Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03666

Experiment: NL-CCM; ambient oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03664 and MPMX19_03665 overlap by 1 nucleotidesMPMX19_03665 and MPMX19_03666 overlap by 10 nucleotidesMPMX19_03666 and MPMX19_03667 overlap by 4 nucleotidesMPMX19_03667 and MPMX19_03668 overlap by 20 nucleotides MPMX19_03664: MPMX19_03664 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 1,102,211 to 1,103,380 _03664 MPMX19_03665: MPMX19_03665 - hypothetical protein, at 1,103,380 to 1,104,192 _03665 MPMX19_03666: MPMX19_03666 - hypothetical protein, at 1,104,183 to 1,104,632 _03666 MPMX19_03667: MPMX19_03667 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 1,104,629 to 1,105,348 _03667 MPMX19_03668: MPMX19_03668 - hypothetical protein, at 1,105,329 to 1,106,114 _03668 Position (kb) 1104 1105Strain fitness (log2 ratio) -2 -1 0 1at 1103.268 kb on + strandat 1103.269 kb on - strandat 1103.279 kb on + strandat 1103.389 kb on + strandat 1103.389 kb on + strandat 1103.390 kb on - strandat 1103.390 kb on - strandat 1103.390 kb on - strandat 1103.390 kb on - strandat 1103.390 kb on - strandat 1103.390 kb on - strandat 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.470 kb on + strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.471 kb on - strand, within MPMX19_03665at 1103.613 kb on + strand, within MPMX19_03665at 1103.741 kb on - strand, within MPMX19_03665at 1103.872 kb on + strand, within MPMX19_03665at 1103.872 kb on + strand, within MPMX19_03665at 1103.872 kb on + strand, within MPMX19_03665at 1103.872 kb on + strand, within MPMX19_03665at 1103.872 kb on + strand, within MPMX19_03665at 1103.872 kb on + strand, within MPMX19_03665at 1103.872 kb on + strand, within MPMX19_03665at 1103.873 kb on - strand, within MPMX19_03665at 1103.873 kb on - strand, within MPMX19_03665at 1103.913 kb on + strand, within MPMX19_03665at 1104.360 kb on + strand, within MPMX19_03666at 1104.360 kb on + strand, within MPMX19_03666at 1104.360 kb on + strand, within MPMX19_03666at 1104.426 kb on + strand, within MPMX19_03666at 1104.427 kb on - strand, within MPMX19_03666at 1104.427 kb on - strand, within MPMX19_03666at 1104.537 kb on + strand, within MPMX19_03666at 1104.537 kb on + strand, within MPMX19_03666at 1104.537 kb on + strand, within MPMX19_03666at 1104.537 kb on + strand, within MPMX19_03666at 1104.538 kb on - strand, within MPMX19_03666at 1104.538 kb on - strand, within MPMX19_03666at 1104.538 kb on - strand, within MPMX19_03666at 1104.538 kb on - strand, within MPMX19_03666at 1104.538 kb on - strand, within MPMX19_03666at 1104.538 kb on - strand, within MPMX19_03666at 1104.538 kb on - strand, within MPMX19_03666at 1105.076 kb on + strand, within MPMX19_03667at 1105.076 kb on + strand, within MPMX19_03667at 1105.076 kb on + strand, within MPMX19_03667at 1105.076 kb on + strand, within MPMX19_03667at 1105.076 kb on + strand, within MPMX19_03667at 1105.076 kb on + strand, within MPMX19_03667at 1105.076 kb on + strand, within MPMX19_03667at 1105.077 kb on - strand, within MPMX19_03667at 1105.077 kb on - strand, within MPMX19_03667at 1105.077 kb on - strand, within MPMX19_03667at 1105.077 kb on - strand, within MPMX19_03667at 1105.077 kb on - strand, within MPMX19_03667at 1105.077 kb on - strand, within MPMX19_03667at 1105.304 kb on + strandat 1105.304 kb on + strandat 1105.304 kb on + strandat 1105.304 kb on + strandat 1105.304 kb on + strandat 1105.305 kb on - strandat 1105.305 kb on - strandat 1105.305 kb on - strandat 1105.305 kb on - strandat 1105.305 kb on - strandat 1105.305 kb on - strandat 1105.305 kb on - strandat 1105.305 kb on - strandat 1105.305 kb on - strandat 1105.305 kb on - strandat 1105.305 kb on - strandat 1105.453 kb on + strand, within MPMX19_03668at 1105.453 kb on + strand, within MPMX19_03668at 1105.453 kb on + strand, within MPMX19_03668at 1105.453 kb on + strand, within MPMX19_03668at 1105.453 kb on + strand, within MPMX19_03668at 1105.453 kb on + strand, within MPMX19_03668at 1105.453 kb on + strand, within MPMX19_03668at 1105.453 kb on + strand, within MPMX19_03668at 1105.453 kb on + strand, within MPMX19_03668at 1105.453 kb on + strand, within MPMX19_03668at 1105.454 kb on - strand, within MPMX19_03668at 1105.454 kb on - strand, within MPMX19_03668at 1105.454 kb on - strand, within MPMX19_03668at 1105.454 kb on - strand, within MPMX19_03668at 1105.454 kb on - strand, within MPMX19_03668at 1105.454 kb on - strand, within MPMX19_03668at 1105.454 kb on - strand, within MPMX19_03668at 1105.454 kb on - strand, within MPMX19_03668at 1105.454 kb on - strand, within MPMX19_03668at 1105.492 kb on + strand, within MPMX19_03668at 1105.492 kb on + strand, within MPMX19_03668at 1105.493 kb on - strand, within MPMX19_03668

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
remove
1,103,268 + -0.7
1,103,269 - +1.1
1,103,279 + +0.5
1,103,389 + -0.5
1,103,389 + +0.1
1,103,390 - -0.2
1,103,390 - +0.4
1,103,390 - -0.5
1,103,390 - -0.6
1,103,390 - -0.6
1,103,390 - +0.3
1,103,470 + MPMX19_03665 0.11 -1.1
1,103,470 + MPMX19_03665 0.11 -1.1
1,103,470 + MPMX19_03665 0.11 +0.0
1,103,470 + MPMX19_03665 0.11 -0.3
1,103,470 + MPMX19_03665 0.11 -0.2
1,103,470 + MPMX19_03665 0.11 +0.8
1,103,470 + MPMX19_03665 0.11 -0.3
1,103,470 + MPMX19_03665 0.11 -1.0
1,103,470 + MPMX19_03665 0.11 -0.9
1,103,470 + MPMX19_03665 0.11 +0.3
1,103,470 + MPMX19_03665 0.11 -2.1
1,103,470 + MPMX19_03665 0.11 -0.2
1,103,471 - MPMX19_03665 0.11 +0.2
1,103,471 - MPMX19_03665 0.11 +0.8
1,103,471 - MPMX19_03665 0.11 -0.1
1,103,471 - MPMX19_03665 0.11 +0.1
1,103,471 - MPMX19_03665 0.11 -0.9
1,103,471 - MPMX19_03665 0.11 -1.9
1,103,471 - MPMX19_03665 0.11 +0.1
1,103,471 - MPMX19_03665 0.11 +0.6
1,103,471 - MPMX19_03665 0.11 -0.3
1,103,471 - MPMX19_03665 0.11 -1.1
1,103,471 - MPMX19_03665 0.11 +0.8
1,103,471 - MPMX19_03665 0.11 -0.1
1,103,613 + MPMX19_03665 0.29 +0.2
1,103,741 - MPMX19_03665 0.44 -1.1
1,103,872 + MPMX19_03665 0.61 -0.3
1,103,872 + MPMX19_03665 0.61 -0.3
1,103,872 + MPMX19_03665 0.61 -2.3
1,103,872 + MPMX19_03665 0.61 +1.1
1,103,872 + MPMX19_03665 0.61 +0.5
1,103,872 + MPMX19_03665 0.61 -0.5
1,103,872 + MPMX19_03665 0.61 -1.2
1,103,873 - MPMX19_03665 0.61 -1.8
1,103,873 - MPMX19_03665 0.61 -0.1
1,103,913 + MPMX19_03665 0.66 -0.2
1,104,360 + MPMX19_03666 0.39 -0.5
1,104,360 + MPMX19_03666 0.39 +0.1
1,104,360 + MPMX19_03666 0.39 -0.1
1,104,426 + MPMX19_03666 0.54 -0.2
1,104,427 - MPMX19_03666 0.54 -0.2
1,104,427 - MPMX19_03666 0.54 -0.4
1,104,537 + MPMX19_03666 0.79 +0.8
1,104,537 + MPMX19_03666 0.79 -2.0
1,104,537 + MPMX19_03666 0.79 +0.4
1,104,537 + MPMX19_03666 0.79 -1.3
1,104,538 - MPMX19_03666 0.79 -1.4
1,104,538 - MPMX19_03666 0.79 -1.1
1,104,538 - MPMX19_03666 0.79 -0.7
1,104,538 - MPMX19_03666 0.79 +0.5
1,104,538 - MPMX19_03666 0.79 -1.8
1,104,538 - MPMX19_03666 0.79 -0.9
1,104,538 - MPMX19_03666 0.79 -2.1
1,105,076 + MPMX19_03667 0.62 +0.3
1,105,076 + MPMX19_03667 0.62 +0.2
1,105,076 + MPMX19_03667 0.62 +0.1
1,105,076 + MPMX19_03667 0.62 -1.2
1,105,076 + MPMX19_03667 0.62 +0.5
1,105,076 + MPMX19_03667 0.62 +0.1
1,105,076 + MPMX19_03667 0.62 -0.0
1,105,077 - MPMX19_03667 0.62 +0.2
1,105,077 - MPMX19_03667 0.62 -1.3
1,105,077 - MPMX19_03667 0.62 +0.9
1,105,077 - MPMX19_03667 0.62 -0.2
1,105,077 - MPMX19_03667 0.62 -1.2
1,105,077 - MPMX19_03667 0.62 +0.1
1,105,304 + +0.5
1,105,304 + -0.1
1,105,304 + -0.1
1,105,304 + -1.0
1,105,304 + -1.5
1,105,305 - +0.7
1,105,305 - -0.2
1,105,305 - -0.4
1,105,305 - -0.2
1,105,305 - -0.9
1,105,305 - -0.1
1,105,305 - -1.5
1,105,305 - -0.2
1,105,305 - +0.1
1,105,305 - -1.5
1,105,305 - +0.9
1,105,453 + MPMX19_03668 0.16 +0.0
1,105,453 + MPMX19_03668 0.16 -0.4
1,105,453 + MPMX19_03668 0.16 -0.5
1,105,453 + MPMX19_03668 0.16 -1.9
1,105,453 + MPMX19_03668 0.16 -0.6
1,105,453 + MPMX19_03668 0.16 -0.2
1,105,453 + MPMX19_03668 0.16 +0.6
1,105,453 + MPMX19_03668 0.16 -0.5
1,105,453 + MPMX19_03668 0.16 +0.0
1,105,453 + MPMX19_03668 0.16 -0.9
1,105,454 - MPMX19_03668 0.16 +0.8
1,105,454 - MPMX19_03668 0.16 +0.8
1,105,454 - MPMX19_03668 0.16 +0.1
1,105,454 - MPMX19_03668 0.16 +1.2
1,105,454 - MPMX19_03668 0.16 -0.8
1,105,454 - MPMX19_03668 0.16 +0.6
1,105,454 - MPMX19_03668 0.16 -0.8
1,105,454 - MPMX19_03668 0.16 +0.2
1,105,454 - MPMX19_03668 0.16 -0.1
1,105,492 + MPMX19_03668 0.21 -0.8
1,105,492 + MPMX19_03668 0.21 -0.1
1,105,493 - MPMX19_03668 0.21 +0.2

Or see this region's nucleotide sequence