Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01099 and MPMX19_01100 are separated by 16 nucleotides MPMX19_01100 and MPMX19_01101 are separated by 20 nucleotides MPMX19_01101 and MPMX19_01102 are separated by 15 nucleotides
MPMX19_01099: MPMX19_01099 - 1-deoxy-D-xylulose-5-phosphate synthase, at 1,134,098 to 1,135,471
_01099
MPMX19_01100: MPMX19_01100 - Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, at 1,135,488 to 1,136,810
_01100
MPMX19_01101: MPMX19_01101 - hypothetical protein, at 1,136,831 to 1,137,133
_01101
MPMX19_01102: MPMX19_01102 - Dihydrolipoyl dehydrogenase, at 1,137,149 to 1,138,546
_01102
Position (kb) 1135
1136
1137 Strain fitness (log2 ratio) -2
-1
0
1 at 1135.435 kb on + strand at 1135.463 kb on + strand at 1137.020 kb on + strand, within MPMX19_01101 at 1137.053 kb on + strand, within MPMX19_01101 at 1137.053 kb on + strand, within MPMX19_01101 at 1137.053 kb on + strand, within MPMX19_01101 at 1137.164 kb on + strand at 1137.165 kb on - strand at 1137.725 kb on + strand, within MPMX19_01102
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 1,135,435 + +0.3 1,135,463 + -1.0 1,137,020 + MPMX19_01101 0.62 -1.3 1,137,053 + MPMX19_01101 0.73 -0.5 1,137,053 + MPMX19_01101 0.73 +1.2 1,137,053 + MPMX19_01101 0.73 -1.8 1,137,164 + -1.2 1,137,165 - -0.5 1,137,725 + MPMX19_01102 0.41 -1.3
Or see this region's nucleotide sequence