Experiment: dNMS no carbon
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF94 and GFF95 are separated by 149 nucleotides GFF95 and GFF96 are separated by 75 nucleotides GFF96 and GFF97 are separated by 95 nucleotides GFF97 and GFF98 are separated by 20 nucleotides
GFF94 - Outer membrane lipoprotein Blc, at 103,874 to 104,401
GFF94
GFF95 - hypothetical protein, at 104,551 to 104,985
GFF95
GFF96 - hypothetical protein, at 105,061 to 105,501
GFF96
GFF97 - Guanidinium exporter, at 105,597 to 105,914
GFF97
GFF98 - Ribosomal small subunit pseudouridine synthase A, at 105,935 to 106,651
GFF98
Position (kb) 105
106 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 104.067 kb on + strand, within GFF94 at 104.067 kb on + strand, within GFF94 at 104.067 kb on + strand, within GFF94 at 104.067 kb on + strand, within GFF94 at 104.067 kb on + strand, within GFF94 at 104.067 kb on + strand, within GFF94 at 104.067 kb on + strand, within GFF94 at 104.067 kb on + strand, within GFF94 at 104.067 kb on + strand, within GFF94 at 104.067 kb on + strand, within GFF94 at 104.068 kb on - strand, within GFF94 at 104.068 kb on - strand, within GFF94 at 104.068 kb on - strand, within GFF94 at 104.068 kb on - strand, within GFF94 at 104.068 kb on - strand, within GFF94 at 104.068 kb on - strand, within GFF94 at 104.068 kb on - strand, within GFF94 at 104.073 kb on + strand, within GFF94 at 104.073 kb on + strand, within GFF94 at 104.073 kb on + strand, within GFF94 at 104.074 kb on - strand, within GFF94 at 104.074 kb on - strand, within GFF94 at 104.074 kb on - strand, within GFF94 at 104.076 kb on + strand, within GFF94 at 104.077 kb on - strand, within GFF94 at 104.077 kb on - strand, within GFF94 at 104.077 kb on - strand, within GFF94 at 104.084 kb on - strand, within GFF94 at 104.103 kb on + strand, within GFF94 at 104.103 kb on + strand, within GFF94 at 104.103 kb on + strand, within GFF94 at 104.103 kb on + strand, within GFF94 at 104.103 kb on + strand, within GFF94 at 104.103 kb on + strand, within GFF94 at 104.103 kb on + strand, within GFF94 at 104.103 kb on + strand, within GFF94 at 104.104 kb on - strand, within GFF94 at 104.104 kb on - strand, within GFF94 at 104.274 kb on + strand, within GFF94 at 104.274 kb on + strand, within GFF94 at 104.274 kb on + strand, within GFF94 at 104.274 kb on + strand, within GFF94 at 104.274 kb on + strand, within GFF94 at 104.274 kb on + strand, within GFF94 at 104.275 kb on - strand, within GFF94 at 104.275 kb on - strand, within GFF94 at 104.275 kb on - strand, within GFF94 at 104.335 kb on - strand, within GFF94 at 104.349 kb on + strand at 104.349 kb on + strand at 104.349 kb on + strand at 104.464 kb on + strand at 104.464 kb on + strand at 104.465 kb on - strand at 104.468 kb on + strand at 104.468 kb on + strand at 104.469 kb on - strand at 104.469 kb on - strand at 104.469 kb on - strand at 104.473 kb on + strand at 104.473 kb on + strand at 104.473 kb on + strand at 104.473 kb on + strand at 104.473 kb on + strand at 104.473 kb on + strand at 104.473 kb on + strand at 104.473 kb on + strand at 104.473 kb on + strand at 104.474 kb on - strand at 104.474 kb on - strand at 104.474 kb on - strand at 104.474 kb on - strand at 104.479 kb on + strand at 104.479 kb on + strand at 104.479 kb on + strand at 104.479 kb on + strand at 104.479 kb on + strand at 104.479 kb on + strand at 104.479 kb on + strand at 104.479 kb on + strand at 104.479 kb on + strand at 104.479 kb on + strand at 104.479 kb on + strand at 104.479 kb on + strand at 104.480 kb on - strand at 104.480 kb on - strand at 104.480 kb on - strand at 104.480 kb on - strand at 104.480 kb on - strand at 104.481 kb on + strand at 104.482 kb on - strand at 104.482 kb on - strand at 104.489 kb on - strand at 104.495 kb on + strand at 104.495 kb on + strand at 104.495 kb on + strand at 104.496 kb on - strand at 104.496 kb on - strand at 104.497 kb on + strand at 104.497 kb on + strand at 104.497 kb on + strand at 104.498 kb on - strand at 104.519 kb on - strand at 104.519 kb on - strand at 104.523 kb on + strand at 104.523 kb on + strand at 104.528 kb on + strand at 104.528 kb on + strand at 104.528 kb on + strand at 104.528 kb on + strand at 104.582 kb on + strand at 104.582 kb on + strand at 104.583 kb on - strand at 104.665 kb on - strand, within GFF95 at 104.665 kb on - strand, within GFF95 at 104.672 kb on + strand, within GFF95 at 104.736 kb on + strand, within GFF95 at 104.736 kb on + strand, within GFF95 at 104.811 kb on + strand, within GFF95 at 104.812 kb on - strand, within GFF95 at 104.823 kb on + strand, within GFF95 at 104.824 kb on - strand, within GFF95 at 104.891 kb on + strand, within GFF95 at 104.908 kb on + strand, within GFF95 at 104.908 kb on + strand, within GFF95 at 104.909 kb on - strand, within GFF95 at 104.983 kb on + strand at 104.983 kb on + strand at 104.996 kb on + strand at 105.011 kb on + strand at 105.011 kb on + strand at 105.012 kb on - strand at 105.021 kb on + strand at 105.021 kb on + strand at 105.022 kb on - strand at 105.022 kb on - strand at 105.022 kb on - strand at 105.022 kb on - strand at 105.022 kb on - strand at 105.126 kb on + strand, within GFF96 at 105.127 kb on - strand, within GFF96 at 105.129 kb on + strand, within GFF96 at 105.129 kb on + strand, within GFF96 at 105.129 kb on + strand, within GFF96 at 105.130 kb on - strand, within GFF96 at 105.227 kb on + strand, within GFF96 at 105.228 kb on - strand, within GFF96 at 105.500 kb on - strand at 105.636 kb on - strand, within GFF97 at 105.680 kb on + strand, within GFF97 at 105.680 kb on + strand, within GFF97 at 105.680 kb on + strand, within GFF97 at 105.680 kb on + strand, within GFF97 at 105.680 kb on + strand, within GFF97 at 105.681 kb on - strand, within GFF97 at 105.681 kb on - strand, within GFF97 at 105.681 kb on - strand, within GFF97 at 105.681 kb on - strand, within GFF97 at 105.681 kb on - strand, within GFF97 at 105.684 kb on + strand, within GFF97 at 105.684 kb on + strand, within GFF97 at 105.739 kb on + strand, within GFF97 at 105.739 kb on + strand, within GFF97 at 105.739 kb on + strand, within GFF97 at 105.739 kb on + strand, within GFF97 at 105.848 kb on + strand, within GFF97 at 105.849 kb on - strand, within GFF97 at 105.849 kb on - strand, within GFF97 at 105.849 kb on - strand, within GFF97 at 105.850 kb on + strand, within GFF97 at 105.850 kb on + strand, within GFF97 at 105.850 kb on + strand, within GFF97 at 105.850 kb on + strand, within GFF97 at 105.850 kb on + strand, within GFF97 at 105.850 kb on + strand, within GFF97 at 105.850 kb on + strand, within GFF97 at 105.851 kb on - strand, within GFF97 at 105.851 kb on - strand, within GFF97 at 105.851 kb on - strand, within GFF97 at 105.851 kb on - strand, within GFF97 at 105.851 kb on - strand, within GFF97 at 105.894 kb on + strand at 105.894 kb on + strand at 105.894 kb on + strand at 105.894 kb on + strand at 105.894 kb on + strand at 105.895 kb on - strand at 105.895 kb on - strand at 105.895 kb on - strand at 105.900 kb on + strand at 105.900 kb on + strand at 105.901 kb on - strand at 105.901 kb on - strand at 105.901 kb on - strand at 105.904 kb on - strand at 105.904 kb on - strand at 105.904 kb on - strand at 105.953 kb on + strand at 105.953 kb on + strand at 105.953 kb on + strand at 105.954 kb on - strand at 105.954 kb on - strand at 105.954 kb on - strand at 105.954 kb on - strand at 106.027 kb on + strand, within GFF98 at 106.028 kb on - strand, within GFF98 at 106.044 kb on - strand, within GFF98 at 106.044 kb on - strand, within GFF98 at 106.086 kb on + strand, within GFF98 at 106.086 kb on + strand, within GFF98 at 106.086 kb on + strand, within GFF98 at 106.087 kb on - strand, within GFF98 at 106.087 kb on - strand, within GFF98 at 106.087 kb on - strand, within GFF98 at 106.113 kb on - strand, within GFF98 at 106.113 kb on - strand, within GFF98 at 106.113 kb on - strand, within GFF98 at 106.113 kb on - strand, within GFF98 at 106.239 kb on + strand, within GFF98 at 106.239 kb on + strand, within GFF98 at 106.239 kb on + strand, within GFF98 at 106.240 kb on - strand, within GFF98 at 106.240 kb on - strand, within GFF98 at 106.242 kb on - strand, within GFF98 at 106.242 kb on - strand, within GFF98 at 106.242 kb on - strand, within GFF98 at 106.242 kb on - strand, within GFF98 at 106.250 kb on + strand, within GFF98 at 106.251 kb on - strand, within GFF98 at 106.251 kb on - strand, within GFF98 at 106.251 kb on - strand, within GFF98 at 106.251 kb on - strand, within GFF98 at 106.251 kb on - strand, within GFF98 at 106.251 kb on - strand, within GFF98 at 106.281 kb on - strand, within GFF98 at 106.281 kb on - strand, within GFF98 at 106.281 kb on - strand, within GFF98 at 106.281 kb on - strand, within GFF98 at 106.283 kb on - strand, within GFF98 at 106.283 kb on - strand, within GFF98 at 106.305 kb on - strand, within GFF98 at 106.321 kb on + strand, within GFF98 at 106.322 kb on - strand, within GFF98 at 106.343 kb on - strand, within GFF98 at 106.384 kb on + strand, within GFF98 at 106.385 kb on - strand, within GFF98 at 106.385 kb on - strand, within GFF98 at 106.386 kb on + strand, within GFF98 at 106.386 kb on + strand, within GFF98 at 106.386 kb on + strand, within GFF98 at 106.387 kb on - strand, within GFF98 at 106.387 kb on - strand, within GFF98 at 106.387 kb on - strand, within GFF98 at 106.387 kb on - strand, within GFF98 at 106.387 kb on - strand, within GFF98 at 106.387 kb on - strand, within GFF98 at 106.387 kb on - strand, within GFF98 at 106.387 kb on - strand, within GFF98 at 106.387 kb on - strand, within GFF98 at 106.411 kb on + strand, within GFF98 at 106.412 kb on - strand, within GFF98 at 106.417 kb on + strand, within GFF98 at 106.417 kb on + strand, within GFF98 at 106.418 kb on - strand, within GFF98 at 106.418 kb on - strand, within GFF98 at 106.418 kb on - strand, within GFF98 at 106.426 kb on - strand, within GFF98 at 106.452 kb on + strand, within GFF98 at 106.452 kb on + strand, within GFF98 at 106.452 kb on + strand, within GFF98 at 106.453 kb on - strand, within GFF98 at 106.453 kb on - strand, within GFF98 at 106.453 kb on - strand, within GFF98 at 106.453 kb on - strand, within GFF98 at 106.456 kb on + strand, within GFF98 at 106.456 kb on + strand, within GFF98 at 106.456 kb on + strand, within GFF98 at 106.456 kb on + strand, within GFF98 at 106.456 kb on + strand, within GFF98 at 106.456 kb on + strand, within GFF98 at 106.456 kb on + strand, within GFF98 at 106.456 kb on + strand, within GFF98 at 106.456 kb on + strand, within GFF98 at 106.457 kb on - strand, within GFF98 at 106.457 kb on - strand, within GFF98 at 106.457 kb on - strand, within GFF98 at 106.457 kb on - strand, within GFF98 at 106.457 kb on - strand, within GFF98 at 106.457 kb on - strand, within GFF98 at 106.457 kb on - strand, within GFF98 at 106.457 kb on - strand, within GFF98 at 106.457 kb on - strand, within GFF98 at 106.457 kb on - strand, within GFF98 at 106.457 kb on - strand, within GFF98 at 106.457 kb on - strand, within GFF98 at 106.457 kb on - strand, within GFF98
Per-strain Table
Position Strand Gene LocusTag Fraction dNMS no carbon remove 104,067 + GFF94 0.37 +0.5 104,067 + GFF94 0.37 -0.5 104,067 + GFF94 0.37 +1.1 104,067 + GFF94 0.37 +0.6 104,067 + GFF94 0.37 -2.2 104,067 + GFF94 0.37 -0.8 104,067 + GFF94 0.37 +0.7 104,067 + GFF94 0.37 -0.8 104,067 + GFF94 0.37 +0.1 104,067 + GFF94 0.37 +0.2 104,068 - GFF94 0.37 +1.1 104,068 - GFF94 0.37 -0.8 104,068 - GFF94 0.37 -0.3 104,068 - GFF94 0.37 -0.9 104,068 - GFF94 0.37 +0.3 104,068 - GFF94 0.37 -0.6 104,068 - GFF94 0.37 +0.1 104,073 + GFF94 0.38 -0.6 104,073 + GFF94 0.38 -0.3 104,073 + GFF94 0.38 +0.7 104,074 - GFF94 0.38 -0.6 104,074 - GFF94 0.38 -0.1 104,074 - GFF94 0.38 -0.3 104,076 + GFF94 0.38 -0.3 104,077 - GFF94 0.38 +1.1 104,077 - GFF94 0.38 -1.4 104,077 - GFF94 0.38 +0.1 104,084 - GFF94 0.40 +1.8 104,103 + GFF94 0.43 +0.5 104,103 + GFF94 0.43 +1.0 104,103 + GFF94 0.43 -1.0 104,103 + GFF94 0.43 -0.3 104,103 + GFF94 0.43 -0.0 104,103 + GFF94 0.43 -0.1 104,103 + GFF94 0.43 -0.3 104,103 + GFF94 0.43 +0.1 104,104 - GFF94 0.44 -1.0 104,104 - GFF94 0.44 -1.0 104,274 + GFF94 0.76 +0.2 104,274 + GFF94 0.76 -0.0 104,274 + GFF94 0.76 +1.0 104,274 + GFF94 0.76 -0.3 104,274 + GFF94 0.76 -0.7 104,274 + GFF94 0.76 -1.0 104,275 - GFF94 0.76 -0.4 104,275 - GFF94 0.76 -0.3 104,275 - GFF94 0.76 +0.7 104,335 - GFF94 0.87 -1.0 104,349 + -2.0 104,349 + -0.0 104,349 + -0.6 104,464 + +0.3 104,464 + -0.7 104,465 - +0.3 104,468 + -0.2 104,468 + +0.1 104,469 - +0.1 104,469 - -0.3 104,469 - +0.2 104,473 + +0.6 104,473 + +0.4 104,473 + -1.0 104,473 + -1.1 104,473 + -0.8 104,473 + -1.6 104,473 + -0.3 104,473 + +1.0 104,473 + -0.6 104,474 - +0.5 104,474 - -0.3 104,474 - -0.5 104,474 - +0.7 104,479 + -1.0 104,479 + +0.8 104,479 + -0.4 104,479 + -1.1 104,479 + -0.4 104,479 + -0.5 104,479 + -1.0 104,479 + -1.2 104,479 + +0.6 104,479 + -1.6 104,479 + -1.3 104,479 + -2.3 104,480 - -0.3 104,480 - -0.0 104,480 - -0.2 104,480 - -1.8 104,480 - -1.8 104,481 + -1.8 104,482 - -1.1 104,482 - +0.1 104,489 - -0.0 104,495 + -0.1 104,495 + +0.5 104,495 + -1.8 104,496 - -0.0 104,496 - -2.0 104,497 + -0.0 104,497 + -0.6 104,497 + -1.5 104,498 - -1.0 104,519 - -0.4 104,519 - -1.0 104,523 + +0.6 104,523 + -1.0 104,528 + -0.6 104,528 + +1.6 104,528 + -0.5 104,528 + -0.0 104,582 + +0.5 104,582 + +0.6 104,583 - -1.0 104,665 - GFF95 0.26 -0.4 104,665 - GFF95 0.26 -1.8 104,672 + GFF95 0.28 -1.0 104,736 + GFF95 0.43 -0.7 104,736 + GFF95 0.43 -0.6 104,811 + GFF95 0.60 +0.3 104,812 - GFF95 0.60 +0.3 104,823 + GFF95 0.63 -1.3 104,824 - GFF95 0.63 +0.4 104,891 + GFF95 0.78 -0.0 104,908 + GFF95 0.82 +0.0 104,908 + GFF95 0.82 -1.3 104,909 - GFF95 0.82 -1.1 104,983 + +0.7 104,983 + +0.4 104,996 + +1.0 105,011 + +0.2 105,011 + -0.2 105,012 - +0.2 105,021 + -0.4 105,021 + -0.6 105,022 - -0.4 105,022 - -1.5 105,022 - -0.0 105,022 - -0.8 105,022 - -0.2 105,126 + GFF96 0.15 -0.2 105,127 - GFF96 0.15 -0.0 105,129 + GFF96 0.15 -0.0 105,129 + GFF96 0.15 -0.9 105,129 + GFF96 0.15 +1.0 105,130 - GFF96 0.16 +0.4 105,227 + GFF96 0.38 -0.5 105,228 - GFF96 0.38 -1.3 105,500 - -1.6 105,636 - GFF97 0.12 -1.3 105,680 + GFF97 0.26 -1.8 105,680 + GFF97 0.26 -1.3 105,680 + GFF97 0.26 -1.0 105,680 + GFF97 0.26 -0.8 105,680 + GFF97 0.26 -2.7 105,681 - GFF97 0.26 +1.3 105,681 - GFF97 0.26 -0.4 105,681 - GFF97 0.26 -0.0 105,681 - GFF97 0.26 -0.0 105,681 - GFF97 0.26 -1.4 105,684 + GFF97 0.27 +0.4 105,684 + GFF97 0.27 +0.7 105,739 + GFF97 0.45 -1.5 105,739 + GFF97 0.45 -1.0 105,739 + GFF97 0.45 -0.6 105,739 + GFF97 0.45 -0.1 105,848 + GFF97 0.79 -0.6 105,849 - GFF97 0.79 +1.0 105,849 - GFF97 0.79 +1.0 105,849 - GFF97 0.79 +1.2 105,850 + GFF97 0.80 -2.0 105,850 + GFF97 0.80 -0.6 105,850 + GFF97 0.80 +1.1 105,850 + GFF97 0.80 +1.0 105,850 + GFF97 0.80 -0.2 105,850 + GFF97 0.80 -1.3 105,850 + GFF97 0.80 -0.6 105,851 - GFF97 0.80 -0.3 105,851 - GFF97 0.80 -0.2 105,851 - GFF97 0.80 +0.1 105,851 - GFF97 0.80 +0.2 105,851 - GFF97 0.80 -0.0 105,894 + +0.2 105,894 + -1.2 105,894 + -1.6 105,894 + +0.7 105,894 + -0.0 105,895 - -0.0 105,895 - -0.3 105,895 - +0.1 105,900 + -2.2 105,900 + -1.3 105,901 - -0.7 105,901 - +0.8 105,901 - -1.0 105,904 - -0.3 105,904 - +0.1 105,904 - -1.0 105,953 + -2.2 105,953 + -0.8 105,953 + +0.4 105,954 - -1.5 105,954 - +0.2 105,954 - -0.2 105,954 - -0.0 106,027 + GFF98 0.13 -1.3 106,028 - GFF98 0.13 -1.3 106,044 - GFF98 0.15 +0.6 106,044 - GFF98 0.15 -0.6 106,086 + GFF98 0.21 +0.2 106,086 + GFF98 0.21 -0.8 106,086 + GFF98 0.21 -1.3 106,087 - GFF98 0.21 +0.1 106,087 - GFF98 0.21 -2.2 106,087 - GFF98 0.21 +0.1 106,113 - GFF98 0.25 -0.2 106,113 - GFF98 0.25 -0.8 106,113 - GFF98 0.25 -0.8 106,113 - GFF98 0.25 -0.0 106,239 + GFF98 0.42 +1.0 106,239 + GFF98 0.42 -1.0 106,239 + GFF98 0.42 -2.3 106,240 - GFF98 0.43 -0.6 106,240 - GFF98 0.43 -2.5 106,242 - GFF98 0.43 -0.0 106,242 - GFF98 0.43 -0.7 106,242 - GFF98 0.43 -3.1 106,242 - GFF98 0.43 -0.0 106,250 + GFF98 0.44 -0.7 106,251 - GFF98 0.44 +1.6 106,251 - GFF98 0.44 -1.2 106,251 - GFF98 0.44 -0.8 106,251 - GFF98 0.44 -0.9 106,251 - GFF98 0.44 -0.3 106,251 - GFF98 0.44 -1.0 106,281 - GFF98 0.48 +0.2 106,281 - GFF98 0.48 -0.8 106,281 - GFF98 0.48 -1.1 106,281 - GFF98 0.48 +0.4 106,283 - GFF98 0.49 +0.5 106,283 - GFF98 0.49 -2.0 106,305 - GFF98 0.52 -0.5 106,321 + GFF98 0.54 +1.2 106,322 - GFF98 0.54 -0.5 106,343 - GFF98 0.57 +0.9 106,384 + GFF98 0.63 -1.0 106,385 - GFF98 0.63 -0.5 106,385 - GFF98 0.63 -0.3 106,386 + GFF98 0.63 -1.0 106,386 + GFF98 0.63 -0.9 106,386 + GFF98 0.63 -0.6 106,387 - GFF98 0.63 -0.4 106,387 - GFF98 0.63 +0.2 106,387 - GFF98 0.63 -2.5 106,387 - GFF98 0.63 -1.4 106,387 - GFF98 0.63 -0.4 106,387 - GFF98 0.63 -0.3 106,387 - GFF98 0.63 -2.1 106,387 - GFF98 0.63 -0.3 106,387 - GFF98 0.63 -0.6 106,411 + GFF98 0.66 -1.2 106,412 - GFF98 0.67 +0.6 106,417 + GFF98 0.67 +0.2 106,417 + GFF98 0.67 -1.3 106,418 - GFF98 0.67 -1.0 106,418 - GFF98 0.67 -1.0 106,418 - GFF98 0.67 -0.0 106,426 - GFF98 0.68 -0.3 106,452 + GFF98 0.72 +0.7 106,452 + GFF98 0.72 -1.6 106,452 + GFF98 0.72 +0.8 106,453 - GFF98 0.72 +0.1 106,453 - GFF98 0.72 -0.6 106,453 - GFF98 0.72 -0.3 106,453 - GFF98 0.72 +0.3 106,456 + GFF98 0.73 -0.9 106,456 + GFF98 0.73 -0.0 106,456 + GFF98 0.73 -1.2 106,456 + GFF98 0.73 -1.2 106,456 + GFF98 0.73 -1.6 106,456 + GFF98 0.73 -1.6 106,456 + GFF98 0.73 -0.8 106,456 + GFF98 0.73 +0.1 106,456 + GFF98 0.73 -2.2 106,457 - GFF98 0.73 -0.8 106,457 - GFF98 0.73 -0.6 106,457 - GFF98 0.73 -1.0 106,457 - GFF98 0.73 -1.8 106,457 - GFF98 0.73 -0.4 106,457 - GFF98 0.73 -0.5 106,457 - GFF98 0.73 +0.8 106,457 - GFF98 0.73 -0.3 106,457 - GFF98 0.73 +1.9 106,457 - GFF98 0.73 -1.6 106,457 - GFF98 0.73 -0.0 106,457 - GFF98 0.73 +0.1 106,457 - GFF98 0.73 -1.3
Or see this region's nucleotide sequence