Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01652

Experiment: NL-CCM; ambient oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_01650 and MPMX19_01651 are separated by 128 nucleotidesMPMX19_01651 and MPMX19_01652 are separated by 59 nucleotidesMPMX19_01652 and MPMX19_01653 are separated by 346 nucleotides MPMX19_01650: MPMX19_01650 - hypothetical protein, at 1,734,305 to 1,734,571 _01650 MPMX19_01651: MPMX19_01651 - hypothetical protein, at 1,734,700 to 1,735,155 _01651 MPMX19_01652: MPMX19_01652 - hypothetical protein, at 1,735,215 to 1,735,877 _01652 MPMX19_01653: MPMX19_01653 - Serine acetyltransferase, at 1,736,224 to 1,737,009 _01653 Position (kb) 1735 1736Strain fitness (log2 ratio) -2 -1 0 1 2at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.533 kb on + strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.534 kb on - strand, within MPMX19_01650at 1734.625 kb on + strandat 1734.625 kb on + strandat 1734.649 kb on + strandat 1734.649 kb on + strandat 1734.649 kb on + strandat 1734.649 kb on + strandat 1734.649 kb on + strandat 1734.719 kb on + strandat 1734.719 kb on + strandat 1734.719 kb on + strandat 1734.719 kb on + strandat 1734.719 kb on + strandat 1734.719 kb on + strandat 1734.750 kb on + strand, within MPMX19_01651at 1734.750 kb on + strand, within MPMX19_01651at 1734.750 kb on + strand, within MPMX19_01651at 1735.216 kb on + strandat 1735.216 kb on + strandat 1735.217 kb on - strandat 1735.217 kb on - strandat 1735.217 kb on - strandat 1735.217 kb on - strandat 1735.262 kb on - strandat 1735.594 kb on + strand, within MPMX19_01652at 1735.594 kb on + strand, within MPMX19_01652at 1735.594 kb on + strand, within MPMX19_01652at 1735.594 kb on + strand, within MPMX19_01652at 1735.595 kb on - strand, within MPMX19_01652at 1735.595 kb on - strand, within MPMX19_01652at 1735.595 kb on - strand, within MPMX19_01652at 1735.595 kb on - strand, within MPMX19_01652at 1735.595 kb on - strand, within MPMX19_01652at 1735.654 kb on + strand, within MPMX19_01652at 1735.655 kb on - strand, within MPMX19_01652at 1735.655 kb on - strand, within MPMX19_01652at 1735.655 kb on - strand, within MPMX19_01652at 1735.655 kb on - strand, within MPMX19_01652at 1735.655 kb on - strand, within MPMX19_01652at 1735.719 kb on - strand, within MPMX19_01652at 1735.828 kb on + strandat 1735.828 kb on + strandat 1735.829 kb on - strandat 1736.050 kb on + strandat 1736.050 kb on + strandat 1736.050 kb on + strandat 1736.052 kb on + strandat 1736.052 kb on + strandat 1736.052 kb on + strandat 1736.052 kb on + strandat 1736.052 kb on + strandat 1736.052 kb on + strandat 1736.126 kb on + strandat 1736.126 kb on + strandat 1736.126 kb on + strandat 1736.239 kb on + strandat 1736.239 kb on + strandat 1736.239 kb on + strandat 1736.241 kb on + strandat 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.803 kb on + strand, within MPMX19_01653at 1736.803 kb on + strand, within MPMX19_01653at 1736.803 kb on + strand, within MPMX19_01653at 1736.803 kb on + strand, within MPMX19_01653at 1736.803 kb on + strand, within MPMX19_01653at 1736.804 kb on - strand, within MPMX19_01653

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
remove
1,734,533 + MPMX19_01650 0.85 -0.8
1,734,533 + MPMX19_01650 0.85 +0.2
1,734,533 + MPMX19_01650 0.85 -1.1
1,734,533 + MPMX19_01650 0.85 -0.8
1,734,533 + MPMX19_01650 0.85 +0.8
1,734,533 + MPMX19_01650 0.85 -0.1
1,734,533 + MPMX19_01650 0.85 +0.3
1,734,533 + MPMX19_01650 0.85 -1.4
1,734,533 + MPMX19_01650 0.85 -0.6
1,734,533 + MPMX19_01650 0.85 -0.1
1,734,533 + MPMX19_01650 0.85 +0.2
1,734,533 + MPMX19_01650 0.85 +0.5
1,734,533 + MPMX19_01650 0.85 -1.1
1,734,533 + MPMX19_01650 0.85 -1.5
1,734,533 + MPMX19_01650 0.85 -1.2
1,734,533 + MPMX19_01650 0.85 -2.3
1,734,533 + MPMX19_01650 0.85 -0.5
1,734,533 + MPMX19_01650 0.85 +0.4
1,734,533 + MPMX19_01650 0.85 +0.5
1,734,533 + MPMX19_01650 0.85 +0.0
1,734,533 + MPMX19_01650 0.85 +0.1
1,734,533 + MPMX19_01650 0.85 -0.1
1,734,533 + MPMX19_01650 0.85 +1.1
1,734,533 + MPMX19_01650 0.85 +0.5
1,734,533 + MPMX19_01650 0.85 +0.3
1,734,533 + MPMX19_01650 0.85 -0.4
1,734,533 + MPMX19_01650 0.85 +0.1
1,734,533 + MPMX19_01650 0.85 -0.8
1,734,533 + MPMX19_01650 0.85 -1.1
1,734,533 + MPMX19_01650 0.85 -1.5
1,734,534 - MPMX19_01650 0.86 +0.7
1,734,534 - MPMX19_01650 0.86 -1.4
1,734,534 - MPMX19_01650 0.86 -1.2
1,734,534 - MPMX19_01650 0.86 -0.7
1,734,534 - MPMX19_01650 0.86 -1.3
1,734,534 - MPMX19_01650 0.86 -0.4
1,734,534 - MPMX19_01650 0.86 -0.4
1,734,534 - MPMX19_01650 0.86 -0.2
1,734,534 - MPMX19_01650 0.86 -0.8
1,734,534 - MPMX19_01650 0.86 +0.7
1,734,534 - MPMX19_01650 0.86 -1.4
1,734,534 - MPMX19_01650 0.86 -0.1
1,734,534 - MPMX19_01650 0.86 -0.1
1,734,534 - MPMX19_01650 0.86 -0.3
1,734,534 - MPMX19_01650 0.86 -2.0
1,734,534 - MPMX19_01650 0.86 -0.3
1,734,534 - MPMX19_01650 0.86 -1.1
1,734,625 + -0.9
1,734,625 + +0.1
1,734,649 + -1.0
1,734,649 + -1.7
1,734,649 + -1.1
1,734,649 + +0.0
1,734,649 + -0.5
1,734,719 + -1.4
1,734,719 + +0.9
1,734,719 + -1.0
1,734,719 + +0.3
1,734,719 + -0.9
1,734,719 + -1.3
1,734,750 + MPMX19_01651 0.11 -1.5
1,734,750 + MPMX19_01651 0.11 +0.0
1,734,750 + MPMX19_01651 0.11 +0.5
1,735,216 + -1.5
1,735,216 + -0.7
1,735,217 - +0.1
1,735,217 - -0.7
1,735,217 - -2.3
1,735,217 - -0.5
1,735,262 - -0.7
1,735,594 + MPMX19_01652 0.57 +0.3
1,735,594 + MPMX19_01652 0.57 +0.1
1,735,594 + MPMX19_01652 0.57 +1.5
1,735,594 + MPMX19_01652 0.57 +1.1
1,735,595 - MPMX19_01652 0.57 +0.9
1,735,595 - MPMX19_01652 0.57 +0.9
1,735,595 - MPMX19_01652 0.57 -0.2
1,735,595 - MPMX19_01652 0.57 -0.4
1,735,595 - MPMX19_01652 0.57 -0.7
1,735,654 + MPMX19_01652 0.66 +1.5
1,735,655 - MPMX19_01652 0.66 -0.6
1,735,655 - MPMX19_01652 0.66 +0.1
1,735,655 - MPMX19_01652 0.66 +0.2
1,735,655 - MPMX19_01652 0.66 +1.8
1,735,655 - MPMX19_01652 0.66 -0.3
1,735,719 - MPMX19_01652 0.76 -0.1
1,735,828 + -0.1
1,735,828 + +1.5
1,735,829 - +0.1
1,736,050 + -1.5
1,736,050 + -0.1
1,736,050 + -2.2
1,736,052 + -0.5
1,736,052 + +0.2
1,736,052 + +0.4
1,736,052 + +1.5
1,736,052 + +0.2
1,736,052 + +0.2
1,736,126 + +0.2
1,736,126 + +1.0
1,736,126 + +2.2
1,736,239 + -0.3
1,736,239 + -0.5
1,736,239 + -2.2
1,736,241 + +1.2
1,736,560 + MPMX19_01653 0.43 -1.1
1,736,560 + MPMX19_01653 0.43 -0.7
1,736,560 + MPMX19_01653 0.43 -0.3
1,736,560 + MPMX19_01653 0.43 -1.2
1,736,560 + MPMX19_01653 0.43 -1.1
1,736,560 + MPMX19_01653 0.43 +2.0
1,736,560 + MPMX19_01653 0.43 +0.6
1,736,560 + MPMX19_01653 0.43 -0.1
1,736,560 + MPMX19_01653 0.43 +1.0
1,736,560 + MPMX19_01653 0.43 +0.8
1,736,560 + MPMX19_01653 0.43 -2.4
1,736,560 + MPMX19_01653 0.43 -0.4
1,736,560 + MPMX19_01653 0.43 +0.2
1,736,560 + MPMX19_01653 0.43 -0.2
1,736,560 + MPMX19_01653 0.43 -0.5
1,736,560 + MPMX19_01653 0.43 +0.4
1,736,560 + MPMX19_01653 0.43 -0.8
1,736,560 + MPMX19_01653 0.43 +0.1
1,736,560 + MPMX19_01653 0.43 +0.7
1,736,560 + MPMX19_01653 0.43 +0.7
1,736,560 + MPMX19_01653 0.43 -1.7
1,736,560 + MPMX19_01653 0.43 -1.0
1,736,560 + MPMX19_01653 0.43 -0.0
1,736,560 + MPMX19_01653 0.43 +1.1
1,736,803 + MPMX19_01653 0.74 -0.5
1,736,803 + MPMX19_01653 0.74 -0.1
1,736,803 + MPMX19_01653 0.74 -0.2
1,736,803 + MPMX19_01653 0.74 -0.5
1,736,803 + MPMX19_01653 0.74 +0.0
1,736,804 - MPMX19_01653 0.74 -0.5

Or see this region's nucleotide sequence