Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00065

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00063 and MPMX19_00064 are separated by 248 nucleotidesMPMX19_00064 and MPMX19_00065 are separated by 45 nucleotidesMPMX19_00065 and MPMX19_00066 overlap by 4 nucleotidesMPMX19_00066 and MPMX19_00067 are separated by 254 nucleotides MPMX19_00063: MPMX19_00063 - hypothetical protein, at 66,045 to 67,442 _00063 MPMX19_00064: MPMX19_00064 - hypothetical protein, at 67,691 to 68,116 _00064 MPMX19_00065: MPMX19_00065 - hypothetical protein, at 68,162 to 68,395 _00065 MPMX19_00066: MPMX19_00066 - hypothetical protein, at 68,392 to 68,634 _00066 MPMX19_00067: MPMX19_00067 - Sensor histidine kinase RcsC, at 68,889 to 71,009 _00067 Position (kb) 68 69Strain fitness (log2 ratio) -3 -2 -1 0 1at 67.511 kb on + strandat 67.511 kb on + strandat 67.603 kb on + strandat 67.604 kb on - strandat 67.609 kb on + strandat 67.625 kb on + strandat 67.625 kb on + strandat 67.626 kb on - strandat 67.675 kb on + strandat 67.676 kb on - strandat 67.676 kb on - strandat 67.676 kb on - strandat 67.783 kb on + strand, within MPMX19_00064at 67.783 kb on + strand, within MPMX19_00064at 67.783 kb on + strand, within MPMX19_00064at 67.783 kb on + strand, within MPMX19_00064at 67.783 kb on + strand, within MPMX19_00064at 67.783 kb on + strand, within MPMX19_00064at 67.783 kb on + strand, within MPMX19_00064at 67.784 kb on - strand, within MPMX19_00064at 67.784 kb on - strand, within MPMX19_00064at 67.784 kb on - strand, within MPMX19_00064at 67.784 kb on - strand, within MPMX19_00064at 67.784 kb on - strand, within MPMX19_00064at 67.784 kb on - strand, within MPMX19_00064at 67.877 kb on + strand, within MPMX19_00064at 67.877 kb on + strand, within MPMX19_00064at 67.877 kb on + strand, within MPMX19_00064at 67.877 kb on + strand, within MPMX19_00064at 67.877 kb on + strand, within MPMX19_00064at 67.877 kb on + strand, within MPMX19_00064at 67.877 kb on + strand, within MPMX19_00064at 67.877 kb on + strand, within MPMX19_00064at 67.878 kb on - strand, within MPMX19_00064at 67.878 kb on - strand, within MPMX19_00064at 67.878 kb on - strand, within MPMX19_00064at 67.878 kb on - strand, within MPMX19_00064at 67.878 kb on - strand, within MPMX19_00064at 67.946 kb on + strand, within MPMX19_00064at 67.946 kb on + strand, within MPMX19_00064at 67.947 kb on - strand, within MPMX19_00064at 67.947 kb on - strand, within MPMX19_00064at 67.947 kb on - strand, within MPMX19_00064at 67.947 kb on - strand, within MPMX19_00064at 67.947 kb on - strand, within MPMX19_00064at 67.947 kb on - strand, within MPMX19_00064at 67.947 kb on - strand, within MPMX19_00064at 67.947 kb on - strand, within MPMX19_00064at 67.947 kb on - strand, within MPMX19_00064at 67.973 kb on + strand, within MPMX19_00064at 67.974 kb on - strand, within MPMX19_00064at 67.974 kb on - strand, within MPMX19_00064at 67.974 kb on - strand, within MPMX19_00064at 67.974 kb on - strand, within MPMX19_00064at 68.253 kb on + strand, within MPMX19_00065at 68.253 kb on + strand, within MPMX19_00065at 68.253 kb on + strand, within MPMX19_00065at 68.253 kb on + strand, within MPMX19_00065at 68.254 kb on - strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.464 kb on + strand, within MPMX19_00066at 68.465 kb on - strand, within MPMX19_00066at 68.613 kb on + strandat 68.819 kb on + strandat 68.819 kb on + strandat 68.819 kb on + strandat 68.819 kb on + strandat 68.819 kb on + strandat 68.819 kb on + strandat 68.819 kb on + strandat 68.819 kb on + strandat 68.819 kb on + strandat 68.819 kb on + strandat 68.819 kb on + strandat 68.819 kb on + strandat 68.819 kb on + strandat 68.819 kb on + strandat 68.819 kb on + strandat 68.819 kb on + strandat 68.819 kb on + strandat 68.819 kb on + strandat 68.819 kb on + strandat 68.819 kb on + strandat 68.819 kb on + strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.820 kb on - strandat 68.941 kb on + strandat 68.942 kb on - strandat 69.018 kb on + strandat 69.019 kb on - strandat 69.019 kb on - strandat 69.019 kb on - strandat 69.019 kb on - strandat 69.019 kb on - strandat 69.019 kb on - strandat 69.019 kb on - strandat 69.174 kb on + strand, within MPMX19_00067at 69.174 kb on + strand, within MPMX19_00067at 69.174 kb on + strand, within MPMX19_00067at 69.174 kb on + strand, within MPMX19_00067at 69.174 kb on + strand, within MPMX19_00067at 69.175 kb on - strand, within MPMX19_00067at 69.175 kb on - strand, within MPMX19_00067at 69.175 kb on - strand, within MPMX19_00067at 69.175 kb on - strand, within MPMX19_00067at 69.175 kb on - strand, within MPMX19_00067at 69.363 kb on + strand, within MPMX19_00067at 69.363 kb on + strand, within MPMX19_00067at 69.364 kb on - strand, within MPMX19_00067

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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67,511 + -2.2
67,511 + -0.2
67,603 + -0.3
67,604 - -1.1
67,609 + +0.2
67,625 + -2.0
67,625 + +0.3
67,626 - -0.7
67,675 + +0.6
67,676 - -0.6
67,676 - +1.6
67,676 - -0.9
67,783 + MPMX19_00064 0.22 -1.6
67,783 + MPMX19_00064 0.22 -1.2
67,783 + MPMX19_00064 0.22 -0.8
67,783 + MPMX19_00064 0.22 -0.6
67,783 + MPMX19_00064 0.22 -1.4
67,783 + MPMX19_00064 0.22 +0.3
67,783 + MPMX19_00064 0.22 -0.7
67,784 - MPMX19_00064 0.22 -1.3
67,784 - MPMX19_00064 0.22 -0.4
67,784 - MPMX19_00064 0.22 -0.6
67,784 - MPMX19_00064 0.22 -0.7
67,784 - MPMX19_00064 0.22 -0.5
67,784 - MPMX19_00064 0.22 -0.2
67,877 + MPMX19_00064 0.44 +0.6
67,877 + MPMX19_00064 0.44 +1.0
67,877 + MPMX19_00064 0.44 +0.6
67,877 + MPMX19_00064 0.44 +0.3
67,877 + MPMX19_00064 0.44 -1.0
67,877 + MPMX19_00064 0.44 +1.0
67,877 + MPMX19_00064 0.44 +0.4
67,877 + MPMX19_00064 0.44 -2.9
67,878 - MPMX19_00064 0.44 +0.0
67,878 - MPMX19_00064 0.44 -0.1
67,878 - MPMX19_00064 0.44 +0.0
67,878 - MPMX19_00064 0.44 -1.2
67,878 - MPMX19_00064 0.44 +0.4
67,946 + MPMX19_00064 0.60 +0.3
67,946 + MPMX19_00064 0.60 +0.0
67,947 - MPMX19_00064 0.60 -0.6
67,947 - MPMX19_00064 0.60 +1.4
67,947 - MPMX19_00064 0.60 +0.5
67,947 - MPMX19_00064 0.60 -0.7
67,947 - MPMX19_00064 0.60 +0.0
67,947 - MPMX19_00064 0.60 -0.4
67,947 - MPMX19_00064 0.60 +1.3
67,947 - MPMX19_00064 0.60 +0.4
67,947 - MPMX19_00064 0.60 -2.2
67,973 + MPMX19_00064 0.66 -0.8
67,974 - MPMX19_00064 0.66 +0.4
67,974 - MPMX19_00064 0.66 -1.0
67,974 - MPMX19_00064 0.66 -0.1
67,974 - MPMX19_00064 0.66 -2.5
68,253 + MPMX19_00065 0.39 +0.9
68,253 + MPMX19_00065 0.39 +1.3
68,253 + MPMX19_00065 0.39 +0.2
68,253 + MPMX19_00065 0.39 -0.8
68,254 - MPMX19_00065 0.39 -0.5
68,331 + MPMX19_00065 0.72 -2.9
68,331 + MPMX19_00065 0.72 -1.3
68,331 + MPMX19_00065 0.72 +0.3
68,331 + MPMX19_00065 0.72 -0.5
68,331 + MPMX19_00065 0.72 -0.4
68,331 + MPMX19_00065 0.72 +0.6
68,331 + MPMX19_00065 0.72 -1.0
68,331 + MPMX19_00065 0.72 -1.2
68,331 + MPMX19_00065 0.72 -0.5
68,331 + MPMX19_00065 0.72 +0.2
68,331 + MPMX19_00065 0.72 +0.1
68,331 + MPMX19_00065 0.72 -1.2
68,331 + MPMX19_00065 0.72 -1.4
68,331 + MPMX19_00065 0.72 +0.0
68,331 + MPMX19_00065 0.72 -0.6
68,331 + MPMX19_00065 0.72 -1.5
68,331 + MPMX19_00065 0.72 -0.6
68,331 + MPMX19_00065 0.72 -2.2
68,331 + MPMX19_00065 0.72 +0.3
68,331 + MPMX19_00065 0.72 +0.6
68,331 + MPMX19_00065 0.72 -1.6
68,331 + MPMX19_00065 0.72 +0.4
68,331 + MPMX19_00065 0.72 -0.2
68,331 + MPMX19_00065 0.72 +0.8
68,331 + MPMX19_00065 0.72 +0.4
68,331 + MPMX19_00065 0.72 -0.6
68,331 + MPMX19_00065 0.72 -0.7
68,331 + MPMX19_00065 0.72 -0.6
68,331 + MPMX19_00065 0.72 +0.4
68,331 + MPMX19_00065 0.72 +0.0
68,332 - MPMX19_00065 0.73 -1.3
68,332 - MPMX19_00065 0.73 -0.3
68,332 - MPMX19_00065 0.73 +1.4
68,332 - MPMX19_00065 0.73 -1.6
68,332 - MPMX19_00065 0.73 -0.4
68,332 - MPMX19_00065 0.73 +1.4
68,332 - MPMX19_00065 0.73 -1.2
68,332 - MPMX19_00065 0.73 +0.0
68,332 - MPMX19_00065 0.73 +0.4
68,332 - MPMX19_00065 0.73 -0.6
68,332 - MPMX19_00065 0.73 -1.2
68,332 - MPMX19_00065 0.73 -1.1
68,332 - MPMX19_00065 0.73 -0.0
68,332 - MPMX19_00065 0.73 +1.4
68,332 - MPMX19_00065 0.73 +0.2
68,332 - MPMX19_00065 0.73 -0.8
68,332 - MPMX19_00065 0.73 -0.6
68,332 - MPMX19_00065 0.73 +0.4
68,332 - MPMX19_00065 0.73 -1.2
68,332 - MPMX19_00065 0.73 +0.4
68,332 - MPMX19_00065 0.73 -0.6
68,332 - MPMX19_00065 0.73 -0.6
68,332 - MPMX19_00065 0.73 -0.6
68,332 - MPMX19_00065 0.73 +0.7
68,332 - MPMX19_00065 0.73 -1.5
68,332 - MPMX19_00065 0.73 -0.5
68,332 - MPMX19_00065 0.73 -0.5
68,332 - MPMX19_00065 0.73 -0.8
68,332 - MPMX19_00065 0.73 -0.6
68,332 - MPMX19_00065 0.73 -1.7
68,332 - MPMX19_00065 0.73 -1.4
68,332 - MPMX19_00065 0.73 -1.7
68,332 - MPMX19_00065 0.73 -1.7
68,464 + MPMX19_00066 0.30 +0.2
68,465 - MPMX19_00066 0.30 -0.5
68,613 + -1.3
68,819 + -0.5
68,819 + -0.6
68,819 + -0.7
68,819 + -1.3
68,819 + -0.7
68,819 + -0.4
68,819 + +0.6
68,819 + +1.3
68,819 + -0.3
68,819 + -1.2
68,819 + -1.0
68,819 + -0.4
68,819 + -1.2
68,819 + -0.2
68,819 + -1.4
68,819 + -0.4
68,819 + -1.2
68,819 + -0.8
68,819 + -0.3
68,819 + -0.7
68,819 + -0.6
68,820 - -0.7
68,820 - -1.8
68,820 - -3.0
68,820 - -1.4
68,820 - -0.9
68,820 - +0.9
68,820 - +0.0
68,820 - -0.2
68,820 - -1.6
68,820 - -0.7
68,820 - +0.5
68,820 - +0.2
68,820 - -0.3
68,820 - -1.7
68,820 - -0.1
68,820 - -0.7
68,820 - +1.1
68,820 - -0.1
68,820 - -0.4
68,820 - -0.8
68,820 - -1.0
68,820 - -0.3
68,820 - -0.0
68,820 - -0.6
68,820 - +0.6
68,820 - -0.5
68,941 + -0.4
68,942 - -1.1
69,018 + -2.0
69,019 - +0.2
69,019 - -0.8
69,019 - -1.4
69,019 - -0.7
69,019 - +0.6
69,019 - -1.0
69,019 - -0.3
69,174 + MPMX19_00067 0.13 -0.3
69,174 + MPMX19_00067 0.13 +1.0
69,174 + MPMX19_00067 0.13 -0.1
69,174 + MPMX19_00067 0.13 -0.9
69,174 + MPMX19_00067 0.13 -0.4
69,175 - MPMX19_00067 0.13 -0.4
69,175 - MPMX19_00067 0.13 +0.4
69,175 - MPMX19_00067 0.13 -0.4
69,175 - MPMX19_00067 0.13 +0.8
69,175 - MPMX19_00067 0.13 -0.7
69,363 + MPMX19_00067 0.22 -0.6
69,363 + MPMX19_00067 0.22 -0.7
69,364 - MPMX19_00067 0.22 -1.0

Or see this region's nucleotide sequence