Strain Fitness in Methylophilus sp. DMC18 around GFF1054

Experiment: dNMS no carbon

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1052 and GFF1053 are separated by 21 nucleotidesGFF1053 and GFF1054 are separated by 183 nucleotidesGFF1054 and GFF1055 are separated by 89 nucleotidesGFF1055 and GFF1056 are separated by 5 nucleotides GFF1052 - S-methyl-5'-thioinosine phosphorylase, at 290,979 to 291,734 GFF1052 GFF1053 - Peptide deformylase, at 291,756 to 292,289 GFF1053 GFF1054 - hypothetical protein, at 292,473 to 292,748 GFF1054 GFF1055 - hypothetical protein, at 292,838 to 293,125 GFF1055 GFF1056 - Bifunctional uridylyltransferase/uridylyl-removing enzyme, at 293,131 to 295,707 GFF1056 Position (kb) 292 293Strain fitness (log2 ratio) -3 -2 -1 0 1at 291.487 kb on + strand, within GFF1052at 291.487 kb on + strand, within GFF1052at 291.487 kb on + strand, within GFF1052at 291.488 kb on - strand, within GFF1052at 291.573 kb on + strand, within GFF1052at 291.574 kb on - strand, within GFF1052at 291.620 kb on + strand, within GFF1052at 291.623 kb on + strand, within GFF1052at 291.624 kb on - strand, within GFF1052at 291.632 kb on + strand, within GFF1052at 291.678 kb on - strandat 291.702 kb on + strandat 291.703 kb on - strandat 291.714 kb on - strandat 291.733 kb on - strandat 291.791 kb on + strandat 291.791 kb on + strandat 291.792 kb on - strandat 291.793 kb on + strandat 291.793 kb on + strandat 291.860 kb on + strand, within GFF1053at 291.861 kb on - strand, within GFF1053at 291.990 kb on - strand, within GFF1053at 292.130 kb on + strand, within GFF1053at 292.195 kb on + strand, within GFF1053at 292.195 kb on + strand, within GFF1053at 292.195 kb on + strand, within GFF1053at 292.196 kb on - strand, within GFF1053at 292.247 kb on + strandat 292.247 kb on + strandat 292.248 kb on - strandat 292.256 kb on - strandat 292.256 kb on - strandat 292.271 kb on - strandat 292.436 kb on + strandat 292.436 kb on + strandat 292.456 kb on + strandat 292.456 kb on + strandat 292.456 kb on + strandat 292.456 kb on + strandat 292.456 kb on + strandat 292.456 kb on + strandat 292.456 kb on + strandat 292.456 kb on + strandat 292.457 kb on - strandat 292.457 kb on - strandat 292.457 kb on - strandat 292.602 kb on + strand, within GFF1054at 292.602 kb on + strand, within GFF1054at 292.602 kb on + strand, within GFF1054at 292.652 kb on + strand, within GFF1054at 292.671 kb on + strand, within GFF1054at 292.671 kb on + strand, within GFF1054at 292.671 kb on + strand, within GFF1054at 292.671 kb on + strand, within GFF1054at 292.671 kb on + strand, within GFF1054at 292.671 kb on + strand, within GFF1054at 292.671 kb on + strand, within GFF1054at 292.675 kb on + strand, within GFF1054at 292.675 kb on + strand, within GFF1054at 292.675 kb on + strand, within GFF1054at 292.675 kb on + strand, within GFF1054at 292.675 kb on + strand, within GFF1054at 292.675 kb on + strand, within GFF1054at 292.734 kb on + strandat 292.746 kb on + strandat 292.761 kb on + strandat 292.761 kb on + strandat 292.761 kb on + strandat 292.761 kb on + strandat 292.761 kb on + strandat 292.761 kb on + strandat 292.761 kb on + strandat 292.762 kb on - strandat 292.818 kb on + strandat 292.833 kb on + strandat 292.834 kb on - strandat 292.908 kb on + strand, within GFF1055at 292.942 kb on + strand, within GFF1055at 292.942 kb on + strand, within GFF1055at 292.942 kb on + strand, within GFF1055at 292.943 kb on - strand, within GFF1055at 292.943 kb on - strand, within GFF1055at 292.958 kb on + strand, within GFF1055at 292.958 kb on + strand, within GFF1055at 292.960 kb on + strand, within GFF1055at 292.960 kb on + strand, within GFF1055at 292.960 kb on + strand, within GFF1055at 292.960 kb on + strand, within GFF1055at 292.960 kb on + strand, within GFF1055at 292.960 kb on + strand, within GFF1055at 292.960 kb on + strand, within GFF1055at 292.961 kb on - strand, within GFF1055at 292.961 kb on - strand, within GFF1055at 292.961 kb on - strand, within GFF1055at 292.961 kb on - strand, within GFF1055at 292.979 kb on + strand, within GFF1055at 292.979 kb on + strand, within GFF1055at 292.979 kb on + strand, within GFF1055at 292.979 kb on + strand, within GFF1055at 292.979 kb on + strand, within GFF1055at 292.979 kb on + strand, within GFF1055at 292.979 kb on + strand, within GFF1055at 292.980 kb on - strand, within GFF1055at 292.980 kb on - strand, within GFF1055at 292.980 kb on - strand, within GFF1055at 292.980 kb on - strand, within GFF1055at 292.980 kb on - strand, within GFF1055at 292.980 kb on - strand, within GFF1055at 292.980 kb on - strand, within GFF1055at 292.981 kb on + strand, within GFF1055at 292.981 kb on + strand, within GFF1055at 292.981 kb on + strand, within GFF1055at 292.981 kb on + strand, within GFF1055at 292.981 kb on + strand, within GFF1055at 292.981 kb on + strand, within GFF1055at 292.982 kb on - strand, within GFF1055at 292.982 kb on - strand, within GFF1055at 292.982 kb on - strand, within GFF1055at 293.011 kb on + strand, within GFF1055at 293.011 kb on + strand, within GFF1055at 293.011 kb on + strand, within GFF1055at 293.012 kb on - strand, within GFF1055at 293.012 kb on - strand, within GFF1055at 293.049 kb on + strand, within GFF1055at 293.049 kb on + strand, within GFF1055at 293.050 kb on - strand, within GFF1055at 293.050 kb on - strand, within GFF1055at 293.050 kb on - strand, within GFF1055at 293.050 kb on - strand, within GFF1055at 293.111 kb on + strandat 293.134 kb on + strandat 293.134 kb on + strandat 293.135 kb on - strandat 293.135 kb on - strandat 293.135 kb on - strandat 293.190 kb on + strandat 293.193 kb on + strandat 293.214 kb on + strandat 293.238 kb on + strandat 293.239 kb on - strandat 293.239 kb on - strandat 293.253 kb on + strandat 293.253 kb on + strandat 293.253 kb on + strandat 293.253 kb on + strandat 293.254 kb on - strandat 293.254 kb on - strandat 293.257 kb on + strandat 293.257 kb on + strandat 293.257 kb on + strandat 293.257 kb on + strandat 293.258 kb on - strandat 293.258 kb on - strandat 293.258 kb on - strandat 293.302 kb on + strandat 293.329 kb on - strandat 293.379 kb on + strandat 293.398 kb on - strand, within GFF1056at 293.406 kb on + strand, within GFF1056at 293.407 kb on - strand, within GFF1056at 293.475 kb on + strand, within GFF1056at 293.493 kb on + strand, within GFF1056at 293.503 kb on + strand, within GFF1056at 293.512 kb on - strand, within GFF1056at 293.513 kb on + strand, within GFF1056at 293.513 kb on + strand, within GFF1056at 293.547 kb on + strand, within GFF1056at 293.548 kb on - strand, within GFF1056at 293.548 kb on - strand, within GFF1056at 293.565 kb on - strand, within GFF1056at 293.565 kb on - strand, within GFF1056at 293.583 kb on - strand, within GFF1056at 293.606 kb on + strand, within GFF1056at 293.606 kb on + strand, within GFF1056at 293.606 kb on + strand, within GFF1056at 293.606 kb on + strand, within GFF1056at 293.607 kb on - strand, within GFF1056at 293.607 kb on - strand, within GFF1056at 293.634 kb on + strand, within GFF1056at 293.666 kb on + strand, within GFF1056at 293.667 kb on - strand, within GFF1056

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Per-strain Table

Position Strand Gene LocusTag Fraction dNMS no carbon
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291,487 + GFF1052 0.67 -1.0
291,487 + GFF1052 0.67 -0.6
291,487 + GFF1052 0.67 +1.0
291,488 - GFF1052 0.67 -1.4
291,573 + GFF1052 0.79 -1.2
291,574 - GFF1052 0.79 -0.6
291,620 + GFF1052 0.85 -2.9
291,623 + GFF1052 0.85 -0.8
291,624 - GFF1052 0.85 -1.8
291,632 + GFF1052 0.86 -0.8
291,678 - +1.0
291,702 + -1.0
291,703 - -2.0
291,714 - -1.0
291,733 - +0.1
291,791 + -0.9
291,791 + +0.5
291,792 - -0.0
291,793 + -1.8
291,793 + -0.1
291,860 + GFF1053 0.19 -1.4
291,861 - GFF1053 0.20 -1.0
291,990 - GFF1053 0.44 +0.2
292,130 + GFF1053 0.70 +0.6
292,195 + GFF1053 0.82 -0.1
292,195 + GFF1053 0.82 -0.4
292,195 + GFF1053 0.82 -0.5
292,196 - GFF1053 0.82 +0.5
292,247 + -0.8
292,247 + -1.0
292,248 - -0.3
292,256 - +0.1
292,256 - -0.0
292,271 - -1.1
292,436 + -0.6
292,436 + -1.5
292,456 + -1.0
292,456 + -0.4
292,456 + +1.5
292,456 + -0.0
292,456 + -0.6
292,456 + +0.1
292,456 + -2.6
292,456 + +0.2
292,457 - +0.1
292,457 - -0.0
292,457 - +0.6
292,602 + GFF1054 0.47 -2.4
292,602 + GFF1054 0.47 -0.3
292,602 + GFF1054 0.47 -1.0
292,652 + GFF1054 0.65 -0.7
292,671 + GFF1054 0.72 -0.6
292,671 + GFF1054 0.72 +0.4
292,671 + GFF1054 0.72 -1.3
292,671 + GFF1054 0.72 -0.3
292,671 + GFF1054 0.72 -1.6
292,671 + GFF1054 0.72 -0.5
292,671 + GFF1054 0.72 -1.4
292,675 + GFF1054 0.73 +0.4
292,675 + GFF1054 0.73 -0.7
292,675 + GFF1054 0.73 +0.5
292,675 + GFF1054 0.73 -1.2
292,675 + GFF1054 0.73 -0.0
292,675 + GFF1054 0.73 -0.5
292,734 + -1.4
292,746 + -0.3
292,761 + -0.4
292,761 + +0.2
292,761 + -0.2
292,761 + -1.4
292,761 + +0.5
292,761 + +1.2
292,761 + +0.2
292,762 - -1.4
292,818 + -1.3
292,833 + -1.0
292,834 - -0.4
292,908 + GFF1055 0.24 +0.2
292,942 + GFF1055 0.36 -1.0
292,942 + GFF1055 0.36 -0.0
292,942 + GFF1055 0.36 -3.1
292,943 - GFF1055 0.36 +0.3
292,943 - GFF1055 0.36 -0.0
292,958 + GFF1055 0.42 -0.6
292,958 + GFF1055 0.42 -2.5
292,960 + GFF1055 0.42 +0.4
292,960 + GFF1055 0.42 -0.0
292,960 + GFF1055 0.42 -0.0
292,960 + GFF1055 0.42 -0.8
292,960 + GFF1055 0.42 -0.2
292,960 + GFF1055 0.42 -1.4
292,960 + GFF1055 0.42 +0.2
292,961 - GFF1055 0.43 -0.9
292,961 - GFF1055 0.43 -0.3
292,961 - GFF1055 0.43 +0.5
292,961 - GFF1055 0.43 +1.2
292,979 + GFF1055 0.49 -1.6
292,979 + GFF1055 0.49 -1.5
292,979 + GFF1055 0.49 -0.6
292,979 + GFF1055 0.49 -1.4
292,979 + GFF1055 0.49 -0.9
292,979 + GFF1055 0.49 -0.6
292,979 + GFF1055 0.49 -0.8
292,980 - GFF1055 0.49 +0.1
292,980 - GFF1055 0.49 +0.2
292,980 - GFF1055 0.49 -0.3
292,980 - GFF1055 0.49 +0.5
292,980 - GFF1055 0.49 -2.2
292,980 - GFF1055 0.49 -0.6
292,980 - GFF1055 0.49 -1.2
292,981 + GFF1055 0.50 -0.0
292,981 + GFF1055 0.50 -0.2
292,981 + GFF1055 0.50 -1.0
292,981 + GFF1055 0.50 -1.0
292,981 + GFF1055 0.50 -1.0
292,981 + GFF1055 0.50 -0.5
292,982 - GFF1055 0.50 -1.9
292,982 - GFF1055 0.50 +0.0
292,982 - GFF1055 0.50 -0.0
293,011 + GFF1055 0.60 -0.8
293,011 + GFF1055 0.60 -1.2
293,011 + GFF1055 0.60 +0.1
293,012 - GFF1055 0.60 +1.0
293,012 - GFF1055 0.60 -0.0
293,049 + GFF1055 0.73 -0.3
293,049 + GFF1055 0.73 -0.7
293,050 - GFF1055 0.74 -1.4
293,050 - GFF1055 0.74 -0.9
293,050 - GFF1055 0.74 -0.4
293,050 - GFF1055 0.74 -0.7
293,111 + -0.7
293,134 + -1.0
293,134 + -0.3
293,135 - -1.0
293,135 - +0.5
293,135 - -1.9
293,190 + -1.6
293,193 + -1.6
293,214 + +0.1
293,238 + +0.1
293,239 - -0.3
293,239 - -1.0
293,253 + -0.0
293,253 + -1.6
293,253 + -0.9
293,253 + +0.6
293,254 - -1.0
293,254 - -1.9
293,257 + -0.4
293,257 + -1.4
293,257 + -0.4
293,257 + -1.0
293,258 - +0.2
293,258 - -0.0
293,258 - -0.9
293,302 + -1.0
293,329 - -0.9
293,379 + -0.3
293,398 - GFF1056 0.10 -1.0
293,406 + GFF1056 0.11 -1.6
293,407 - GFF1056 0.11 +0.6
293,475 + GFF1056 0.13 -0.0
293,493 + GFF1056 0.14 -0.0
293,503 + GFF1056 0.14 -1.0
293,512 - GFF1056 0.15 -1.4
293,513 + GFF1056 0.15 -0.6
293,513 + GFF1056 0.15 -1.0
293,547 + GFF1056 0.16 +0.4
293,548 - GFF1056 0.16 -0.0
293,548 - GFF1056 0.16 -1.4
293,565 - GFF1056 0.17 -0.6
293,565 - GFF1056 0.17 +0.1
293,583 - GFF1056 0.18 -1.4
293,606 + GFF1056 0.18 -0.0
293,606 + GFF1056 0.18 +0.6
293,606 + GFF1056 0.18 -1.4
293,606 + GFF1056 0.18 -1.0
293,607 - GFF1056 0.18 -1.9
293,607 - GFF1056 0.18 -0.8
293,634 + GFF1056 0.20 +0.1
293,666 + GFF1056 0.21 -0.6
293,667 - GFF1056 0.21 -1.0

Or see this region's nucleotide sequence