_03887 0.86 -0.5 161,979 - MPMX19_03887 0.86 +0.0 161,979 - MPMX19_03887 0.86 -0.3 161,979 - MPMX19_03887 0.86 -1.1 161,979 - MPMX19_03887 0.86 -1.4 162,116 + -1.0 162,116 + -0.3 162,117 - -0.5 162,147 + -1.0 162,147 + -0.6 162,147 + -1.3 162,148 - -0.4 162,148 - +0.0 162,270 - -1.1 162,283 + -1.2 162,283 + -1.7 162,284 - -0.1 162,284 - -0.7 162,284 - +0.2 162,284 - +0.6 162,284 - -0.5 162,284 - -0.9 162,284 - -1.4 162,284 - -1.0 162,284 - +0.2 162,284 - +0.3 162,287 + +0.6 162,287 + +0.3 162,287 + -1.1 162,287 + -0.4 162,287 + -1.0 162,287 + -0.6 162,288 - +0.4 162,288 - +0.2 162,288 - +1.0 162,409 + +0.3 162,783 + MPMX19_03888 0.22 +0.7 162,783 + MPMX19_03888 0.22 +1.0 162,834 + MPMX19_03888 0.25 +0.3 162,834 + MPMX19_03888 0.25 -1.6 162,834 + MPMX19_03888 0.25 +0.9 162,834 + MPMX19_03888 0.25 +0.6 162,834 + MPMX19_03888 0.25 +0.1 162,834 + MPMX19_03888 0.25 -1.2 162,834 + MPMX19_03888 0.25 -0.0 162,834 + MPMX19_03888 0.25 +0.5 162,835 - MPMX19_03888 0.25 +0.1 162,835 - MPMX19_03888 0.25 -0.5 162,835 - MPMX19_03888 0.25 +0.6 162,835 - MPMX19_03888 0.25 +0.0 162,835 - MPMX19_03888 0.25 +0.0 162,835 - MPMX19_03888 0.25 +0.6 162,835 - MPMX19_03888 0.25 -3.0 162,957 + MPMX19_03888 0.33 +0.5 162,957 + MPMX19_03888 0.33 -1.9 162,957 + MPMX19_03888 0.33 -0.6 162,957 + MPMX19_03888 0.33 +0.9 162,957 + MPMX19_03888 0.33 -0.7 162,957 + MPMX19_03888 0.33 -0.3 162,957 + MPMX19_03888 0.33 +0.8 162,958 - MPMX19_03888 0.33 +0.1 162,958 - MPMX19_03888 0.33 +1.6 162,958 - MPMX19_03888 0.33 -0.1 162,958 - MPMX19_03888 0.33 +0.9 162,958 - MPMX19_03888 0.33 -0.7 163,011 + MPMX19_03888 0.37 +0.1 163,011 + MPMX19_03888 0.37 +0.0 163,011 + MPMX19_03888 0.37 +0.6 163,011 + MPMX19_03888 0.37 -1.5 163,011 + MPMX19_03888 0.37 +1.9 163,011 + MPMX19_03888 0.37 +0.5 163,012 - MPMX19_03888 0.37 -1.0 163,012 - MPMX19_03888 0.37 +0.4 163,032 + MPMX19_03888 0.38 -0.7 163,032 + MPMX19_03888 0.38 -0.4 163,033 - MPMX19_03888 0.38 -1.7 163,033 - MPMX19_03888 0.38 -0.2 163,175 + MPMX19_03888 0.47 -0.2 163,176 - MPMX19_03888 0.47 -0.6
Or see this region's nucleotide sequence