Experiment: dNMS no carbon
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF402 and GFF403 are separated by 57 nucleotides GFF403 and GFF404 are separated by 1 nucleotides GFF404 and GFF405 are separated by 95 nucleotides GFF405 and GFF406 overlap by 4 nucleotides
GFF402 - Sulfate transport system permease protein CysT, at 448,247 to 449,080
GFF402
GFF403 - Sulfate transport system permease protein CysW, at 449,138 to 450,028
GFF403
GFF404 - Sulfate/thiosulfate import ATP-binding protein CysA, at 450,030 to 451,007
GFF404
GFF405 - Toxin FitB, at 451,103 to 451,522
GFF405
GFF406 - Antitoxin FitA, at 451,519 to 451,758
GFF406
Position (kb) 450
451
452 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 449.079 kb on - strand at 449.100 kb on + strand at 449.100 kb on + strand at 449.101 kb on - strand at 449.111 kb on - strand at 449.127 kb on + strand at 449.127 kb on + strand at 449.128 kb on - strand at 449.131 kb on + strand at 449.131 kb on + strand at 449.131 kb on + strand at 449.131 kb on + strand at 449.132 kb on - strand at 449.132 kb on - strand at 449.132 kb on - strand at 449.132 kb on - strand at 449.180 kb on + strand at 449.181 kb on - strand at 449.284 kb on + strand, within GFF403 at 449.315 kb on + strand, within GFF403 at 449.315 kb on + strand, within GFF403 at 449.316 kb on - strand, within GFF403 at 449.316 kb on - strand, within GFF403 at 449.316 kb on - strand, within GFF403 at 449.319 kb on + strand, within GFF403 at 449.319 kb on + strand, within GFF403 at 449.320 kb on - strand, within GFF403 at 449.320 kb on - strand, within GFF403 at 449.320 kb on - strand, within GFF403 at 449.320 kb on - strand, within GFF403 at 449.320 kb on - strand, within GFF403 at 449.404 kb on - strand, within GFF403 at 449.404 kb on - strand, within GFF403 at 449.587 kb on - strand, within GFF403 at 449.587 kb on - strand, within GFF403 at 449.885 kb on + strand, within GFF403 at 449.885 kb on + strand, within GFF403 at 449.894 kb on + strand, within GFF403 at 449.894 kb on + strand, within GFF403 at 449.894 kb on + strand, within GFF403 at 449.896 kb on + strand, within GFF403 at 449.896 kb on + strand, within GFF403 at 449.896 kb on + strand, within GFF403 at 449.896 kb on + strand, within GFF403 at 449.897 kb on - strand, within GFF403 at 449.900 kb on + strand, within GFF403 at 449.900 kb on + strand, within GFF403 at 449.969 kb on + strand at 449.969 kb on + strand at 449.970 kb on - strand at 449.970 kb on - strand at 450.026 kb on + strand at 450.026 kb on + strand at 450.038 kb on + strand at 450.038 kb on + strand at 450.039 kb on - strand at 450.043 kb on + strand at 450.074 kb on + strand at 450.075 kb on - strand at 450.164 kb on - strand, within GFF404 at 450.170 kb on + strand, within GFF404 at 450.221 kb on - strand, within GFF404 at 450.400 kb on + strand, within GFF404 at 450.601 kb on + strand, within GFF404 at 450.601 kb on + strand, within GFF404 at 450.602 kb on - strand, within GFF404 at 450.602 kb on - strand, within GFF404 at 450.644 kb on + strand, within GFF404 at 450.703 kb on - strand, within GFF404 at 450.729 kb on + strand, within GFF404 at 450.748 kb on + strand, within GFF404 at 450.748 kb on + strand, within GFF404 at 450.748 kb on + strand, within GFF404 at 450.748 kb on + strand, within GFF404 at 450.748 kb on + strand, within GFF404 at 450.749 kb on - strand, within GFF404 at 450.749 kb on - strand, within GFF404 at 450.749 kb on - strand, within GFF404 at 450.792 kb on + strand, within GFF404 at 450.792 kb on + strand, within GFF404 at 450.793 kb on - strand, within GFF404 at 450.793 kb on - strand, within GFF404 at 450.793 kb on - strand, within GFF404 at 450.793 kb on - strand, within GFF404 at 450.830 kb on + strand, within GFF404 at 450.830 kb on + strand, within GFF404 at 450.849 kb on + strand, within GFF404 at 450.849 kb on + strand, within GFF404 at 450.849 kb on + strand, within GFF404 at 450.849 kb on + strand, within GFF404 at 450.849 kb on + strand, within GFF404 at 450.849 kb on + strand, within GFF404 at 450.849 kb on + strand, within GFF404 at 450.849 kb on + strand, within GFF404 at 450.849 kb on + strand, within GFF404 at 450.849 kb on + strand, within GFF404 at 450.849 kb on + strand, within GFF404 at 450.849 kb on + strand, within GFF404 at 450.850 kb on - strand, within GFF404 at 450.850 kb on - strand, within GFF404 at 450.850 kb on - strand, within GFF404 at 450.850 kb on - strand, within GFF404 at 450.850 kb on - strand, within GFF404 at 450.850 kb on - strand, within GFF404 at 450.909 kb on + strand, within GFF404 at 450.909 kb on + strand, within GFF404 at 450.909 kb on + strand, within GFF404 at 450.909 kb on + strand, within GFF404 at 450.910 kb on - strand at 450.910 kb on - strand at 450.910 kb on - strand at 450.910 kb on - strand at 450.910 kb on - strand at 450.910 kb on - strand at 450.910 kb on - strand at 450.910 kb on - strand at 450.910 kb on - strand at 450.956 kb on + strand at 450.957 kb on - strand at 450.975 kb on + strand at 450.975 kb on + strand at 450.975 kb on + strand at 450.976 kb on - strand at 450.976 kb on - strand at 451.010 kb on + strand at 451.011 kb on - strand at 451.062 kb on + strand at 451.078 kb on + strand at 451.078 kb on + strand at 451.105 kb on - strand at 451.121 kb on - strand at 451.163 kb on - strand, within GFF405 at 451.206 kb on + strand, within GFF405 at 451.206 kb on + strand, within GFF405 at 451.207 kb on - strand, within GFF405 at 451.207 kb on - strand, within GFF405 at 451.207 kb on - strand, within GFF405 at 451.207 kb on - strand, within GFF405 at 451.207 kb on - strand, within GFF405 at 451.266 kb on + strand, within GFF405 at 451.266 kb on + strand, within GFF405 at 451.266 kb on + strand, within GFF405 at 451.267 kb on - strand, within GFF405 at 451.267 kb on - strand, within GFF405 at 451.267 kb on - strand, within GFF405 at 451.267 kb on - strand, within GFF405 at 451.267 kb on - strand, within GFF405 at 451.267 kb on - strand, within GFF405 at 451.281 kb on - strand, within GFF405 at 451.281 kb on - strand, within GFF405 at 451.281 kb on - strand, within GFF405 at 451.281 kb on - strand, within GFF405 at 451.300 kb on + strand, within GFF405 at 451.301 kb on - strand, within GFF405 at 451.301 kb on - strand, within GFF405 at 451.301 kb on - strand, within GFF405 at 451.301 kb on - strand, within GFF405 at 451.314 kb on - strand, within GFF405 at 451.346 kb on + strand, within GFF405 at 451.346 kb on + strand, within GFF405 at 451.347 kb on - strand, within GFF405 at 451.347 kb on - strand, within GFF405 at 451.347 kb on - strand, within GFF405 at 451.347 kb on - strand, within GFF405 at 451.347 kb on - strand, within GFF405 at 451.347 kb on - strand, within GFF405 at 451.347 kb on - strand, within GFF405 at 451.347 kb on - strand, within GFF405 at 451.374 kb on - strand, within GFF405 at 451.374 kb on - strand, within GFF405 at 451.415 kb on - strand, within GFF405 at 451.415 kb on - strand, within GFF405 at 451.423 kb on - strand, within GFF405 at 451.423 kb on - strand, within GFF405 at 451.423 kb on - strand, within GFF405 at 451.423 kb on - strand, within GFF405 at 451.461 kb on - strand, within GFF405 at 451.507 kb on + strand at 451.507 kb on + strand at 451.508 kb on - strand at 451.508 kb on - strand at 451.508 kb on - strand at 451.508 kb on - strand at 451.508 kb on - strand at 451.508 kb on - strand at 451.512 kb on - strand at 451.512 kb on - strand at 451.515 kb on - strand at 451.874 kb on + strand at 451.875 kb on - strand at 451.875 kb on - strand at 451.875 kb on - strand at 451.899 kb on - strand at 451.899 kb on - strand at 451.906 kb on - strand at 451.916 kb on - strand at 451.916 kb on - strand at 451.916 kb on - strand at 451.916 kb on - strand at 451.916 kb on - strand at 451.916 kb on - strand at 451.918 kb on + strand at 451.918 kb on + strand at 451.927 kb on + strand at 451.927 kb on + strand at 451.927 kb on + strand at 451.928 kb on - strand at 451.928 kb on - strand at 451.928 kb on - strand at 451.928 kb on - strand at 451.928 kb on - strand at 451.928 kb on - strand at 451.928 kb on - strand at 451.928 kb on - strand at 451.928 kb on - strand at 451.928 kb on - strand at 451.948 kb on - strand at 451.961 kb on + strand at 451.961 kb on + strand at 451.962 kb on - strand at 451.962 kb on - strand at 451.962 kb on - strand at 451.980 kb on + strand at 451.981 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction dNMS no carbon remove 449,079 - -1.9 449,100 + -0.2 449,100 + -0.5 449,101 - -0.4 449,111 - -1.3 449,127 + -1.0 449,127 + +0.4 449,128 - -2.3 449,131 + -0.9 449,131 + -1.1 449,131 + -0.1 449,131 + +0.1 449,132 - +0.9 449,132 - -1.1 449,132 - -0.4 449,132 - -1.3 449,180 + +0.2 449,181 - +0.4 449,284 + GFF403 0.16 -2.3 449,315 + GFF403 0.20 -1.3 449,315 + GFF403 0.20 -2.8 449,316 - GFF403 0.20 -0.8 449,316 - GFF403 0.20 +0.0 449,316 - GFF403 0.20 -0.4 449,319 + GFF403 0.20 -1.1 449,319 + GFF403 0.20 +0.2 449,320 - GFF403 0.20 -1.5 449,320 - GFF403 0.20 -0.4 449,320 - GFF403 0.20 -0.5 449,320 - GFF403 0.20 +1.3 449,320 - GFF403 0.20 -0.1 449,404 - GFF403 0.30 -0.8 449,404 - GFF403 0.30 -1.7 449,587 - GFF403 0.50 -1.1 449,587 - GFF403 0.50 +0.2 449,885 + GFF403 0.84 +0.4 449,885 + GFF403 0.84 -1.1 449,894 + GFF403 0.85 -0.1 449,894 + GFF403 0.85 -0.5 449,894 + GFF403 0.85 +0.2 449,896 + GFF403 0.85 -1.1 449,896 + GFF403 0.85 -0.6 449,896 + GFF403 0.85 -1.7 449,896 + GFF403 0.85 -0.7 449,897 - GFF403 0.85 -0.3 449,900 + GFF403 0.86 -0.7 449,900 + GFF403 0.86 -0.6 449,969 + -0.7 449,969 + +0.7 449,970 - +0.1 449,970 - -1.0 450,026 + -1.6 450,026 + -1.7 450,038 + -0.8 450,038 + -1.3 450,039 - -0.1 450,043 + +1.1 450,074 + +0.6 450,075 - -0.5 450,164 - GFF404 0.14 -1.6 450,170 + GFF404 0.14 -0.8 450,221 - GFF404 0.20 -0.4 450,400 + GFF404 0.38 -1.9 450,601 + GFF404 0.58 -0.7 450,601 + GFF404 0.58 +0.8 450,602 - GFF404 0.58 -1.4 450,602 - GFF404 0.58 +0.1 450,644 + GFF404 0.63 +0.6 450,703 - GFF404 0.69 -1.9 450,729 + GFF404 0.71 +0.2 450,748 + GFF404 0.73 -0.2 450,748 + GFF404 0.73 -1.5 450,748 + GFF404 0.73 -0.7 450,748 + GFF404 0.73 -0.9 450,748 + GFF404 0.73 -0.1 450,749 - GFF404 0.74 -2.3 450,749 - GFF404 0.74 +0.6 450,749 - GFF404 0.74 -0.1 450,792 + GFF404 0.78 -0.6 450,792 + GFF404 0.78 -1.0 450,793 - GFF404 0.78 -1.1 450,793 - GFF404 0.78 +0.7 450,793 - GFF404 0.78 -0.7 450,793 - GFF404 0.78 -1.1 450,830 + GFF404 0.82 -0.7 450,830 + GFF404 0.82 -0.1 450,849 + GFF404 0.84 -0.9 450,849 + GFF404 0.84 +0.9 450,849 + GFF404 0.84 +0.2 450,849 + GFF404 0.84 -1.3 450,849 + GFF404 0.84 -0.6 450,849 + GFF404 0.84 -1.1 450,849 + GFF404 0.84 +0.1 450,849 + GFF404 0.84 -0.2 450,849 + GFF404 0.84 -0.5 450,849 + GFF404 0.84 -0.1 450,849 + GFF404 0.84 -0.1 450,849 + GFF404 0.84 +1.5 450,850 - GFF404 0.84 -1.4 450,850 - GFF404 0.84 -1.4 450,850 - GFF404 0.84 -0.2 450,850 - GFF404 0.84 -1.9 450,850 - GFF404 0.84 -1.3 450,850 - GFF404 0.84 +0.5 450,909 + GFF404 0.90 -0.1 450,909 + GFF404 0.90 -1.7 450,909 + GFF404 0.90 -0.7 450,909 + GFF404 0.90 -1.4 450,910 - -1.7 450,910 - -1.4 450,910 - -0.9 450,910 - -0.8 450,910 - -2.1 450,910 - -1.9 450,910 - -0.2 450,910 - +0.3 450,910 - -0.1 450,956 + -0.5 450,957 - -0.6 450,975 + -0.1 450,975 + -0.6 450,975 + +0.3 450,976 - +0.5 450,976 - -0.7 451,010 + -0.4 451,011 - +0.7 451,062 + -0.3 451,078 + -1.0 451,078 + -1.1 451,105 - -0.3 451,121 - -1.0 451,163 - GFF405 0.14 +0.1 451,206 + GFF405 0.25 +0.1 451,206 + GFF405 0.25 -0.1 451,207 - GFF405 0.25 +0.1 451,207 - GFF405 0.25 +0.4 451,207 - GFF405 0.25 -0.1 451,207 - GFF405 0.25 -0.7 451,207 - GFF405 0.25 -0.6 451,266 + GFF405 0.39 -1.1 451,266 + GFF405 0.39 -2.3 451,266 + GFF405 0.39 -0.1 451,267 - GFF405 0.39 -1.9 451,267 - GFF405 0.39 -1.9 451,267 - GFF405 0.39 -1.5 451,267 - GFF405 0.39 -1.3 451,267 - GFF405 0.39 -0.1 451,267 - GFF405 0.39 +0.3 451,281 - GFF405 0.42 +0.3 451,281 - GFF405 0.42 +0.9 451,281 - GFF405 0.42 +0.1 451,281 - GFF405 0.42 -0.1 451,300 + GFF405 0.47 -1.7 451,301 - GFF405 0.47 -0.7 451,301 - GFF405 0.47 -0.4 451,301 - GFF405 0.47 -1.9 451,301 - GFF405 0.47 -0.9 451,314 - GFF405 0.50 +0.6 451,346 + GFF405 0.58 -1.1 451,346 + GFF405 0.58 +0.0 451,347 - GFF405 0.58 -1.9 451,347 - GFF405 0.58 +0.7 451,347 - GFF405 0.58 -1.1 451,347 - GFF405 0.58 -0.9 451,347 - GFF405 0.58 +0.7 451,347 - GFF405 0.58 -0.7 451,347 - GFF405 0.58 -1.1 451,347 - GFF405 0.58 +0.1 451,374 - GFF405 0.65 -1.1 451,374 - GFF405 0.65 -1.9 451,415 - GFF405 0.74 -0.7 451,415 - GFF405 0.74 -0.8 451,423 - GFF405 0.76 +0.6 451,423 - GFF405 0.76 -0.3 451,423 - GFF405 0.76 -0.4 451,423 - GFF405 0.76 +1.2 451,461 - GFF405 0.85 -1.1 451,507 + +0.1 451,507 + +0.5 451,508 - -0.7 451,508 - -0.8 451,508 - -1.5 451,508 - +0.5 451,508 - +0.2 451,508 - -2.5 451,512 - -0.1 451,512 - -0.3 451,515 - -0.7 451,874 + -1.5 451,875 - +1.8 451,875 - -0.8 451,875 - -1.1 451,899 - -0.4 451,899 - -0.7 451,906 - +0.3 451,916 - -0.5 451,916 - -0.4 451,916 - +0.5 451,916 - +0.4 451,916 - -1.8 451,916 - -0.1 451,918 + -1.1 451,918 + -0.1 451,927 + -1.1 451,927 + +1.4 451,927 + -0.8 451,928 - +0.6 451,928 - -2.2 451,928 - -1.9 451,928 - -0.4 451,928 - -0.9 451,928 - -2.5 451,928 - -0.2 451,928 - -0.3 451,928 - -1.0 451,928 - +0.4 451,948 - -0.1 451,961 + -0.7 451,961 + +0.4 451,962 - -0.5 451,962 - -1.0 451,962 - -1.1 451,980 + -1.9 451,981 - -0.4
Or see this region's nucleotide sequence