Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06982 and MPMX19_06983 are separated by 29 nucleotides MPMX19_06983 and MPMX19_06984 overlap by 4 nucleotides MPMX19_06984 and MPMX19_06985 overlap by 4 nucleotides
MPMX19_06982: MPMX19_06982 - Aldehyde dehydrogenase, thermostable, at 263,424 to 264,878
_06982
MPMX19_06983: MPMX19_06983 - putative FAD-linked oxidoreductase, at 264,908 to 266,422
_06983
MPMX19_06984: MPMX19_06984 - Mesaconyl-C(4)-CoA hydratase, at 266,419 to 267,294
_06984
MPMX19_06985: MPMX19_06985 - L-malyl-CoA/beta-methylmalyl-CoA lyase, at 267,291 to 268,199
_06985
Position (kb)
264
265
266
267 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 264.261 kb on + strand, within MPMX19_06982 at 264.261 kb on + strand, within MPMX19_06982 at 264.261 kb on + strand, within MPMX19_06982 at 264.261 kb on + strand, within MPMX19_06982 at 264.262 kb on - strand, within MPMX19_06982 at 264.444 kb on + strand, within MPMX19_06982 at 264.444 kb on + strand, within MPMX19_06982 at 264.444 kb on + strand, within MPMX19_06982 at 264.444 kb on + strand, within MPMX19_06982 at 264.444 kb on + strand, within MPMX19_06982 at 264.444 kb on + strand, within MPMX19_06982 at 264.444 kb on + strand, within MPMX19_06982 at 264.444 kb on + strand, within MPMX19_06982 at 264.444 kb on + strand, within MPMX19_06982 at 264.445 kb on - strand, within MPMX19_06982 at 264.445 kb on - strand, within MPMX19_06982 at 264.445 kb on - strand, within MPMX19_06982 at 264.445 kb on - strand, within MPMX19_06982 at 264.445 kb on - strand, within MPMX19_06982 at 264.445 kb on - strand, within MPMX19_06982 at 264.445 kb on - strand, within MPMX19_06982 at 264.621 kb on + strand, within MPMX19_06982 at 264.621 kb on + strand, within MPMX19_06982 at 264.621 kb on + strand, within MPMX19_06982 at 264.621 kb on + strand, within MPMX19_06982 at 264.622 kb on - strand, within MPMX19_06982 at 264.677 kb on + strand, within MPMX19_06982 at 264.677 kb on + strand, within MPMX19_06982 at 264.678 kb on - strand, within MPMX19_06982 at 264.678 kb on - strand, within MPMX19_06982 at 264.678 kb on - strand, within MPMX19_06982 at 264.678 kb on - strand, within MPMX19_06982 at 264.768 kb on + strand at 264.769 kb on - strand at 264.769 kb on - strand at 264.769 kb on - strand at 264.805 kb on - strand at 264.805 kb on - strand at 264.843 kb on + strand at 264.843 kb on + strand at 264.843 kb on + strand at 264.843 kb on + strand at 264.844 kb on - strand at 264.864 kb on + strand at 264.864 kb on + strand at 264.992 kb on - strand at 265.439 kb on + strand, within MPMX19_06983 at 265.539 kb on - strand, within MPMX19_06983 at 265.808 kb on + strand, within MPMX19_06983 at 265.808 kb on + strand, within MPMX19_06983 at 265.808 kb on + strand, within MPMX19_06983 at 265.809 kb on - strand, within MPMX19_06983 at 265.809 kb on - strand, within MPMX19_06983 at 265.809 kb on - strand, within MPMX19_06983 at 266.132 kb on + strand, within MPMX19_06983 at 266.132 kb on + strand, within MPMX19_06983 at 266.132 kb on + strand, within MPMX19_06983 at 266.132 kb on + strand, within MPMX19_06983 at 266.132 kb on + strand, within MPMX19_06983 at 266.133 kb on - strand, within MPMX19_06983 at 266.133 kb on - strand, within MPMX19_06983 at 266.133 kb on - strand, within MPMX19_06983 at 266.133 kb on - strand, within MPMX19_06983 at 266.289 kb on - strand at 266.425 kb on + strand at 266.822 kb on + strand, within MPMX19_06984 at 266.822 kb on + strand, within MPMX19_06984 at 266.822 kb on + strand, within MPMX19_06984 at 266.823 kb on - strand, within MPMX19_06984 at 266.823 kb on - strand, within MPMX19_06984 at 266.998 kb on + strand, within MPMX19_06984 at 266.999 kb on - strand, within MPMX19_06984 at 266.999 kb on - strand, within MPMX19_06984 at 267.031 kb on + strand, within MPMX19_06984
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 264,261 + MPMX19_06982 0.58 +1.3 264,261 + MPMX19_06982 0.58 -1.9 264,261 + MPMX19_06982 0.58 +0.4 264,261 + MPMX19_06982 0.58 +0.4 264,262 - MPMX19_06982 0.58 +0.6 264,444 + MPMX19_06982 0.70 +0.5 264,444 + MPMX19_06982 0.70 +0.7 264,444 + MPMX19_06982 0.70 -0.9 264,444 + MPMX19_06982 0.70 -0.2 264,444 + MPMX19_06982 0.70 -0.3 264,444 + MPMX19_06982 0.70 -0.6 264,444 + MPMX19_06982 0.70 +0.4 264,444 + MPMX19_06982 0.70 -0.2 264,444 + MPMX19_06982 0.70 -1.0 264,445 - MPMX19_06982 0.70 -1.3 264,445 - MPMX19_06982 0.70 -1.6 264,445 - MPMX19_06982 0.70 -1.5 264,445 - MPMX19_06982 0.70 +0.8 264,445 - MPMX19_06982 0.70 -0.0 264,445 - MPMX19_06982 0.70 +0.6 264,445 - MPMX19_06982 0.70 -1.2 264,621 + MPMX19_06982 0.82 -0.9 264,621 + MPMX19_06982 0.82 +0.3 264,621 + MPMX19_06982 0.82 -0.7 264,621 + MPMX19_06982 0.82 -0.0 264,622 - MPMX19_06982 0.82 +0.8 264,677 + MPMX19_06982 0.86 -1.2 264,677 + MPMX19_06982 0.86 +0.4 264,678 - MPMX19_06982 0.86 +0.3 264,678 - MPMX19_06982 0.86 -1.2 264,678 - MPMX19_06982 0.86 -0.7 264,678 - MPMX19_06982 0.86 -1.7 264,768 + +0.4 264,769 - -0.4 264,769 - -0.4 264,769 - -0.6 264,805 - -0.5 264,805 - +2.3 264,843 + -0.6 264,843 + +0.2 264,843 + -0.4 264,843 + -0.2 264,844 - -0.6 264,864 + -2.2 264,864 + +0.1 264,992 - +0.4 265,439 + MPMX19_06983 0.35 -2.0 265,539 - MPMX19_06983 0.42 -0.0 265,808 + MPMX19_06983 0.59 +0.1 265,808 + MPMX19_06983 0.59 +0.3 265,808 + MPMX19_06983 0.59 -0.9 265,809 - MPMX19_06983 0.59 +0.3 265,809 - MPMX19_06983 0.59 -1.3 265,809 - MPMX19_06983 0.59 -0.9 266,132 + MPMX19_06983 0.81 -1.0 266,132 + MPMX19_06983 0.81 -1.2 266,132 + MPMX19_06983 0.81 -1.2 266,132 + MPMX19_06983 0.81 -0.8 266,132 + MPMX19_06983 0.81 -1.6 266,133 - MPMX19_06983 0.81 -1.2 266,133 - MPMX19_06983 0.81 -1.0 266,133 - MPMX19_06983 0.81 +0.1 266,133 - MPMX19_06983 0.81 +0.5 266,289 - -1.3 266,425 + -0.3 266,822 + MPMX19_06984 0.46 -0.6 266,822 + MPMX19_06984 0.46 -2.0 266,822 + MPMX19_06984 0.46 +0.4 266,823 - MPMX19_06984 0.46 -0.3 266,823 - MPMX19_06984 0.46 -1.9 266,998 + MPMX19_06984 0.66 -0.7 266,999 - MPMX19_06984 0.66 +0.3 266,999 - MPMX19_06984 0.66 +0.0 267,031 + MPMX19_06984 0.70 -0.7
Or see this region's nucleotide sequence