Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03253

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03251 and MPMX19_03252 are separated by 268 nucleotidesMPMX19_03252 and MPMX19_03253 are separated by 2 nucleotidesMPMX19_03253 and MPMX19_03254 overlap by 8 nucleotides MPMX19_03251: MPMX19_03251 - hypothetical protein, at 592,079 to 592,546 _03251 MPMX19_03252: MPMX19_03252 - hypothetical protein, at 592,815 to 593,522 _03252 MPMX19_03253: MPMX19_03253 - 4-hydroxy-tetrahydrodipicolinate synthase, at 593,525 to 594,436 _03253 MPMX19_03254: MPMX19_03254 - NADP/NAD-dependent aldehyde dehydrogenase PuuC, at 594,429 to 595,946 _03254 Position (kb) 593 594 595Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 592.792 kb on - strandat 592.839 kb on + strandat 592.920 kb on + strand, within MPMX19_03252at 592.920 kb on + strand, within MPMX19_03252at 592.920 kb on + strand, within MPMX19_03252at 592.920 kb on + strand, within MPMX19_03252at 592.921 kb on - strand, within MPMX19_03252at 592.977 kb on + strand, within MPMX19_03252at 592.978 kb on - strand, within MPMX19_03252at 593.025 kb on + strand, within MPMX19_03252at 593.025 kb on + strand, within MPMX19_03252at 593.026 kb on - strand, within MPMX19_03252at 593.067 kb on + strand, within MPMX19_03252at 593.067 kb on + strand, within MPMX19_03252at 593.067 kb on + strand, within MPMX19_03252at 593.068 kb on - strand, within MPMX19_03252at 593.068 kb on - strand, within MPMX19_03252at 593.068 kb on - strand, within MPMX19_03252at 593.270 kb on - strand, within MPMX19_03252at 593.540 kb on - strandat 593.615 kb on + strandat 593.616 kb on - strandat 593.616 kb on - strandat 593.616 kb on - strandat 593.669 kb on + strand, within MPMX19_03253at 593.669 kb on + strand, within MPMX19_03253at 593.670 kb on - strand, within MPMX19_03253at 593.711 kb on + strand, within MPMX19_03253at 593.711 kb on + strand, within MPMX19_03253at 593.711 kb on + strand, within MPMX19_03253at 593.789 kb on + strand, within MPMX19_03253at 593.790 kb on - strand, within MPMX19_03253at 593.846 kb on + strand, within MPMX19_03253at 593.847 kb on - strand, within MPMX19_03253at 593.924 kb on + strand, within MPMX19_03253at 593.924 kb on + strand, within MPMX19_03253at 593.924 kb on + strand, within MPMX19_03253at 593.924 kb on + strand, within MPMX19_03253at 593.924 kb on + strand, within MPMX19_03253at 593.924 kb on + strand, within MPMX19_03253at 593.924 kb on + strand, within MPMX19_03253at 593.924 kb on + strand, within MPMX19_03253at 593.925 kb on - strand, within MPMX19_03253at 593.925 kb on - strand, within MPMX19_03253at 593.930 kb on + strand, within MPMX19_03253at 593.931 kb on - strand, within MPMX19_03253at 593.931 kb on - strand, within MPMX19_03253at 593.931 kb on - strand, within MPMX19_03253at 593.966 kb on + strand, within MPMX19_03253at 593.966 kb on + strand, within MPMX19_03253at 593.967 kb on - strand, within MPMX19_03253at 593.967 kb on - strand, within MPMX19_03253at 593.967 kb on - strand, within MPMX19_03253at 593.967 kb on - strand, within MPMX19_03253at 593.967 kb on - strand, within MPMX19_03253at 594.176 kb on + strand, within MPMX19_03253at 594.176 kb on + strand, within MPMX19_03253at 594.176 kb on + strand, within MPMX19_03253at 594.176 kb on + strand, within MPMX19_03253at 594.176 kb on + strand, within MPMX19_03253at 594.177 kb on - strand, within MPMX19_03253at 594.177 kb on - strand, within MPMX19_03253at 594.177 kb on - strand, within MPMX19_03253at 594.177 kb on - strand, within MPMX19_03253at 594.287 kb on + strand, within MPMX19_03253at 594.288 kb on - strand, within MPMX19_03253at 594.288 kb on - strand, within MPMX19_03253at 594.428 kb on + strandat 594.428 kb on + strandat 594.429 kb on - strandat 594.429 kb on - strandat 594.429 kb on - strandat 594.429 kb on - strandat 594.429 kb on - strandat 594.429 kb on - strandat 594.429 kb on - strandat 594.456 kb on + strandat 594.571 kb on + strandat 594.571 kb on + strandat 594.571 kb on + strandat 594.572 kb on - strandat 594.572 kb on - strandat 594.572 kb on - strandat 594.572 kb on - strandat 594.572 kb on - strandat 594.572 kb on - strandat 594.572 kb on - strandat 594.612 kb on + strand, within MPMX19_03254at 594.612 kb on + strand, within MPMX19_03254at 594.612 kb on + strand, within MPMX19_03254at 594.612 kb on + strand, within MPMX19_03254at 594.612 kb on + strand, within MPMX19_03254at 594.613 kb on - strand, within MPMX19_03254at 594.613 kb on - strand, within MPMX19_03254at 594.613 kb on - strand, within MPMX19_03254at 594.846 kb on + strand, within MPMX19_03254at 594.846 kb on + strand, within MPMX19_03254at 594.846 kb on + strand, within MPMX19_03254at 594.846 kb on + strand, within MPMX19_03254at 594.847 kb on - strand, within MPMX19_03254at 594.847 kb on - strand, within MPMX19_03254at 594.847 kb on - strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.133 kb on + strand, within MPMX19_03254at 595.134 kb on - strand, within MPMX19_03254at 595.134 kb on - strand, within MPMX19_03254at 595.134 kb on - strand, within MPMX19_03254at 595.134 kb on - strand, within MPMX19_03254at 595.134 kb on - strand, within MPMX19_03254at 595.134 kb on - strand, within MPMX19_03254at 595.134 kb on - strand, within MPMX19_03254at 595.134 kb on - strand, within MPMX19_03254

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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592,792 - -2.9
592,839 + -1.6
592,920 + MPMX19_03252 0.15 -0.8
592,920 + MPMX19_03252 0.15 -0.6
592,920 + MPMX19_03252 0.15 -0.9
592,920 + MPMX19_03252 0.15 -0.1
592,921 - MPMX19_03252 0.15 -1.2
592,977 + MPMX19_03252 0.23 +0.3
592,978 - MPMX19_03252 0.23 -1.2
593,025 + MPMX19_03252 0.30 -0.9
593,025 + MPMX19_03252 0.30 +1.5
593,026 - MPMX19_03252 0.30 -0.1
593,067 + MPMX19_03252 0.36 -1.3
593,067 + MPMX19_03252 0.36 -2.0
593,067 + MPMX19_03252 0.36 -1.3
593,068 - MPMX19_03252 0.36 +0.7
593,068 - MPMX19_03252 0.36 -0.1
593,068 - MPMX19_03252 0.36 -0.1
593,270 - MPMX19_03252 0.64 -1.8
593,540 - -0.5
593,615 + +1.2
593,616 - -0.6
593,616 - -2.3
593,616 - -1.1
593,669 + MPMX19_03253 0.16 +0.6
593,669 + MPMX19_03253 0.16 +0.4
593,670 - MPMX19_03253 0.16 +0.3
593,711 + MPMX19_03253 0.20 -0.3
593,711 + MPMX19_03253 0.20 -1.6
593,711 + MPMX19_03253 0.20 -0.1
593,789 + MPMX19_03253 0.29 -1.3
593,790 - MPMX19_03253 0.29 -0.3
593,846 + MPMX19_03253 0.35 -1.1
593,847 - MPMX19_03253 0.35 +0.9
593,924 + MPMX19_03253 0.44 -0.6
593,924 + MPMX19_03253 0.44 -0.1
593,924 + MPMX19_03253 0.44 -0.9
593,924 + MPMX19_03253 0.44 -1.5
593,924 + MPMX19_03253 0.44 -0.1
593,924 + MPMX19_03253 0.44 -1.6
593,924 + MPMX19_03253 0.44 -0.3
593,924 + MPMX19_03253 0.44 -0.1
593,925 - MPMX19_03253 0.44 -0.4
593,925 - MPMX19_03253 0.44 -0.5
593,930 + MPMX19_03253 0.44 +1.5
593,931 - MPMX19_03253 0.45 -1.1
593,931 - MPMX19_03253 0.45 -1.1
593,931 - MPMX19_03253 0.45 +0.3
593,966 + MPMX19_03253 0.48 -1.2
593,966 + MPMX19_03253 0.48 +0.2
593,967 - MPMX19_03253 0.48 -0.9
593,967 - MPMX19_03253 0.48 +0.7
593,967 - MPMX19_03253 0.48 -0.5
593,967 - MPMX19_03253 0.48 -1.4
593,967 - MPMX19_03253 0.48 -1.2
594,176 + MPMX19_03253 0.71 -0.8
594,176 + MPMX19_03253 0.71 -1.0
594,176 + MPMX19_03253 0.71 -0.6
594,176 + MPMX19_03253 0.71 -1.0
594,176 + MPMX19_03253 0.71 -1.1
594,177 - MPMX19_03253 0.71 +0.8
594,177 - MPMX19_03253 0.71 -0.3
594,177 - MPMX19_03253 0.71 -1.2
594,177 - MPMX19_03253 0.71 +0.2
594,287 + MPMX19_03253 0.84 -1.6
594,288 - MPMX19_03253 0.84 -0.5
594,288 - MPMX19_03253 0.84 -1.5
594,428 + -1.1
594,428 + +0.3
594,429 - +0.2
594,429 - -0.9
594,429 - -0.3
594,429 - +0.7
594,429 - +0.5
594,429 - +0.2
594,429 - -1.1
594,456 + -0.7
594,571 + -2.9
594,571 + +0.5
594,571 + -0.1
594,572 - -0.1
594,572 - +1.1
594,572 - -1.2
594,572 - +0.1
594,572 - -0.5
594,572 - -0.1
594,572 - -1.1
594,612 + MPMX19_03254 0.12 +0.0
594,612 + MPMX19_03254 0.12 +0.1
594,612 + MPMX19_03254 0.12 +0.4
594,612 + MPMX19_03254 0.12 -0.5
594,612 + MPMX19_03254 0.12 -0.2
594,613 - MPMX19_03254 0.12 +0.8
594,613 - MPMX19_03254 0.12 +0.1
594,613 - MPMX19_03254 0.12 -1.1
594,846 + MPMX19_03254 0.27 -1.3
594,846 + MPMX19_03254 0.27 +1.0
594,846 + MPMX19_03254 0.27 +1.1
594,846 + MPMX19_03254 0.27 +0.2
594,847 - MPMX19_03254 0.28 +1.0
594,847 - MPMX19_03254 0.28 -2.3
594,847 - MPMX19_03254 0.28 +0.4
595,133 + MPMX19_03254 0.46 -0.5
595,133 + MPMX19_03254 0.46 +2.5
595,133 + MPMX19_03254 0.46 -2.4
595,133 + MPMX19_03254 0.46 -2.1
595,133 + MPMX19_03254 0.46 -0.2
595,133 + MPMX19_03254 0.46 -1.6
595,133 + MPMX19_03254 0.46 +0.1
595,133 + MPMX19_03254 0.46 -0.9
595,133 + MPMX19_03254 0.46 -0.5
595,133 + MPMX19_03254 0.46 -1.1
595,133 + MPMX19_03254 0.46 +0.2
595,133 + MPMX19_03254 0.46 -0.1
595,133 + MPMX19_03254 0.46 -1.6
595,133 + MPMX19_03254 0.46 +0.2
595,133 + MPMX19_03254 0.46 -1.1
595,133 + MPMX19_03254 0.46 -1.6
595,134 - MPMX19_03254 0.46 -1.0
595,134 - MPMX19_03254 0.46 -0.1
595,134 - MPMX19_03254 0.46 -1.0
595,134 - MPMX19_03254 0.46 +0.1
595,134 - MPMX19_03254 0.46 -0.0
595,134 - MPMX19_03254 0.46 +0.6
595,134 - MPMX19_03254 0.46 -0.2
595,134 - MPMX19_03254 0.46 -1.9

Or see this region's nucleotide sequence