Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00245 and MPMX19_00246 are separated by 99 nucleotides MPMX19_00246 and MPMX19_00247 are separated by 198 nucleotides MPMX19_00247 and MPMX19_00248 are separated by 399 nucleotides
MPMX19_00245: MPMX19_00245 - hypothetical protein, at 245,855 to 246,589
_00245
MPMX19_00246: MPMX19_00246 - hypothetical protein, at 246,689 to 247,054
_00246
MPMX19_00247: MPMX19_00247 - Ferric uptake regulation protein, at 247,253 to 247,690
_00247
MPMX19_00248: MPMX19_00248 - Sensor histidine kinase RcsC, at 248,090 to 249,313
_00248
Position (kb) 247
248 Strain fitness (log2 ratio) -2
-1
0
1
2 at 246.599 kb on + strand at 246.600 kb on - strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.248 kb on + strand at 247.248 kb on + strand at 247.249 kb on - strand at 247.249 kb on - strand at 247.249 kb on - strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.251 kb on - strand at 247.251 kb on - strand at 247.251 kb on - strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.267 kb on + strand at 247.268 kb on - strand at 247.296 kb on + strand at 247.296 kb on + strand at 247.297 kb on - strand, within MPMX19_00247 at 247.297 kb on - strand, within MPMX19_00247 at 247.297 kb on - strand, within MPMX19_00247 at 247.326 kb on + strand, within MPMX19_00247 at 247.326 kb on + strand, within MPMX19_00247 at 247.343 kb on + strand, within MPMX19_00247 at 247.343 kb on + strand, within MPMX19_00247 at 247.344 kb on - strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.410 kb on - strand, within MPMX19_00247 at 247.410 kb on - strand, within MPMX19_00247 at 247.410 kb on - strand, within MPMX19_00247 at 247.410 kb on - strand, within MPMX19_00247 at 247.446 kb on + strand, within MPMX19_00247 at 247.519 kb on - strand, within MPMX19_00247 at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.698 kb on - strand at 247.698 kb on - strand at 247.698 kb on - strand at 247.698 kb on - strand at 247.698 kb on - strand at 247.698 kb on - strand at 247.698 kb on - strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.924 kb on + strand at 247.925 kb on - strand at 247.963 kb on + strand at 247.963 kb on + strand at 247.964 kb on - strand at 247.964 kb on - strand at 247.964 kb on - strand at 247.980 kb on + strand at 247.980 kb on + strand at 247.981 kb on - strand at 247.981 kb on - strand at 247.991 kb on + strand at 247.991 kb on + strand at 247.991 kb on + strand at 247.991 kb on + strand at 247.991 kb on + strand at 247.991 kb on + strand at 247.992 kb on - strand at 247.992 kb on - strand at 247.992 kb on - strand at 247.992 kb on - strand at 248.143 kb on + strand at 248.143 kb on + strand at 248.143 kb on + strand at 248.144 kb on - strand at 248.144 kb on - strand at 248.144 kb on - strand at 248.144 kb on - strand at 248.144 kb on - strand at 248.144 kb on - strand at 248.501 kb on + strand, within MPMX19_00248 at 248.501 kb on + strand, within MPMX19_00248 at 248.501 kb on + strand, within MPMX19_00248 at 248.501 kb on + strand, within MPMX19_00248 at 248.501 kb on + strand, within MPMX19_00248 at 248.501 kb on + strand, within MPMX19_00248 at 248.501 kb on + strand, within MPMX19_00248 at 248.501 kb on + strand, within MPMX19_00248 at 248.502 kb on - strand, within MPMX19_00248 at 248.502 kb on - strand, within MPMX19_00248 at 248.502 kb on - strand, within MPMX19_00248 at 248.502 kb on - strand, within MPMX19_00248 at 248.502 kb on - strand, within MPMX19_00248 at 248.502 kb on - strand, within MPMX19_00248 at 248.502 kb on - strand, within MPMX19_00248
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 246,599 + +0.9 246,600 - +1.0 247,246 + -0.4 247,246 + +0.6 247,246 + -1.0 247,246 + -0.1 247,246 + -1.2 247,246 + +1.1 247,246 + -1.2 247,246 + +0.3 247,247 - -0.7 247,247 - -0.7 247,247 - -0.9 247,247 - -0.7 247,247 - +0.7 247,247 - -1.1 247,247 - -0.3 247,247 - +0.9 247,247 - +0.5 247,247 - -0.6 247,247 - +1.0 247,248 + -0.5 247,248 + -1.3 247,249 - -0.3 247,249 - -0.9 247,249 - +0.6 247,250 + -0.2 247,250 + +0.3 247,250 + -0.4 247,250 + +0.4 247,250 + +0.2 247,250 + -0.4 247,250 + -0.8 247,250 + -1.1 247,250 + -1.1 247,250 + -0.4 247,250 + +0.1 247,250 + -0.8 247,250 + +0.1 247,250 + -0.4 247,251 - +0.1 247,251 - -1.2 247,251 - -2.1 247,254 + -0.1 247,254 + -1.2 247,254 + -1.0 247,254 + -1.4 247,254 + -0.4 247,254 + -0.7 247,254 + +0.3 247,254 + -0.5 247,254 + -1.7 247,254 + -0.4 247,254 + -0.4 247,254 + -0.3 247,254 + -2.3 247,254 + +0.1 247,254 + +0.6 247,254 + +0.0 247,254 + -0.3 247,255 - -0.3 247,255 - -0.1 247,255 - +0.5 247,255 - -0.6 247,255 - +0.3 247,255 - -2.4 247,255 - +0.2 247,255 - -0.3 247,255 - +0.1 247,255 - -0.3 247,267 + -0.3 247,268 - -0.4 247,296 + -0.4 247,296 + +0.6 247,297 - MPMX19_00247 0.10 +0.0 247,297 - MPMX19_00247 0.10 -0.9 247,297 - MPMX19_00247 0.10 -0.5 247,326 + MPMX19_00247 0.17 -1.6 247,326 + MPMX19_00247 0.17 -1.0 247,343 + MPMX19_00247 0.21 -0.2 247,343 + MPMX19_00247 0.21 -0.1 247,344 - MPMX19_00247 0.21 -1.1 247,409 + MPMX19_00247 0.36 +0.4 247,409 + MPMX19_00247 0.36 -1.1 247,409 + MPMX19_00247 0.36 -0.5 247,409 + MPMX19_00247 0.36 +1.1 247,409 + MPMX19_00247 0.36 +0.6 247,409 + MPMX19_00247 0.36 -0.4 247,409 + MPMX19_00247 0.36 -0.4 247,409 + MPMX19_00247 0.36 +0.4 247,409 + MPMX19_00247 0.36 -0.7 247,409 + MPMX19_00247 0.36 -0.7 247,409 + MPMX19_00247 0.36 -0.2 247,409 + MPMX19_00247 0.36 -0.6 247,410 - MPMX19_00247 0.36 -1.4 247,410 - MPMX19_00247 0.36 -1.7 247,410 - MPMX19_00247 0.36 -1.3 247,410 - MPMX19_00247 0.36 -0.6 247,446 + MPMX19_00247 0.44 -0.4 247,519 - MPMX19_00247 0.61 -0.1 247,697 + -0.6 247,697 + +0.9 247,697 + -0.4 247,697 + -0.5 247,697 + +0.4 247,697 + +0.6 247,697 + +0.0 247,697 + +0.4 247,697 + +0.3 247,697 + -1.0 247,697 + +0.6 247,697 + -1.0 247,697 + -0.5 247,698 - -0.2 247,698 - -1.4 247,698 - -1.0 247,698 - +0.0 247,698 - -1.1 247,698 - -1.4 247,698 - +2.2 247,841 + -0.4 247,841 + -0.6 247,841 + -0.2 247,841 + -1.4 247,841 + -2.7 247,841 + +0.0 247,841 + -1.3 247,841 + -1.9 247,841 + -0.5 247,841 + -1.0 247,841 + -0.7 247,841 + -1.0 247,841 + -0.7 247,841 + -0.6 247,842 - +0.9 247,842 - +0.9 247,842 - -1.7 247,842 - -0.6 247,842 - +1.1 247,842 - +0.4 247,842 - +0.3 247,842 - -0.3 247,842 - +0.9 247,842 - -0.6 247,842 - +1.0 247,842 - -0.4 247,842 - +0.6 247,842 - +0.4 247,842 - -0.3 247,842 - -0.5 247,924 + +0.5 247,925 - +0.1 247,963 + -0.7 247,963 + +0.0 247,964 - -0.4 247,964 - -1.2 247,964 - -1.0 247,980 + -0.4 247,980 + -0.1 247,981 - +1.0 247,981 - -0.3 247,991 + -0.9 247,991 + -0.1 247,991 + -0.1 247,991 + -1.4 247,991 + +0.8 247,991 + -0.4 247,992 - +0.0 247,992 - -0.3 247,992 - +0.1 247,992 - -0.3 248,143 + -0.8 248,143 + -2.2 248,143 + +0.6 248,144 - -0.9 248,144 - +2.2 248,144 - -1.0 248,144 - +1.6 248,144 - +0.3 248,144 - +0.8 248,501 + MPMX19_00248 0.34 +0.0 248,501 + MPMX19_00248 0.34 -0.6 248,501 + MPMX19_00248 0.34 -1.7 248,501 + MPMX19_00248 0.34 -0.3 248,501 + MPMX19_00248 0.34 +0.3 248,501 + MPMX19_00248 0.34 -1.9 248,501 + MPMX19_00248 0.34 -0.3 248,501 + MPMX19_00248 0.34 -0.8 248,502 - MPMX19_00248 0.34 +0.0 248,502 - MPMX19_00248 0.34 -2.6 248,502 - MPMX19_00248 0.34 +0.2 248,502 - MPMX19_00248 0.34 +0.4 248,502 - MPMX19_00248 0.34 -0.7 248,502 - MPMX19_00248 0.34 -0.2 248,502 - MPMX19_00248 0.34 -1.6
Or see this region's nucleotide sequence