Experiment: dNMS no carbon
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2039 and GFF2040 are separated by 4 nucleotides GFF2040 and GFF2041 are separated by 30 nucleotides GFF2041 and GFF2042 are separated by 20 nucleotides
GFF2039 - Thiol:disulfide interchange protein DsbD, at 80,005 to 81,816
GFF2039
GFF2040 - Divalent-cation tolerance protein CutA, at 81,821 to 82,156
GFF2040
GFF2041 - hypothetical protein, at 82,187 to 82,642
GFF2041
GFF2042 - CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydr ase reductase, at 82,663 to 83,673
GFF2042
Position (kb) 82
83 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 81.794 kb on - strand at 81.862 kb on - strand, within GFF2040 at 81.893 kb on + strand, within GFF2040 at 81.893 kb on + strand, within GFF2040 at 81.893 kb on + strand, within GFF2040 at 81.893 kb on + strand, within GFF2040 at 81.893 kb on + strand, within GFF2040 at 81.894 kb on - strand, within GFF2040 at 81.894 kb on - strand, within GFF2040 at 81.894 kb on - strand, within GFF2040 at 81.894 kb on - strand, within GFF2040 at 81.912 kb on + strand, within GFF2040 at 81.913 kb on - strand, within GFF2040 at 81.928 kb on + strand, within GFF2040 at 81.929 kb on - strand, within GFF2040 at 81.929 kb on - strand, within GFF2040 at 81.951 kb on + strand, within GFF2040 at 81.971 kb on - strand, within GFF2040 at 82.020 kb on + strand, within GFF2040 at 82.024 kb on + strand, within GFF2040 at 82.024 kb on + strand, within GFF2040 at 82.024 kb on + strand, within GFF2040 at 82.024 kb on + strand, within GFF2040 at 82.025 kb on - strand, within GFF2040 at 82.046 kb on - strand, within GFF2040 at 82.046 kb on - strand, within GFF2040 at 82.073 kb on - strand, within GFF2040 at 82.073 kb on - strand, within GFF2040 at 82.090 kb on + strand, within GFF2040 at 82.090 kb on + strand, within GFF2040 at 82.090 kb on + strand, within GFF2040 at 82.124 kb on - strand at 82.133 kb on + strand at 82.134 kb on - strand at 82.136 kb on - strand at 82.136 kb on - strand at 82.136 kb on - strand at 82.136 kb on - strand at 82.207 kb on + strand at 82.207 kb on + strand at 82.207 kb on + strand at 82.208 kb on - strand at 82.208 kb on - strand at 82.208 kb on - strand at 82.212 kb on + strand at 82.212 kb on + strand at 82.212 kb on + strand at 82.212 kb on + strand at 82.213 kb on - strand at 82.213 kb on - strand at 82.237 kb on - strand, within GFF2041 at 82.265 kb on + strand, within GFF2041 at 82.286 kb on + strand, within GFF2041 at 82.286 kb on + strand, within GFF2041 at 82.286 kb on + strand, within GFF2041 at 82.434 kb on + strand, within GFF2041 at 82.434 kb on + strand, within GFF2041 at 82.435 kb on - strand, within GFF2041 at 82.435 kb on - strand, within GFF2041 at 82.435 kb on - strand, within GFF2041 at 82.435 kb on - strand, within GFF2041 at 82.435 kb on - strand, within GFF2041 at 82.435 kb on - strand, within GFF2041 at 82.435 kb on - strand, within GFF2041 at 82.456 kb on + strand, within GFF2041 at 82.542 kb on - strand, within GFF2041 at 82.612 kb on + strand at 82.612 kb on + strand at 82.612 kb on + strand at 82.612 kb on + strand at 82.612 kb on + strand at 82.612 kb on + strand at 82.613 kb on - strand at 82.613 kb on - strand at 82.613 kb on - strand at 82.613 kb on - strand at 82.613 kb on - strand at 82.613 kb on - strand at 82.613 kb on - strand at 82.654 kb on + strand at 82.654 kb on + strand at 82.654 kb on + strand at 82.662 kb on + strand at 82.662 kb on + strand at 82.662 kb on + strand at 82.662 kb on + strand at 82.663 kb on - strand at 82.696 kb on - strand at 82.696 kb on - strand at 82.762 kb on + strand at 82.763 kb on - strand at 82.773 kb on + strand, within GFF2042 at 82.805 kb on + strand, within GFF2042 at 82.806 kb on - strand, within GFF2042 at 82.806 kb on - strand, within GFF2042 at 82.835 kb on - strand, within GFF2042 at 83.009 kb on + strand, within GFF2042 at 83.009 kb on + strand, within GFF2042 at 83.009 kb on + strand, within GFF2042 at 83.009 kb on + strand, within GFF2042 at 83.009 kb on + strand, within GFF2042 at 83.009 kb on + strand, within GFF2042 at 83.010 kb on - strand, within GFF2042 at 83.010 kb on - strand, within GFF2042 at 83.010 kb on - strand, within GFF2042 at 83.010 kb on - strand, within GFF2042 at 83.010 kb on - strand, within GFF2042 at 83.010 kb on - strand, within GFF2042 at 83.010 kb on - strand, within GFF2042 at 83.010 kb on - strand, within GFF2042 at 83.055 kb on + strand, within GFF2042 at 83.056 kb on - strand, within GFF2042 at 83.056 kb on - strand, within GFF2042 at 83.068 kb on + strand, within GFF2042 at 83.068 kb on + strand, within GFF2042 at 83.068 kb on + strand, within GFF2042 at 83.068 kb on + strand, within GFF2042 at 83.068 kb on + strand, within GFF2042 at 83.068 kb on + strand, within GFF2042 at 83.069 kb on - strand, within GFF2042 at 83.069 kb on - strand, within GFF2042 at 83.069 kb on - strand, within GFF2042 at 83.069 kb on - strand, within GFF2042 at 83.069 kb on - strand, within GFF2042 at 83.069 kb on - strand, within GFF2042 at 83.069 kb on - strand, within GFF2042 at 83.142 kb on + strand, within GFF2042 at 83.154 kb on + strand, within GFF2042 at 83.219 kb on + strand, within GFF2042 at 83.220 kb on - strand, within GFF2042 at 83.226 kb on + strand, within GFF2042 at 83.283 kb on + strand, within GFF2042 at 83.284 kb on - strand, within GFF2042 at 83.284 kb on - strand, within GFF2042 at 83.284 kb on - strand, within GFF2042 at 83.284 kb on - strand, within GFF2042 at 83.327 kb on + strand, within GFF2042 at 83.327 kb on + strand, within GFF2042 at 83.327 kb on + strand, within GFF2042 at 83.327 kb on + strand, within GFF2042 at 83.328 kb on - strand, within GFF2042 at 83.328 kb on - strand, within GFF2042 at 83.328 kb on - strand, within GFF2042 at 83.396 kb on - strand, within GFF2042 at 83.399 kb on + strand, within GFF2042 at 83.399 kb on + strand, within GFF2042 at 83.399 kb on + strand, within GFF2042 at 83.399 kb on + strand, within GFF2042 at 83.399 kb on + strand, within GFF2042 at 83.400 kb on - strand, within GFF2042 at 83.400 kb on - strand, within GFF2042 at 83.400 kb on - strand, within GFF2042 at 83.400 kb on - strand, within GFF2042 at 83.400 kb on - strand, within GFF2042 at 83.400 kb on - strand, within GFF2042 at 83.400 kb on - strand, within GFF2042 at 83.400 kb on - strand, within GFF2042 at 83.400 kb on - strand, within GFF2042 at 83.400 kb on - strand, within GFF2042 at 83.400 kb on - strand, within GFF2042 at 83.400 kb on - strand, within GFF2042 at 83.400 kb on - strand, within GFF2042 at 83.400 kb on - strand, within GFF2042 at 83.400 kb on - strand, within GFF2042 at 83.400 kb on - strand, within GFF2042 at 83.400 kb on - strand, within GFF2042 at 83.401 kb on + strand, within GFF2042 at 83.401 kb on + strand, within GFF2042 at 83.401 kb on + strand, within GFF2042 at 83.401 kb on + strand, within GFF2042 at 83.401 kb on + strand, within GFF2042 at 83.401 kb on + strand, within GFF2042 at 83.401 kb on + strand, within GFF2042 at 83.402 kb on - strand, within GFF2042 at 83.402 kb on - strand, within GFF2042 at 83.402 kb on - strand, within GFF2042 at 83.402 kb on - strand, within GFF2042 at 83.402 kb on - strand, within GFF2042 at 83.402 kb on - strand, within GFF2042 at 83.402 kb on - strand, within GFF2042 at 83.402 kb on - strand, within GFF2042 at 83.403 kb on + strand, within GFF2042 at 83.403 kb on + strand, within GFF2042 at 83.403 kb on + strand, within GFF2042 at 83.403 kb on + strand, within GFF2042 at 83.403 kb on + strand, within GFF2042 at 83.403 kb on + strand, within GFF2042 at 83.403 kb on + strand, within GFF2042 at 83.403 kb on + strand, within GFF2042 at 83.403 kb on + strand, within GFF2042 at 83.403 kb on + strand, within GFF2042 at 83.404 kb on - strand, within GFF2042 at 83.404 kb on - strand, within GFF2042 at 83.404 kb on - strand, within GFF2042 at 83.404 kb on - strand, within GFF2042 at 83.404 kb on - strand, within GFF2042 at 83.404 kb on - strand, within GFF2042 at 83.404 kb on - strand, within GFF2042 at 83.436 kb on + strand, within GFF2042 at 83.436 kb on + strand, within GFF2042 at 83.442 kb on + strand, within GFF2042 at 83.452 kb on + strand, within GFF2042 at 83.452 kb on + strand, within GFF2042 at 83.452 kb on + strand, within GFF2042 at 83.452 kb on + strand, within GFF2042 at 83.452 kb on + strand, within GFF2042 at 83.452 kb on + strand, within GFF2042 at 83.453 kb on - strand, within GFF2042 at 83.453 kb on - strand, within GFF2042 at 83.453 kb on - strand, within GFF2042 at 83.453 kb on - strand, within GFF2042 at 83.454 kb on + strand, within GFF2042 at 83.454 kb on + strand, within GFF2042 at 83.455 kb on - strand, within GFF2042 at 83.455 kb on - strand, within GFF2042 at 83.546 kb on + strand, within GFF2042 at 83.546 kb on + strand, within GFF2042 at 83.546 kb on + strand, within GFF2042 at 83.546 kb on + strand, within GFF2042 at 83.546 kb on + strand, within GFF2042 at 83.546 kb on + strand, within GFF2042 at 83.546 kb on + strand, within GFF2042 at 83.547 kb on - strand, within GFF2042 at 83.547 kb on - strand, within GFF2042 at 83.547 kb on - strand, within GFF2042 at 83.547 kb on - strand, within GFF2042 at 83.547 kb on - strand, within GFF2042 at 83.563 kb on + strand, within GFF2042 at 83.564 kb on - strand, within GFF2042 at 83.564 kb on - strand, within GFF2042 at 83.612 kb on + strand at 83.624 kb on + strand at 83.641 kb on + strand at 83.641 kb on + strand at 83.641 kb on + strand at 83.641 kb on + strand at 83.642 kb on - strand at 83.642 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction dNMS no carbon remove 81,794 - -0.7 81,862 - GFF2040 0.12 +0.6 81,893 + GFF2040 0.21 -0.0 81,893 + GFF2040 0.21 +1.3 81,893 + GFF2040 0.21 -0.3 81,893 + GFF2040 0.21 +0.5 81,893 + GFF2040 0.21 -0.3 81,894 - GFF2040 0.22 -0.3 81,894 - GFF2040 0.22 +0.1 81,894 - GFF2040 0.22 -0.8 81,894 - GFF2040 0.22 -0.3 81,912 + GFF2040 0.27 +0.1 81,913 - GFF2040 0.27 -0.5 81,928 + GFF2040 0.32 -1.5 81,929 - GFF2040 0.32 +0.6 81,929 - GFF2040 0.32 -1.3 81,951 + GFF2040 0.39 -0.2 81,971 - GFF2040 0.45 -0.2 82,020 + GFF2040 0.59 -0.4 82,024 + GFF2040 0.60 -1.4 82,024 + GFF2040 0.60 -1.0 82,024 + GFF2040 0.60 -0.6 82,024 + GFF2040 0.60 -1.4 82,025 - GFF2040 0.61 +0.4 82,046 - GFF2040 0.67 -1.1 82,046 - GFF2040 0.67 +0.6 82,073 - GFF2040 0.75 -0.2 82,073 - GFF2040 0.75 -0.4 82,090 + GFF2040 0.80 -1.1 82,090 + GFF2040 0.80 -0.4 82,090 + GFF2040 0.80 -0.3 82,124 - -0.6 82,133 + -0.4 82,134 - +1.1 82,136 - +0.1 82,136 - -0.9 82,136 - -0.2 82,136 - -1.5 82,207 + -0.9 82,207 + +0.1 82,207 + -0.2 82,208 - +0.4 82,208 - -0.6 82,208 - -0.7 82,212 + -1.6 82,212 + -1.5 82,212 + +0.3 82,212 + -0.9 82,213 - -1.4 82,213 - +1.1 82,237 - GFF2041 0.11 -0.3 82,265 + GFF2041 0.17 -1.0 82,286 + GFF2041 0.22 -0.9 82,286 + GFF2041 0.22 -0.7 82,286 + GFF2041 0.22 +0.8 82,434 + GFF2041 0.54 -0.7 82,434 + GFF2041 0.54 -0.3 82,435 - GFF2041 0.54 -1.0 82,435 - GFF2041 0.54 -1.3 82,435 - GFF2041 0.54 -0.4 82,435 - GFF2041 0.54 +0.1 82,435 - GFF2041 0.54 -0.6 82,435 - GFF2041 0.54 -0.9 82,435 - GFF2041 0.54 +1.9 82,456 + GFF2041 0.59 -1.5 82,542 - GFF2041 0.78 -0.9 82,612 + -0.2 82,612 + -0.7 82,612 + -1.3 82,612 + -0.1 82,612 + +0.5 82,612 + -0.5 82,613 - -0.7 82,613 - -0.4 82,613 - -0.8 82,613 - -1.3 82,613 - -0.5 82,613 - -1.3 82,613 - -0.5 82,654 + -0.1 82,654 + -0.5 82,654 + -1.5 82,662 + +0.1 82,662 + -0.9 82,662 + -0.5 82,662 + -0.2 82,663 - -1.4 82,696 - -1.3 82,696 - +0.8 82,762 + -0.8 82,763 - -0.9 82,773 + GFF2042 0.11 +0.1 82,805 + GFF2042 0.14 -0.9 82,806 - GFF2042 0.14 -1.7 82,806 - GFF2042 0.14 -0.1 82,835 - GFF2042 0.17 -0.5 83,009 + GFF2042 0.34 -0.9 83,009 + GFF2042 0.34 -0.4 83,009 + GFF2042 0.34 +0.5 83,009 + GFF2042 0.34 -0.7 83,009 + GFF2042 0.34 -0.7 83,009 + GFF2042 0.34 -1.9 83,010 - GFF2042 0.34 -0.9 83,010 - GFF2042 0.34 -0.9 83,010 - GFF2042 0.34 -1.3 83,010 - GFF2042 0.34 -1.5 83,010 - GFF2042 0.34 -0.9 83,010 - GFF2042 0.34 -1.0 83,010 - GFF2042 0.34 -0.4 83,010 - GFF2042 0.34 -0.5 83,055 + GFF2042 0.39 -0.4 83,056 - GFF2042 0.39 +0.1 83,056 - GFF2042 0.39 -1.3 83,068 + GFF2042 0.40 -0.9 83,068 + GFF2042 0.40 +0.1 83,068 + GFF2042 0.40 +0.6 83,068 + GFF2042 0.40 -0.7 83,068 + GFF2042 0.40 -0.9 83,068 + GFF2042 0.40 -0.7 83,069 - GFF2042 0.40 -1.3 83,069 - GFF2042 0.40 -0.9 83,069 - GFF2042 0.40 +0.4 83,069 - GFF2042 0.40 -0.8 83,069 - GFF2042 0.40 -1.7 83,069 - GFF2042 0.40 -0.9 83,069 - GFF2042 0.40 +0.4 83,142 + GFF2042 0.47 -1.5 83,154 + GFF2042 0.49 +0.6 83,219 + GFF2042 0.55 -0.1 83,220 - GFF2042 0.55 -0.9 83,226 + GFF2042 0.56 -0.9 83,283 + GFF2042 0.61 -0.5 83,284 - GFF2042 0.61 +0.1 83,284 - GFF2042 0.61 -0.9 83,284 - GFF2042 0.61 -1.5 83,284 - GFF2042 0.61 +0.6 83,327 + GFF2042 0.66 -1.7 83,327 + GFF2042 0.66 -0.6 83,327 + GFF2042 0.66 -0.6 83,327 + GFF2042 0.66 -0.7 83,328 - GFF2042 0.66 -1.7 83,328 - GFF2042 0.66 -0.5 83,328 - GFF2042 0.66 -1.5 83,396 - GFF2042 0.73 +0.3 83,399 + GFF2042 0.73 +1.1 83,399 + GFF2042 0.73 -0.1 83,399 + GFF2042 0.73 -1.5 83,399 + GFF2042 0.73 +0.4 83,399 + GFF2042 0.73 -0.7 83,400 - GFF2042 0.73 -0.4 83,400 - GFF2042 0.73 -1.3 83,400 - GFF2042 0.73 -1.0 83,400 - GFF2042 0.73 -0.5 83,400 - GFF2042 0.73 -0.1 83,400 - GFF2042 0.73 -0.1 83,400 - GFF2042 0.73 -1.4 83,400 - GFF2042 0.73 +0.1 83,400 - GFF2042 0.73 +0.5 83,400 - GFF2042 0.73 -0.3 83,400 - GFF2042 0.73 -1.5 83,400 - GFF2042 0.73 +0.1 83,400 - GFF2042 0.73 -0.5 83,400 - GFF2042 0.73 -0.2 83,400 - GFF2042 0.73 -0.4 83,400 - GFF2042 0.73 -0.9 83,400 - GFF2042 0.73 -0.3 83,401 + GFF2042 0.73 -0.4 83,401 + GFF2042 0.73 -0.7 83,401 + GFF2042 0.73 +0.7 83,401 + GFF2042 0.73 -1.3 83,401 + GFF2042 0.73 -0.9 83,401 + GFF2042 0.73 -0.3 83,401 + GFF2042 0.73 -1.3 83,402 - GFF2042 0.73 -1.5 83,402 - GFF2042 0.73 -1.2 83,402 - GFF2042 0.73 -0.7 83,402 - GFF2042 0.73 -2.3 83,402 - GFF2042 0.73 +0.3 83,402 - GFF2042 0.73 -0.4 83,402 - GFF2042 0.73 -1.6 83,402 - GFF2042 0.73 +1.1 83,403 + GFF2042 0.73 -1.1 83,403 + GFF2042 0.73 +0.1 83,403 + GFF2042 0.73 -2.0 83,403 + GFF2042 0.73 -0.5 83,403 + GFF2042 0.73 -1.7 83,403 + GFF2042 0.73 -2.3 83,403 + GFF2042 0.73 -0.9 83,403 + GFF2042 0.73 +1.1 83,403 + GFF2042 0.73 -0.9 83,403 + GFF2042 0.73 -0.3 83,404 - GFF2042 0.73 +1.4 83,404 - GFF2042 0.73 -0.2 83,404 - GFF2042 0.73 -1.5 83,404 - GFF2042 0.73 +0.5 83,404 - GFF2042 0.73 -1.2 83,404 - GFF2042 0.73 +0.1 83,404 - GFF2042 0.73 -0.4 83,436 + GFF2042 0.76 +1.9 83,436 + GFF2042 0.76 -1.9 83,442 + GFF2042 0.77 -0.5 83,452 + GFF2042 0.78 -0.6 83,452 + GFF2042 0.78 +0.7 83,452 + GFF2042 0.78 -0.9 83,452 + GFF2042 0.78 +0.3 83,452 + GFF2042 0.78 -0.9 83,452 + GFF2042 0.78 -0.9 83,453 - GFF2042 0.78 -1.4 83,453 - GFF2042 0.78 -2.9 83,453 - GFF2042 0.78 -0.9 83,453 - GFF2042 0.78 +0.6 83,454 + GFF2042 0.78 -0.7 83,454 + GFF2042 0.78 -0.9 83,455 - GFF2042 0.78 -1.5 83,455 - GFF2042 0.78 -0.5 83,546 + GFF2042 0.87 +0.3 83,546 + GFF2042 0.87 +0.5 83,546 + GFF2042 0.87 +0.4 83,546 + GFF2042 0.87 -0.3 83,546 + GFF2042 0.87 -0.1 83,546 + GFF2042 0.87 +0.1 83,546 + GFF2042 0.87 -0.3 83,547 - GFF2042 0.87 -1.7 83,547 - GFF2042 0.87 -0.6 83,547 - GFF2042 0.87 -1.3 83,547 - GFF2042 0.87 -0.3 83,547 - GFF2042 0.87 -1.8 83,563 + GFF2042 0.89 -1.7 83,564 - GFF2042 0.89 -0.4 83,564 - GFF2042 0.89 +0.3 83,612 + -0.8 83,624 + +1.1 83,641 + -1.3 83,641 + -0.7 83,641 + -0.9 83,641 + -0.3 83,642 - -1.3 83,642 - -1.5
Or see this region's nucleotide sequence