Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00044 and MPMX19_00045 are separated by 37 nucleotides MPMX19_00045 and MPMX19_00046 are separated by 150 nucleotides MPMX19_00046 and MPMX19_00047 are separated by 238 nucleotides
MPMX19_00044: MPMX19_00044 - hypothetical protein, at 46,629 to 47,423
_00044
MPMX19_00045: MPMX19_00045 - Alkaline phosphatase synthesis transcriptional regulatory protein SphR, at 47,461 to 48,165
_00045
MPMX19_00046: MPMX19_00046 - hypothetical protein, at 48,316 to 48,834
_00046
MPMX19_00047: MPMX19_00047 - Riboflavin biosynthesis protein RibBA, at 49,073 to 50,419
_00047
Position (kb) 47
48
49 Strain fitness (log2 ratio) -2
-1
0
1
2 at 46.468 kb on + strand at 46.506 kb on - strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.531 kb on - strand at 46.531 kb on - strand at 46.540 kb on + strand at 46.540 kb on + strand at 46.540 kb on + strand at 46.540 kb on + strand at 46.540 kb on + strand at 46.540 kb on + strand at 46.541 kb on - strand at 46.541 kb on - strand at 46.541 kb on - strand at 46.541 kb on - strand at 46.541 kb on - strand at 46.541 kb on - strand at 46.541 kb on - strand at 46.541 kb on - strand at 47.304 kb on + strand, within MPMX19_00044 at 47.304 kb on + strand, within MPMX19_00044 at 47.304 kb on + strand, within MPMX19_00044 at 47.305 kb on - strand, within MPMX19_00044 at 47.305 kb on - strand, within MPMX19_00044 at 47.305 kb on - strand, within MPMX19_00044 at 47.305 kb on - strand, within MPMX19_00044 at 47.305 kb on - strand, within MPMX19_00044 at 47.305 kb on - strand, within MPMX19_00044 at 48.172 kb on + strand at 48.172 kb on + strand at 48.172 kb on + strand at 48.172 kb on + strand at 48.172 kb on + strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.246 kb on + strand at 48.246 kb on + strand at 48.246 kb on + strand at 48.246 kb on + strand at 48.246 kb on + strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.755 kb on + strand, within MPMX19_00046 at 48.755 kb on + strand, within MPMX19_00046 at 48.755 kb on + strand, within MPMX19_00046 at 48.756 kb on - strand, within MPMX19_00046 at 48.756 kb on - strand, within MPMX19_00046 at 48.875 kb on + strand at 48.875 kb on + strand at 48.875 kb on + strand at 48.875 kb on + strand at 48.875 kb on + strand at 48.875 kb on + strand at 48.876 kb on - strand at 48.876 kb on - strand at 48.876 kb on - strand at 48.876 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 46,468 + -0.3 46,506 - -0.1 46,530 + -0.4 46,530 + -0.8 46,530 + +1.4 46,530 + +0.4 46,530 + -0.2 46,530 + -0.1 46,530 + -0.4 46,530 + -1.0 46,530 + +0.0 46,531 - +0.5 46,531 - +0.3 46,540 + +0.0 46,540 + +0.0 46,540 + -1.4 46,540 + +0.4 46,540 + -0.6 46,540 + +0.2 46,541 - -0.4 46,541 - -0.8 46,541 - +0.6 46,541 - +0.6 46,541 - -0.6 46,541 - -0.5 46,541 - +0.0 46,541 - -1.2 47,304 + MPMX19_00044 0.85 +1.8 47,304 + MPMX19_00044 0.85 -1.2 47,304 + MPMX19_00044 0.85 -0.3 47,305 - MPMX19_00044 0.85 -1.2 47,305 - MPMX19_00044 0.85 -1.0 47,305 - MPMX19_00044 0.85 -1.1 47,305 - MPMX19_00044 0.85 -1.2 47,305 - MPMX19_00044 0.85 -0.5 47,305 - MPMX19_00044 0.85 -1.9 48,172 + +0.4 48,172 + -1.2 48,172 + +1.2 48,172 + -1.6 48,172 + -0.1 48,173 - +0.0 48,173 - +0.5 48,173 - +0.5 48,173 - -1.1 48,173 - +0.1 48,173 - -0.3 48,173 - +0.5 48,173 - -0.1 48,173 - -1.6 48,173 - -0.7 48,173 - -0.9 48,246 + +0.2 48,246 + +0.6 48,246 + -0.4 48,246 + -0.3 48,246 + +0.8 48,247 - -0.3 48,247 - -1.2 48,247 - -1.2 48,247 - -0.3 48,247 - +1.2 48,247 - -0.1 48,247 - -1.7 48,247 - -0.7 48,247 - -0.6 48,249 + +1.0 48,249 + -0.6 48,249 + -0.4 48,249 + -0.6 48,249 + -1.0 48,249 + +1.2 48,249 + -1.2 48,250 - -0.8 48,250 - +0.3 48,250 - -1.1 48,250 - +1.4 48,250 - -1.0 48,250 - -0.3 48,250 - -0.4 48,250 - -1.2 48,250 - +0.0 48,250 - -0.1 48,250 - -0.7 48,250 - +1.6 48,250 - -0.5 48,250 - +1.6 48,250 - -1.5 48,250 - -0.8 48,250 - -1.3 48,250 - +0.6 48,250 - -0.4 48,250 - +0.8 48,250 - -0.6 48,250 - +0.6 48,250 - +0.1 48,250 - -1.6 48,250 - +0.6 48,250 - +0.0 48,250 - -1.3 48,250 - -0.7 48,250 - -1.8 48,250 - -0.3 48,250 - -0.1 48,755 + MPMX19_00046 0.85 +0.3 48,755 + MPMX19_00046 0.85 +0.6 48,755 + MPMX19_00046 0.85 -0.3 48,756 - MPMX19_00046 0.85 +0.4 48,756 - MPMX19_00046 0.85 -0.2 48,875 + -1.2 48,875 + -1.3 48,875 + -1.1 48,875 + -0.4 48,875 + -0.4 48,875 + -0.4 48,876 - +0.0 48,876 - +2.4 48,876 - -1.6 48,876 - -1.6
Or see this region's nucleotide sequence