Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02504

Experiment: NL-CCM; ambient oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; ambient oxygen
2,620,166	+		MPMX19_02502	0.48	-1.0
2,620,166	+		MPMX19_02502	0.48	-0.3
2,620,166	+		MPMX19_02502	0.48	+1.7
2,620,166	+		MPMX19_02502	0.48	-0.6
2,620,167	-		MPMX19_02502	0.48	-1.1
2,620,167	-		MPMX19_02502	0.48	-0.5
2,620,167	-		MPMX19_02502	0.48	-0.3
2,620,167	-		MPMX19_02502	0.48	-0.6
2,620,167	-		MPMX19_02502	0.48	+0.2
2,620,167	-		MPMX19_02502	0.48	-1.3
2,620,185	-		MPMX19_02502	0.51	+1.7
2,620,185	-		MPMX19_02502	0.51	+0.7
2,620,185	-		MPMX19_02502	0.51	+1.5
2,620,271	+		MPMX19_02502	0.65	+0.8
2,620,272	-		MPMX19_02502	0.66	+0.7
2,620,362	+		MPMX19_02502	0.81	-0.9
2,620,362	+		MPMX19_02502	0.81	+1.5
2,620,363	-		MPMX19_02502	0.81	+0.9
2,620,363	-		MPMX19_02502	0.81	+0.9
2,620,363	-		MPMX19_02502	0.81	-0.3
2,620,989	+				-1.1
2,620,989	+				-0.1
2,620,989	+				-0.9
2,620,989	+				-1.7
2,620,989	+				-0.9
2,620,989	+				+0.3
2,620,989	+				-0.2
2,620,989	+				-0.8
2,620,989	+				-0.6
2,620,990	-				-0.5
2,620,990	-				+0.6
2,620,990	-				-1.9
2,620,990	-				+1.0
2,620,990	-				-0.3
2,620,990	-				-2.5
2,620,990	-				-0.2
2,620,990	-				-0.0
2,620,990	-				+1.3
2,620,990	-				+0.1
2,620,990	-				-0.9
2,620,990	-				-0.1
2,620,990	-				+0.1
2,620,998	+				+0.5
2,620,998	+				-0.7
2,620,998	+				-0.8
2,620,998	+				-0.3
2,620,998	+				-0.4
2,620,998	+				-0.9
2,620,998	+				+1.0
2,620,998	+				-1.4
2,620,998	+				+0.7
2,620,998	+				-0.5
2,620,998	+				-1.2
2,620,998	+				+0.1
2,620,998	+				-0.7
2,620,998	+				-1.2
2,620,998	+				-1.4
2,620,998	+				+0.4
2,620,998	+				+1.2
2,620,998	+				-1.3
2,620,998	+				-0.6
2,620,998	+				-0.5
2,620,998	+				+0.1
2,620,998	+				-0.9
2,620,998	+				+0.6
2,620,998	+				+0.2
2,620,998	+				-0.4
2,620,998	+				+1.5
2,620,998	+				-0.1
2,620,999	-				-1.1
2,620,999	-				+0.2
2,620,999	-				-1.6
2,620,999	-				-1.9
2,620,999	-				-0.1
2,620,999	-				+1.5
2,620,999	-				-1.0
2,620,999	-				+0.1
2,620,999	-				-0.3
2,620,999	-				+1.0
2,620,999	-				+0.3
2,620,999	-				+0.3
2,620,999	-				-1.6
2,620,999	-				+2.1
2,620,999	-				-0.2
2,620,999	-				+0.1
2,620,999	-				-0.7
2,620,999	-				-0.2
2,620,999	-				+0.3
2,620,999	-				+1.5
2,620,999	-				-1.8
2,620,999	-				-0.9
2,620,999	-				-0.5
2,621,002	+				+0.3
2,621,002	+				-0.6
2,621,002	+				-0.2
2,621,002	+				+0.7
2,621,002	+				-0.3
2,621,002	+				+0.9
2,621,002	+				-0.3
2,621,002	+				-1.8
2,621,002	+				-1.0
2,621,002	+				+0.8
2,621,002	+				-0.5
2,621,002	+				+0.1
2,621,002	+				-1.0
2,621,002	+				+0.8
2,621,002	+				-0.3
2,621,002	+				-0.9
2,621,002	+				+0.0
2,621,002	+				+0.1
2,621,002	+				-0.4
2,621,003	-				-1.3
2,621,003	-				-1.0
2,621,003	-				-0.3
2,621,003	-				+0.3
2,621,003	-				+0.3
2,621,003	-				+0.5
2,621,003	-				-1.2
2,621,003	-				+0.1
2,621,041	+				-0.9
2,621,041	+				-0.6
2,621,042	-				-2.5
2,621,042	-				-1.1
2,621,042	-				-1.1
2,621,060	+				+0.5
2,622,048	+		MPMX19_02504	0.41	-1.1
2,622,048	+		MPMX19_02504	0.41	-1.8
2,622,048	+		MPMX19_02504	0.41	+0.4
2,622,048	+		MPMX19_02504	0.41	-1.6
2,622,049	-		MPMX19_02504	0.41	+0.0
2,622,049	-		MPMX19_02504	0.41	-0.6
2,622,049	-		MPMX19_02504	0.41	-0.0
2,622,049	-		MPMX19_02504	0.41	-1.1
2,622,049	-		MPMX19_02504	0.41	+0.5
2,622,049	-		MPMX19_02504	0.41	-1.1
2,622,049	-		MPMX19_02504	0.41	-1.8
2,622,049	-		MPMX19_02504	0.41	-1.1
2,622,213	+		MPMX19_02504	0.48	-0.6
2,622,214	-		MPMX19_02504	0.48	-1.5
2,622,214	-		MPMX19_02504	0.48	+0.4
2,622,214	-		MPMX19_02504	0.48	-1.0
2,622,252	+		MPMX19_02504	0.49	+0.5
2,622,252	+		MPMX19_02504	0.49	+0.1
2,622,252	+		MPMX19_02504	0.49	+1.6
2,622,252	+		MPMX19_02504	0.49	-1.8
2,622,252	+		MPMX19_02504	0.49	-0.6
2,622,253	-		MPMX19_02504	0.49	-0.0
2,622,253	-		MPMX19_02504	0.49	-1.0
2,622,253	-		MPMX19_02504	0.49	-0.1
2,622,253	-		MPMX19_02504	0.49	-0.7
2,622,253	-		MPMX19_02504	0.49	-0.5
2,622,446	+		MPMX19_02504	0.58	-1.5
2,622,447	-		MPMX19_02504	0.58	-0.6
2,622,474	+		MPMX19_02504	0.59	-2.2
2,622,475	-		MPMX19_02504	0.59	+0.9
2,622,501	+		MPMX19_02504	0.60	-1.8
2,622,501	+		MPMX19_02504	0.60	+0.3
2,622,501	+		MPMX19_02504	0.60	-0.7
2,622,501	+		MPMX19_02504	0.60	-1.6
2,622,501	+		MPMX19_02504	0.60	-0.4
2,622,501	+		MPMX19_02504	0.60	-2.0
2,622,502	-		MPMX19_02504	0.60	-0.3
2,622,502	-		MPMX19_02504	0.60	-0.2
2,622,502	-		MPMX19_02504	0.60	-0.9
2,622,502	-		MPMX19_02504	0.60	-1.9
2,622,502	-		MPMX19_02504	0.60	-0.1
2,622,502	-		MPMX19_02504	0.60	-1.5
2,622,522	+		MPMX19_02504	0.61	-1.6
2,622,529	-		MPMX19_02504	0.61	+0.6
2,622,564	+		MPMX19_02504	0.63	-1.8
2,622,564	+		MPMX19_02504	0.63	+0.2
2,622,564	+		MPMX19_02504	0.63	-2.5
2,622,564	+		MPMX19_02504	0.63	-0.2
2,622,564	+		MPMX19_02504	0.63	+0.9
2,622,564	+		MPMX19_02504	0.63	-1.5
2,622,564	+		MPMX19_02504	0.63	+0.1
2,622,564	+		MPMX19_02504	0.63	-0.3
2,622,564	+		MPMX19_02504	0.63	-1.7
2,622,564	+		MPMX19_02504	0.63	+1.2
2,622,565	-		MPMX19_02504	0.63	-1.3
2,622,565	-		MPMX19_02504	0.63	-1.8
2,622,565	-		MPMX19_02504	0.63	-0.0
2,622,565	-		MPMX19_02504	0.63	+0.1
2,622,565	-		MPMX19_02504	0.63	-1.3
2,622,565	-		MPMX19_02504	0.63	-1.5
2,622,565	-		MPMX19_02504	0.63	+0.7
2,622,565	-		MPMX19_02504	0.63	-1.1
2,622,565	-		MPMX19_02504	0.63	-0.2
2,622,738	+		MPMX19_02504	0.70	-1.6
2,623,547	+				-0.6
2,623,547	+				+0.6
2,623,547	+				-0.4
2,623,547	+				-1.0
2,623,547	+				-0.4
2,623,547	+				-0.8
2,623,547	+				-0.7
2,623,547	+				-0.2
2,623,548	-				-2.1
2,623,548	-				-1.3
2,623,548	-				-0.1
2,623,548	-				+0.0
2,623,548	-				-1.3
2,623,548	-				+0.2
2,623,548	-				-1.6
2,623,548	-				-0.9
2,623,567	+				-0.5
2,623,567	+				-0.8
2,623,567	+				-0.6
2,623,567	+				-1.1
2,623,567	+				-0.9
2,623,567	+				-1.6
2,623,567	+				+0.4
2,623,567	+				-0.7
2,623,567	+				-0.5
2,623,567	+				-0.0
2,623,567	+				+0.5
2,623,567	+				+0.0
2,623,567	+				-0.6
2,623,567	+				+0.0
2,623,567	+				+0.6
2,623,567	+				-1.2
2,623,567	+				-0.6
2,623,567	+				-0.3
2,623,567	+				-0.3
2,623,567	+				+0.4
2,623,568	-				-1.9
2,623,568	-				-1.8
2,623,568	-				-1.3
2,623,568	-				-1.2
2,623,568	-				-0.2
2,623,568	-				-1.5
2,623,568	-				-0.3
2,623,568	-				+1.5
2,623,568	-				-1.2
2,623,568	-				-1.6
2,623,568	-				-0.0
2,623,568	-				+1.1
2,623,568	-				+0.3
2,623,568	-				+0.7
2,623,568	-				-0.5
2,623,568	-				-0.9
2,623,568	-				-0.1
2,623,568	-				-0.1
2,623,568	-				-0.1
2,623,568	-				+0.0
2,623,568	-				-0.0
2,623,568	-				-0.7
2,623,568	-				+0.2
2,623,613	+				-1.4
2,623,613	+				+0.2
2,623,614	-				-0.2
2,623,663	+				+0.3
2,623,663	+				-0.1
2,623,663	+				-0.2
2,623,663	+				-1.5
2,623,664	-				-0.1
2,623,664	-				-0.8
2,623,664	-				-0.6
2,623,664	-				+0.8
2,623,664	-				+1.1
2,623,664	-				+0.4
2,623,664	-				-1.5
2,623,664	-				-0.3
2,623,731	+				-0.1
2,623,731	+				-0.8
2,623,732	-				-0.9
2,623,732	-				-1.6
2,624,062	+		MPMX19_02505	0.52	+1.4
2,624,062	+		MPMX19_02505	0.52	+0.3
2,624,063	-		MPMX19_02505	0.53	-2.3
2,624,063	-		MPMX19_02505	0.53	+1.0
2,624,161	+		MPMX19_02505	0.66	-1.5
2,624,161	+		MPMX19_02505	0.66	-2.0
2,624,161	+		MPMX19_02505	0.66	+0.0
2,624,161	+		MPMX19_02505	0.66	-1.2
2,624,161	+		MPMX19_02505	0.66	-1.0
2,624,161	+		MPMX19_02505	0.66	+1.1
2,624,161	+		MPMX19_02505	0.66	+1.4
2,624,161	+		MPMX19_02505	0.66	+0.5
2,624,162	-		MPMX19_02505	0.66	+0.5
2,624,162	-		MPMX19_02505	0.66	-0.1
2,624,162	-		MPMX19_02505	0.66	-0.3
2,624,162	-		MPMX19_02505	0.66	-0.0
2,624,162	-		MPMX19_02505	0.66	-0.3
2,624,162	-		MPMX19_02505	0.66	+0.5
2,624,162	-		MPMX19_02505	0.66	-0.2
2,624,162	-		MPMX19_02505	0.66	-0.4
2,624,162	-		MPMX19_02505	0.66	+1.2
2,624,162	-		MPMX19_02505	0.66	-1.5
2,624,162	-		MPMX19_02505	0.66	+0.8
2,624,162	-		MPMX19_02505	0.66	-1.5
2,624,162	-		MPMX19_02505	0.66	+0.6
2,624,284	+		MPMX19_02505	0.83	-0.7
2,624,284	+		MPMX19_02505	0.83	+0.1
2,624,284	+		MPMX19_02505	0.83	+0.7
2,624,284	+		MPMX19_02505	0.83	-0.6
2,624,284	+		MPMX19_02505	0.83	-1.1
2,624,284	+		MPMX19_02505	0.83	+1.1
2,624,284	+		MPMX19_02505	0.83	+0.4
2,624,284	+		MPMX19_02505	0.83	-1.4
2,624,284	+		MPMX19_02505	0.83	+0.5
2,624,284	+		MPMX19_02505	0.83	-0.9
2,624,284	+		MPMX19_02505	0.83	-1.5
2,624,284	+		MPMX19_02505	0.83	-0.3
2,624,284	+		MPMX19_02505	0.83	-0.2
2,624,284	+		MPMX19_02505	0.83	-2.1
2,624,284	+		MPMX19_02505	0.83	-1.1
2,624,284	+		MPMX19_02505	0.83	-0.1
2,624,284	+		MPMX19_02505	0.83	+0.3
2,624,285	-		MPMX19_02505	0.83	+0.5
2,624,285	-		MPMX19_02505	0.83	-0.6
2,624,285	-		MPMX19_02505	0.83	-0.5
2,624,285	-		MPMX19_02505	0.83	+0.4
2,624,285	-		MPMX19_02505	0.83	+0.4
2,624,285	-		MPMX19_02505	0.83	+0.1
2,624,285	-		MPMX19_02505	0.83	+0.0
2,624,285	-		MPMX19_02505	0.83	-0.9
2,624,285	-		MPMX19_02505	0.83	-0.9
2,624,285	-		MPMX19_02505	0.83	-1.2
2,624,285	-		MPMX19_02505	0.83	-0.8
2,624,285	-		MPMX19_02505	0.83	+0.7
2,624,285	-		MPMX19_02505	0.83	-0.9
2,624,285	-		MPMX19_02505	0.83	+0.4
2,624,285	-		MPMX19_02505	0.83	-2.0
2,624,347	+				-0.1
2,624,347	+				-1.4
2,624,347	+				-0.7
2,624,348	-				+1.0
2,624,348	-				+0.7
2,624,348	-				-2.3
2,624,348	-				-0.9
2,624,348	-				-0.6
2,624,366	-				+0.0
2,624,401	+				-1.8
2,624,401	+				-0.2
2,624,401	+				+0.2
2,624,402	-				-0.6
2,624,402	-				+0.3