Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00005 and MPMX19_00006 are separated by 114 nucleotides MPMX19_00006 and MPMX19_00007 are separated by 46 nucleotides
MPMX19_00005: MPMX19_00005 - hypothetical protein, at 5,363 to 6,445
_00005
MPMX19_00006: MPMX19_00006 - Heat shock protein 15, at 6,560 to 6,997
_00006
MPMX19_00007: MPMX19_00007 - hypothetical protein, at 7,044 to 9,569
_00007
Position (kb) 6
7 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5.647 kb on - strand, within MPMX19_00005 at 5.703 kb on + strand, within MPMX19_00005 at 5.841 kb on + strand, within MPMX19_00005 at 5.842 kb on - strand, within MPMX19_00005 at 5.842 kb on - strand, within MPMX19_00005 at 5.895 kb on + strand, within MPMX19_00005 at 5.895 kb on + strand, within MPMX19_00005 at 5.895 kb on + strand, within MPMX19_00005 at 5.896 kb on - strand, within MPMX19_00005 at 5.896 kb on - strand, within MPMX19_00005 at 6.476 kb on + strand at 6.516 kb on - strand at 6.516 kb on - strand at 6.516 kb on - strand at 6.678 kb on + strand, within MPMX19_00006 at 6.679 kb on - strand, within MPMX19_00006 at 6.726 kb on + strand, within MPMX19_00006 at 6.726 kb on + strand, within MPMX19_00006 at 6.726 kb on + strand, within MPMX19_00006 at 6.726 kb on + strand, within MPMX19_00006 at 6.727 kb on - strand, within MPMX19_00006 at 6.727 kb on - strand, within MPMX19_00006 at 6.933 kb on + strand, within MPMX19_00006 at 6.933 kb on + strand, within MPMX19_00006 at 6.933 kb on + strand, within MPMX19_00006 at 6.933 kb on + strand, within MPMX19_00006 at 6.934 kb on - strand, within MPMX19_00006 at 6.934 kb on - strand, within MPMX19_00006 at 6.934 kb on - strand, within MPMX19_00006 at 7.027 kb on + strand at 7.027 kb on + strand at 7.027 kb on + strand at 7.027 kb on + strand at 7.027 kb on + strand at 7.027 kb on + strand at 7.027 kb on + strand at 7.027 kb on + strand at 7.028 kb on - strand at 7.028 kb on - strand at 7.028 kb on - strand at 7.028 kb on - strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.045 kb on + strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.046 kb on - strand at 7.177 kb on + strand at 7.177 kb on + strand at 7.177 kb on + strand at 7.177 kb on + strand at 7.178 kb on - strand at 7.178 kb on - strand at 7.178 kb on - strand at 7.178 kb on - strand at 7.178 kb on - strand at 7.178 kb on - strand at 7.178 kb on - strand at 7.178 kb on - strand at 7.178 kb on - strand at 7.513 kb on + strand, within MPMX19_00007 at 7.513 kb on + strand, within MPMX19_00007 at 7.513 kb on + strand, within MPMX19_00007 at 7.513 kb on + strand, within MPMX19_00007 at 7.513 kb on + strand, within MPMX19_00007 at 7.513 kb on + strand, within MPMX19_00007 at 7.514 kb on - strand, within MPMX19_00007 at 7.514 kb on - strand, within MPMX19_00007 at 7.514 kb on - strand, within MPMX19_00007
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 5,647 - MPMX19_00005 0.26 -0.6 5,703 + MPMX19_00005 0.31 +0.3 5,841 + MPMX19_00005 0.44 -1.0 5,842 - MPMX19_00005 0.44 -0.2 5,842 - MPMX19_00005 0.44 -0.8 5,895 + MPMX19_00005 0.49 -0.6 5,895 + MPMX19_00005 0.49 -2.0 5,895 + MPMX19_00005 0.49 +0.8 5,896 - MPMX19_00005 0.49 -0.7 5,896 - MPMX19_00005 0.49 -1.2 6,476 + -0.4 6,516 - -1.0 6,516 - +1.0 6,516 - -0.4 6,678 + MPMX19_00006 0.27 -1.3 6,679 - MPMX19_00006 0.27 -1.3 6,726 + MPMX19_00006 0.38 +0.2 6,726 + MPMX19_00006 0.38 -0.6 6,726 + MPMX19_00006 0.38 -1.0 6,726 + MPMX19_00006 0.38 -0.7 6,727 - MPMX19_00006 0.38 +0.4 6,727 - MPMX19_00006 0.38 -0.4 6,933 + MPMX19_00006 0.85 -1.9 6,933 + MPMX19_00006 0.85 -1.0 6,933 + MPMX19_00006 0.85 -1.2 6,933 + MPMX19_00006 0.85 -1.7 6,934 - MPMX19_00006 0.85 -1.1 6,934 - MPMX19_00006 0.85 -1.4 6,934 - MPMX19_00006 0.85 -1.3 7,027 + -1.4 7,027 + -1.1 7,027 + +0.2 7,027 + +0.9 7,027 + +1.1 7,027 + -0.0 7,027 + -0.3 7,027 + -0.2 7,028 - -1.0 7,028 - -0.2 7,028 - -1.4 7,028 - -0.3 7,045 + -0.5 7,045 + -1.0 7,045 + -2.3 7,045 + +1.3 7,045 + +1.4 7,045 + +1.5 7,045 + +1.0 7,045 + -0.8 7,045 + -0.2 7,045 + -1.2 7,045 + +0.0 7,045 + -0.3 7,045 + +0.8 7,045 + -1.1 7,045 + -1.2 7,045 + +0.1 7,045 + -1.6 7,045 + -0.9 7,045 + -0.4 7,045 + -2.3 7,045 + -0.1 7,045 + +0.4 7,045 + -1.2 7,045 + +0.5 7,045 + -0.6 7,045 + +3.2 7,045 + +0.4 7,045 + -0.8 7,045 + -0.4 7,045 + -0.1 7,045 + -1.4 7,046 - -0.9 7,046 - -1.0 7,046 - -1.0 7,046 - +0.2 7,046 - +0.6 7,046 - -1.0 7,046 - -0.3 7,046 - -1.5 7,046 - +0.7 7,046 - +1.3 7,046 - -2.3 7,046 - -1.4 7,046 - +0.1 7,046 - -1.3 7,046 - +0.2 7,046 - +0.9 7,046 - -0.8 7,046 - -0.5 7,046 - +1.4 7,046 - -0.6 7,046 - -0.3 7,046 - -1.4 7,046 - -0.9 7,046 - -0.9 7,046 - -0.2 7,046 - -1.0 7,046 - +1.9 7,046 - -1.2 7,046 - -2.6 7,046 - +0.4 7,046 - +1.4 7,046 - -0.9 7,046 - +0.3 7,177 + -2.1 7,177 + -1.1 7,177 + -2.1 7,177 + +0.4 7,178 - -2.0 7,178 - -1.1 7,178 - +0.0 7,178 - -1.2 7,178 - +0.0 7,178 - +0.4 7,178 - -1.0 7,178 - -0.2 7,178 - -0.4 7,513 + MPMX19_00007 0.19 -0.3 7,513 + MPMX19_00007 0.19 +0.3 7,513 + MPMX19_00007 0.19 -0.5 7,513 + MPMX19_00007 0.19 +0.0 7,513 + MPMX19_00007 0.19 -0.1 7,513 + MPMX19_00007 0.19 -1.6 7,514 - MPMX19_00007 0.19 -0.7 7,514 - MPMX19_00007 0.19 +0.8 7,514 - MPMX19_00007 0.19 +0.7
Or see this region's nucleotide sequence