Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02822 and MPMX19_02823 are separated by 323 nucleotides MPMX19_02823 and MPMX19_02824 are separated by 26 nucleotides MPMX19_02824 and MPMX19_02825 are separated by 82 nucleotides
MPMX19_02822: MPMX19_02822 - HTH-type transcriptional regulator ArgP, at 61,883 to 62,890
_02822
MPMX19_02823: MPMX19_02823 - N-formyl-4-amino-5-aminomethyl-2- methylpyrimidine deformylase, at 63,214 to 64,536
_02823
MPMX19_02824: MPMX19_02824 - Decarboxylase NovR, at 64,563 to 65,354
_02824
MPMX19_02825: MPMX19_02825 - Oligopeptide-binding protein AppA, at 65,437 to 67,104
_02825
Position (kb) 63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 62.337 kb on + strand, within MPMX19_02822 at 62.337 kb on + strand, within MPMX19_02822 at 62.337 kb on + strand, within MPMX19_02822 at 62.338 kb on - strand, within MPMX19_02822 at 62.338 kb on - strand, within MPMX19_02822 at 62.338 kb on - strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.490 kb on + strand, within MPMX19_02822 at 62.490 kb on + strand, within MPMX19_02822 at 62.491 kb on - strand, within MPMX19_02822 at 62.491 kb on - strand, within MPMX19_02822 at 62.491 kb on - strand, within MPMX19_02822 at 62.646 kb on + strand, within MPMX19_02822 at 62.646 kb on + strand, within MPMX19_02822 at 62.646 kb on + strand, within MPMX19_02822 at 62.647 kb on - strand, within MPMX19_02822 at 62.647 kb on - strand, within MPMX19_02822 at 62.647 kb on - strand, within MPMX19_02822 at 62.647 kb on - strand, within MPMX19_02822 at 62.950 kb on - strand at 62.950 kb on - strand at 62.950 kb on - strand at 63.016 kb on + strand at 63.044 kb on + strand at 63.091 kb on + strand at 63.091 kb on + strand at 63.091 kb on + strand at 63.092 kb on - strand at 63.102 kb on + strand at 63.103 kb on - strand at 63.210 kb on + strand at 63.210 kb on + strand at 63.211 kb on - strand at 63.225 kb on + strand at 63.225 kb on + strand at 63.225 kb on + strand at 63.226 kb on - strand at 63.490 kb on + strand, within MPMX19_02823 at 63.490 kb on + strand, within MPMX19_02823 at 63.491 kb on - strand, within MPMX19_02823 at 63.567 kb on + strand, within MPMX19_02823 at 63.568 kb on - strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.688 kb on + strand, within MPMX19_02823 at 63.688 kb on + strand, within MPMX19_02823 at 63.689 kb on - strand, within MPMX19_02823 at 63.745 kb on + strand, within MPMX19_02823 at 63.745 kb on + strand, within MPMX19_02823 at 63.745 kb on + strand, within MPMX19_02823 at 63.745 kb on + strand, within MPMX19_02823 at 63.745 kb on + strand, within MPMX19_02823 at 63.746 kb on - strand, within MPMX19_02823 at 63.746 kb on - strand, within MPMX19_02823 at 63.746 kb on - strand, within MPMX19_02823 at 63.746 kb on - strand, within MPMX19_02823 at 63.961 kb on + strand, within MPMX19_02823 at 63.961 kb on + strand, within MPMX19_02823 at 63.962 kb on - strand, within MPMX19_02823 at 63.962 kb on - strand, within MPMX19_02823 at 63.962 kb on - strand, within MPMX19_02823 at 64.390 kb on + strand, within MPMX19_02823 at 64.390 kb on + strand, within MPMX19_02823 at 64.391 kb on - strand, within MPMX19_02823 at 64.391 kb on - strand, within MPMX19_02823 at 64.391 kb on - strand, within MPMX19_02823 at 64.391 kb on - strand, within MPMX19_02823 at 64.391 kb on - strand, within MPMX19_02823 at 64.414 kb on + strand at 64.415 kb on - strand at 64.542 kb on + strand at 64.542 kb on + strand at 64.543 kb on - strand at 64.620 kb on + strand at 64.620 kb on + strand at 64.620 kb on + strand at 64.620 kb on + strand at 64.620 kb on + strand at 64.620 kb on + strand at 64.621 kb on - strand at 64.621 kb on - strand at 64.665 kb on + strand, within MPMX19_02824 at 64.665 kb on + strand, within MPMX19_02824 at 64.665 kb on + strand, within MPMX19_02824 at 64.665 kb on + strand, within MPMX19_02824 at 64.666 kb on - strand, within MPMX19_02824 at 64.666 kb on - strand, within MPMX19_02824 at 64.666 kb on - strand, within MPMX19_02824 at 64.666 kb on - strand, within MPMX19_02824 at 64.666 kb on - strand, within MPMX19_02824 at 64.666 kb on - strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.704 kb on + strand, within MPMX19_02824 at 64.705 kb on - strand, within MPMX19_02824 at 64.705 kb on - strand, within MPMX19_02824 at 64.705 kb on - strand, within MPMX19_02824 at 64.705 kb on - strand, within MPMX19_02824 at 64.705 kb on - strand, within MPMX19_02824 at 64.705 kb on - strand, within MPMX19_02824 at 64.705 kb on - strand, within MPMX19_02824 at 64.705 kb on - strand, within MPMX19_02824 at 64.705 kb on - strand, within MPMX19_02824 at 64.705 kb on - strand, within MPMX19_02824 at 64.762 kb on - strand, within MPMX19_02824 at 65.001 kb on + strand, within MPMX19_02824 at 65.001 kb on + strand, within MPMX19_02824 at 65.001 kb on + strand, within MPMX19_02824 at 65.002 kb on - strand, within MPMX19_02824 at 65.002 kb on - strand, within MPMX19_02824 at 65.002 kb on - strand, within MPMX19_02824 at 65.002 kb on - strand, within MPMX19_02824 at 65.002 kb on - strand, within MPMX19_02824 at 65.002 kb on - strand, within MPMX19_02824 at 65.016 kb on + strand, within MPMX19_02824 at 65.016 kb on + strand, within MPMX19_02824 at 65.016 kb on + strand, within MPMX19_02824 at 65.017 kb on - strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.025 kb on + strand, within MPMX19_02824 at 65.026 kb on - strand, within MPMX19_02824 at 65.026 kb on - strand, within MPMX19_02824 at 65.026 kb on - strand, within MPMX19_02824 at 65.026 kb on - strand, within MPMX19_02824 at 65.026 kb on - strand, within MPMX19_02824 at 65.026 kb on - strand, within MPMX19_02824 at 65.026 kb on - strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.160 kb on + strand, within MPMX19_02824 at 65.161 kb on - strand, within MPMX19_02824 at 65.161 kb on - strand, within MPMX19_02824 at 65.161 kb on - strand, within MPMX19_02824 at 65.161 kb on - strand, within MPMX19_02824 at 65.161 kb on - strand, within MPMX19_02824 at 65.161 kb on - strand, within MPMX19_02824 at 65.161 kb on - strand, within MPMX19_02824 at 65.161 kb on - strand, within MPMX19_02824 at 65.161 kb on - strand, within MPMX19_02824 at 65.161 kb on - strand, within MPMX19_02824 at 65.163 kb on + strand, within MPMX19_02824 at 65.163 kb on + strand, within MPMX19_02824 at 65.163 kb on + strand, within MPMX19_02824 at 65.163 kb on + strand, within MPMX19_02824 at 65.163 kb on + strand, within MPMX19_02824 at 65.163 kb on + strand, within MPMX19_02824 at 65.163 kb on + strand, within MPMX19_02824 at 65.163 kb on + strand, within MPMX19_02824 at 65.164 kb on - strand, within MPMX19_02824 at 65.164 kb on - strand, within MPMX19_02824 at 65.164 kb on - strand, within MPMX19_02824 at 65.164 kb on - strand, within MPMX19_02824 at 65.164 kb on - strand, within MPMX19_02824 at 65.164 kb on - strand, within MPMX19_02824 at 65.223 kb on + strand, within MPMX19_02824 at 65.224 kb on - strand, within MPMX19_02824 at 65.224 kb on - strand, within MPMX19_02824 at 65.224 kb on - strand, within MPMX19_02824 at 65.224 kb on - strand, within MPMX19_02824 at 65.262 kb on + strand, within MPMX19_02824 at 65.262 kb on + strand, within MPMX19_02824 at 65.262 kb on + strand, within MPMX19_02824 at 65.262 kb on + strand, within MPMX19_02824 at 65.262 kb on + strand, within MPMX19_02824 at 65.262 kb on + strand, within MPMX19_02824 at 65.262 kb on + strand, within MPMX19_02824 at 65.263 kb on - strand, within MPMX19_02824 at 65.263 kb on - strand, within MPMX19_02824 at 65.275 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 62,337 + MPMX19_02822 0.45 +0.7 62,337 + MPMX19_02822 0.45 +0.3 62,337 + MPMX19_02822 0.45 +0.4 62,338 - MPMX19_02822 0.45 -0.8 62,338 - MPMX19_02822 0.45 +0.1 62,338 - MPMX19_02822 0.45 -0.8 62,346 + MPMX19_02822 0.46 -1.8 62,346 + MPMX19_02822 0.46 -1.1 62,346 + MPMX19_02822 0.46 +0.9 62,346 + MPMX19_02822 0.46 -2.1 62,346 + MPMX19_02822 0.46 +0.9 62,346 + MPMX19_02822 0.46 -0.0 62,346 + MPMX19_02822 0.46 +0.6 62,346 + MPMX19_02822 0.46 +0.2 62,346 + MPMX19_02822 0.46 +1.6 62,346 + MPMX19_02822 0.46 +1.0 62,346 + MPMX19_02822 0.46 +0.6 62,346 + MPMX19_02822 0.46 -1.1 62,347 - MPMX19_02822 0.46 -1.0 62,347 - MPMX19_02822 0.46 -1.8 62,347 - MPMX19_02822 0.46 -0.0 62,347 - MPMX19_02822 0.46 -0.4 62,347 - MPMX19_02822 0.46 -1.6 62,347 - MPMX19_02822 0.46 -0.2 62,347 - MPMX19_02822 0.46 -0.8 62,490 + MPMX19_02822 0.60 +0.6 62,490 + MPMX19_02822 0.60 -0.7 62,491 - MPMX19_02822 0.60 -0.1 62,491 - MPMX19_02822 0.60 -1.0 62,491 - MPMX19_02822 0.60 -1.2 62,646 + MPMX19_02822 0.76 -0.3 62,646 + MPMX19_02822 0.76 +0.4 62,646 + MPMX19_02822 0.76 +0.8 62,647 - MPMX19_02822 0.76 -1.9 62,647 - MPMX19_02822 0.76 +0.8 62,647 - MPMX19_02822 0.76 -0.3 62,647 - MPMX19_02822 0.76 -0.8 62,950 - -0.2 62,950 - -0.3 62,950 - -1.2 63,016 + -0.6 63,044 + +0.1 63,091 + -0.0 63,091 + -0.8 63,091 + -0.4 63,092 - -1.6 63,102 + -1.1 63,103 - -1.4 63,210 + -1.2 63,210 + -1.5 63,211 - -0.1 63,225 + -0.3 63,225 + -0.9 63,225 + -0.6 63,226 - +0.4 63,490 + MPMX19_02823 0.21 +0.2 63,490 + MPMX19_02823 0.21 -0.3 63,491 - MPMX19_02823 0.21 -0.5 63,567 + MPMX19_02823 0.27 -0.0 63,568 - MPMX19_02823 0.27 -1.3 63,646 + MPMX19_02823 0.33 -2.3 63,646 + MPMX19_02823 0.33 +0.4 63,646 + MPMX19_02823 0.33 -0.6 63,646 + MPMX19_02823 0.33 +0.3 63,646 + MPMX19_02823 0.33 +0.2 63,646 + MPMX19_02823 0.33 -0.0 63,647 - MPMX19_02823 0.33 -0.7 63,647 - MPMX19_02823 0.33 +0.2 63,647 - MPMX19_02823 0.33 -0.4 63,647 - MPMX19_02823 0.33 -1.0 63,647 - MPMX19_02823 0.33 -1.0 63,647 - MPMX19_02823 0.33 -0.6 63,688 + MPMX19_02823 0.36 +0.9 63,688 + MPMX19_02823 0.36 -0.9 63,689 - MPMX19_02823 0.36 -0.5 63,745 + MPMX19_02823 0.40 -0.1 63,745 + MPMX19_02823 0.40 -0.0 63,745 + MPMX19_02823 0.40 -1.1 63,745 + MPMX19_02823 0.40 -0.3 63,745 + MPMX19_02823 0.40 -0.3 63,746 - MPMX19_02823 0.40 -0.8 63,746 - MPMX19_02823 0.40 -0.6 63,746 - MPMX19_02823 0.40 +0.1 63,746 - MPMX19_02823 0.40 -0.3 63,961 + MPMX19_02823 0.56 -1.2 63,961 + MPMX19_02823 0.56 +0.1 63,962 - MPMX19_02823 0.57 +0.4 63,962 - MPMX19_02823 0.57 -0.2 63,962 - MPMX19_02823 0.57 +0.3 64,390 + MPMX19_02823 0.89 -2.1 64,390 + MPMX19_02823 0.89 -1.0 64,391 - MPMX19_02823 0.89 +0.2 64,391 - MPMX19_02823 0.89 +0.2 64,391 - MPMX19_02823 0.89 -0.0 64,391 - MPMX19_02823 0.89 -0.0 64,391 - MPMX19_02823 0.89 -1.4 64,414 + -0.4 64,415 - -0.7 64,542 + -0.1 64,542 + -0.0 64,543 - +0.6 64,620 + -0.0 64,620 + +0.4 64,620 + +0.2 64,620 + -0.2 64,620 + +1.6 64,620 + -1.2 64,621 - -0.3 64,621 - -0.1 64,665 + MPMX19_02824 0.13 +0.2 64,665 + MPMX19_02824 0.13 -0.8 64,665 + MPMX19_02824 0.13 -0.6 64,665 + MPMX19_02824 0.13 -1.2 64,666 - MPMX19_02824 0.13 +0.1 64,666 - MPMX19_02824 0.13 +0.7 64,666 - MPMX19_02824 0.13 -0.6 64,666 - MPMX19_02824 0.13 -1.6 64,666 - MPMX19_02824 0.13 -0.3 64,666 - MPMX19_02824 0.13 -0.7 64,704 + MPMX19_02824 0.18 -1.7 64,704 + MPMX19_02824 0.18 -1.6 64,704 + MPMX19_02824 0.18 -0.8 64,704 + MPMX19_02824 0.18 -0.6 64,704 + MPMX19_02824 0.18 +0.4 64,704 + MPMX19_02824 0.18 -1.8 64,704 + MPMX19_02824 0.18 -0.3 64,704 + MPMX19_02824 0.18 -0.6 64,704 + MPMX19_02824 0.18 -0.0 64,704 + MPMX19_02824 0.18 -0.7 64,704 + MPMX19_02824 0.18 -0.3 64,704 + MPMX19_02824 0.18 +0.2 64,704 + MPMX19_02824 0.18 -0.6 64,705 - MPMX19_02824 0.18 +0.2 64,705 - MPMX19_02824 0.18 -0.1 64,705 - MPMX19_02824 0.18 +0.6 64,705 - MPMX19_02824 0.18 -0.4 64,705 - MPMX19_02824 0.18 -1.6 64,705 - MPMX19_02824 0.18 -1.2 64,705 - MPMX19_02824 0.18 -0.7 64,705 - MPMX19_02824 0.18 +1.0 64,705 - MPMX19_02824 0.18 +0.7 64,705 - MPMX19_02824 0.18 +0.8 64,762 - MPMX19_02824 0.25 -0.3 65,001 + MPMX19_02824 0.55 -1.8 65,001 + MPMX19_02824 0.55 -0.5 65,001 + MPMX19_02824 0.55 -1.6 65,002 - MPMX19_02824 0.55 -2.8 65,002 - MPMX19_02824 0.55 +0.6 65,002 - MPMX19_02824 0.55 -0.4 65,002 - MPMX19_02824 0.55 -0.8 65,002 - MPMX19_02824 0.55 -0.5 65,002 - MPMX19_02824 0.55 +0.3 65,016 + MPMX19_02824 0.57 -0.6 65,016 + MPMX19_02824 0.57 -0.6 65,016 + MPMX19_02824 0.57 -0.2 65,017 - MPMX19_02824 0.57 +0.4 65,025 + MPMX19_02824 0.58 +0.7 65,025 + MPMX19_02824 0.58 -1.2 65,025 + MPMX19_02824 0.58 -1.0 65,025 + MPMX19_02824 0.58 -0.1 65,025 + MPMX19_02824 0.58 -0.9 65,025 + MPMX19_02824 0.58 -0.3 65,025 + MPMX19_02824 0.58 +0.2 65,025 + MPMX19_02824 0.58 -0.7 65,025 + MPMX19_02824 0.58 -0.2 65,025 + MPMX19_02824 0.58 -0.1 65,025 + MPMX19_02824 0.58 -0.5 65,026 - MPMX19_02824 0.58 -0.4 65,026 - MPMX19_02824 0.58 -1.1 65,026 - MPMX19_02824 0.58 -0.8 65,026 - MPMX19_02824 0.58 -1.4 65,026 - MPMX19_02824 0.58 -0.6 65,026 - MPMX19_02824 0.58 -1.2 65,026 - MPMX19_02824 0.58 -1.0 65,160 + MPMX19_02824 0.75 -0.0 65,160 + MPMX19_02824 0.75 -0.2 65,160 + MPMX19_02824 0.75 -1.1 65,160 + MPMX19_02824 0.75 -0.8 65,160 + MPMX19_02824 0.75 -0.2 65,160 + MPMX19_02824 0.75 -0.3 65,160 + MPMX19_02824 0.75 -0.7 65,160 + MPMX19_02824 0.75 -1.0 65,160 + MPMX19_02824 0.75 -0.8 65,160 + MPMX19_02824 0.75 -0.0 65,160 + MPMX19_02824 0.75 -0.9 65,161 - MPMX19_02824 0.76 -0.7 65,161 - MPMX19_02824 0.76 -0.4 65,161 - MPMX19_02824 0.76 -0.2 65,161 - MPMX19_02824 0.76 +0.1 65,161 - MPMX19_02824 0.76 -0.8 65,161 - MPMX19_02824 0.76 +0.1 65,161 - MPMX19_02824 0.76 -0.7 65,161 - MPMX19_02824 0.76 -1.2 65,161 - MPMX19_02824 0.76 +0.7 65,161 - MPMX19_02824 0.76 -2.2 65,163 + MPMX19_02824 0.76 +0.1 65,163 + MPMX19_02824 0.76 +1.0 65,163 + MPMX19_02824 0.76 +0.1 65,163 + MPMX19_02824 0.76 -0.3 65,163 + MPMX19_02824 0.76 -0.4 65,163 + MPMX19_02824 0.76 +0.1 65,163 + MPMX19_02824 0.76 -0.4 65,163 + MPMX19_02824 0.76 +0.1 65,164 - MPMX19_02824 0.76 +0.8 65,164 - MPMX19_02824 0.76 +0.8 65,164 - MPMX19_02824 0.76 +0.6 65,164 - MPMX19_02824 0.76 +0.6 65,164 - MPMX19_02824 0.76 +0.8 65,164 - MPMX19_02824 0.76 -1.2 65,223 + MPMX19_02824 0.83 +0.2 65,224 - MPMX19_02824 0.83 -0.4 65,224 - MPMX19_02824 0.83 +1.3 65,224 - MPMX19_02824 0.83 +0.4 65,224 - MPMX19_02824 0.83 -0.3 65,262 + MPMX19_02824 0.88 -0.3 65,262 + MPMX19_02824 0.88 +1.2 65,262 + MPMX19_02824 0.88 -1.6 65,262 + MPMX19_02824 0.88 +0.7 65,262 + MPMX19_02824 0.88 -0.9 65,262 + MPMX19_02824 0.88 +0.4 65,262 + MPMX19_02824 0.88 -0.0 65,263 - MPMX19_02824 0.88 -2.2 65,263 - MPMX19_02824 0.88 +0.4 65,275 - -0.4
Or see this region's nucleotide sequence