Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06414 and MPMX19_06415 are separated by 10 nucleotides
MPMX19_06414: MPMX19_06414 - hypothetical protein, at 183,890 to 184,456
_06414
MPMX19_06415: MPMX19_06415 - Copper resistance protein A, at 184,467 to 186,341
_06415
Position (kb) 183
184
185 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 182.959 kb on - strand at 183.084 kb on + strand at 183.084 kb on + strand at 183.085 kb on - strand at 183.085 kb on - strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.133 kb on - strand at 183.133 kb on - strand at 183.133 kb on - strand at 183.133 kb on - strand at 183.133 kb on - strand at 183.133 kb on - strand at 183.133 kb on - strand at 183.133 kb on - strand at 183.133 kb on - strand at 183.133 kb on - strand at 183.133 kb on - strand at 183.160 kb on + strand at 183.160 kb on + strand at 183.206 kb on + strand at 183.206 kb on + strand at 183.207 kb on - strand at 183.207 kb on - strand at 183.207 kb on - strand at 183.300 kb on + strand at 183.301 kb on - strand at 183.301 kb on - strand at 183.457 kb on - strand at 183.458 kb on + strand at 183.458 kb on + strand at 183.458 kb on + strand at 183.458 kb on + strand at 183.458 kb on + strand at 183.458 kb on + strand at 183.458 kb on + strand at 183.459 kb on - strand at 183.459 kb on - strand at 183.459 kb on - strand at 183.459 kb on - strand at 183.459 kb on - strand at 183.459 kb on - strand at 183.459 kb on - strand at 183.459 kb on - strand at 183.548 kb on + strand at 183.548 kb on + strand at 183.548 kb on + strand at 183.548 kb on + strand at 183.548 kb on + strand at 183.548 kb on + strand at 183.548 kb on + strand at 183.548 kb on + strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.560 kb on + strand at 183.561 kb on - strand at 183.699 kb on + strand at 183.700 kb on - strand at 183.700 kb on - strand at 183.700 kb on - strand at 183.877 kb on + strand at 183.877 kb on + strand at 183.877 kb on + strand at 183.878 kb on - strand at 183.878 kb on - strand at 183.886 kb on + strand at 183.886 kb on + strand at 183.886 kb on + strand at 183.886 kb on + strand at 183.887 kb on - strand at 183.887 kb on - strand at 183.887 kb on - strand at 183.887 kb on - strand at 183.887 kb on - strand at 183.887 kb on - strand at 183.887 kb on - strand at 183.887 kb on - strand at 183.888 kb on + strand at 183.888 kb on + strand at 183.888 kb on + strand at 183.889 kb on - strand at 183.889 kb on - strand at 183.889 kb on - strand at 183.889 kb on - strand at 183.889 kb on - strand at 183.908 kb on - strand at 184.051 kb on + strand, within MPMX19_06414 at 184.051 kb on + strand, within MPMX19_06414 at 184.052 kb on - strand, within MPMX19_06414 at 184.079 kb on + strand, within MPMX19_06414 at 184.079 kb on + strand, within MPMX19_06414 at 184.079 kb on + strand, within MPMX19_06414 at 184.079 kb on + strand, within MPMX19_06414 at 184.080 kb on - strand, within MPMX19_06414 at 184.080 kb on - strand, within MPMX19_06414 at 184.082 kb on + strand, within MPMX19_06414 at 184.082 kb on + strand, within MPMX19_06414 at 184.082 kb on + strand, within MPMX19_06414 at 184.083 kb on - strand, within MPMX19_06414 at 184.083 kb on - strand, within MPMX19_06414 at 184.083 kb on - strand, within MPMX19_06414 at 184.415 kb on + strand at 184.415 kb on + strand at 184.415 kb on + strand at 184.415 kb on + strand at 184.416 kb on - strand at 184.416 kb on - strand at 184.416 kb on - strand at 184.416 kb on - strand at 184.416 kb on - strand at 184.416 kb on - strand at 184.551 kb on + strand at 184.551 kb on + strand at 184.652 kb on + strand at 184.833 kb on + strand, within MPMX19_06415 at 184.833 kb on + strand, within MPMX19_06415 at 184.833 kb on + strand, within MPMX19_06415 at 184.833 kb on + strand, within MPMX19_06415 at 184.833 kb on + strand, within MPMX19_06415 at 184.833 kb on + strand, within MPMX19_06415 at 184.833 kb on + strand, within MPMX19_06415 at 184.833 kb on + strand, within MPMX19_06415 at 184.834 kb on - strand, within MPMX19_06415 at 184.834 kb on - strand, within MPMX19_06415 at 184.834 kb on - strand, within MPMX19_06415 at 184.834 kb on - strand, within MPMX19_06415 at 184.834 kb on - strand, within MPMX19_06415 at 184.834 kb on - strand, within MPMX19_06415 at 184.834 kb on - strand, within MPMX19_06415 at 184.834 kb on - strand, within MPMX19_06415 at 184.839 kb on + strand, within MPMX19_06415 at 184.839 kb on + strand, within MPMX19_06415 at 184.839 kb on + strand, within MPMX19_06415 at 184.839 kb on + strand, within MPMX19_06415 at 184.839 kb on + strand, within MPMX19_06415 at 184.839 kb on + strand, within MPMX19_06415 at 184.839 kb on + strand, within MPMX19_06415 at 184.840 kb on - strand, within MPMX19_06415 at 184.840 kb on - strand, within MPMX19_06415 at 184.840 kb on - strand, within MPMX19_06415 at 184.840 kb on - strand, within MPMX19_06415 at 184.840 kb on - strand, within MPMX19_06415 at 184.840 kb on - strand, within MPMX19_06415 at 184.840 kb on - strand, within MPMX19_06415 at 184.840 kb on - strand, within MPMX19_06415 at 184.840 kb on - strand, within MPMX19_06415 at 184.869 kb on + strand, within MPMX19_06415 at 184.869 kb on + strand, within MPMX19_06415 at 184.869 kb on + strand, within MPMX19_06415 at 184.869 kb on + strand, within MPMX19_06415 at 184.875 kb on + strand, within MPMX19_06415 at 184.875 kb on + strand, within MPMX19_06415 at 184.875 kb on + strand, within MPMX19_06415 at 184.876 kb on - strand, within MPMX19_06415 at 184.914 kb on + strand, within MPMX19_06415 at 184.914 kb on + strand, within MPMX19_06415 at 184.914 kb on + strand, within MPMX19_06415 at 184.914 kb on + strand, within MPMX19_06415 at 184.914 kb on + strand, within MPMX19_06415 at 184.915 kb on - strand, within MPMX19_06415 at 184.915 kb on - strand, within MPMX19_06415 at 184.915 kb on - strand, within MPMX19_06415 at 184.915 kb on - strand, within MPMX19_06415 at 184.915 kb on - strand, within MPMX19_06415 at 184.971 kb on + strand, within MPMX19_06415 at 184.971 kb on + strand, within MPMX19_06415 at 184.971 kb on + strand, within MPMX19_06415 at 184.972 kb on - strand, within MPMX19_06415 at 184.972 kb on - strand, within MPMX19_06415 at 184.972 kb on - strand, within MPMX19_06415 at 184.972 kb on - strand, within MPMX19_06415 at 185.046 kb on + strand, within MPMX19_06415 at 185.047 kb on - strand, within MPMX19_06415 at 185.047 kb on - strand, within MPMX19_06415 at 185.049 kb on + strand, within MPMX19_06415 at 185.049 kb on + strand, within MPMX19_06415 at 185.050 kb on - strand, within MPMX19_06415 at 185.050 kb on - strand, within MPMX19_06415 at 185.050 kb on - strand, within MPMX19_06415 at 185.050 kb on - strand, within MPMX19_06415 at 185.050 kb on - strand, within MPMX19_06415 at 185.050 kb on - strand, within MPMX19_06415 at 185.050 kb on - strand, within MPMX19_06415 at 185.057 kb on + strand, within MPMX19_06415 at 185.058 kb on - strand, within MPMX19_06415 at 185.235 kb on + strand, within MPMX19_06415 at 185.236 kb on - strand, within MPMX19_06415 at 185.236 kb on - strand, within MPMX19_06415 at 185.236 kb on - strand, within MPMX19_06415 at 185.236 kb on - strand, within MPMX19_06415 at 185.236 kb on - strand, within MPMX19_06415 at 185.236 kb on - strand, within MPMX19_06415 at 185.318 kb on + strand, within MPMX19_06415 at 185.318 kb on + strand, within MPMX19_06415 at 185.318 kb on + strand, within MPMX19_06415 at 185.318 kb on + strand, within MPMX19_06415 at 185.319 kb on - strand, within MPMX19_06415 at 185.319 kb on - strand, within MPMX19_06415 at 185.319 kb on - strand, within MPMX19_06415 at 185.319 kb on - strand, within MPMX19_06415 at 185.319 kb on - strand, within MPMX19_06415 at 185.319 kb on - strand, within MPMX19_06415 at 185.397 kb on + strand, within MPMX19_06415 at 185.397 kb on + strand, within MPMX19_06415 at 185.397 kb on + strand, within MPMX19_06415 at 185.397 kb on + strand, within MPMX19_06415 at 185.398 kb on - strand, within MPMX19_06415 at 185.398 kb on - strand, within MPMX19_06415 at 185.398 kb on - strand, within MPMX19_06415 at 185.398 kb on - strand, within MPMX19_06415 at 185.398 kb on - strand, within MPMX19_06415
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 182,959 - -1.4 183,084 + -0.6 183,084 + +0.9 183,085 - -1.9 183,085 - -1.9 183,132 + -2.2 183,132 + -1.3 183,132 + -0.1 183,132 + +0.6 183,132 + -1.5 183,132 + +0.3 183,132 + +0.6 183,132 + +0.2 183,132 + -0.9 183,132 + -0.1 183,132 + -0.1 183,132 + -1.0 183,132 + +0.9 183,133 - -1.0 183,133 - +0.6 183,133 - -0.9 183,133 - +0.6 183,133 - -0.3 183,133 - -0.9 183,133 - -0.8 183,133 - +1.9 183,133 - -1.5 183,133 - +1.5 183,133 - -2.7 183,160 + -1.1 183,160 + -1.2 183,206 + +1.2 183,206 + -1.8 183,207 - +1.9 183,207 - +1.3 183,207 - -0.8 183,300 + -0.4 183,301 - +1.1 183,301 - -1.4 183,457 - +1.2 183,458 + -1.9 183,458 + +0.3 183,458 + -0.1 183,458 + +0.6 183,458 + -1.5 183,458 + +0.7 183,458 + -0.7 183,459 - +1.1 183,459 - -0.7 183,459 - +0.1 183,459 - -1.5 183,459 - +0.3 183,459 - -0.6 183,459 - +0.3 183,459 - +0.3 183,548 + -0.7 183,548 + +0.3 183,548 + -1.4 183,548 + +0.1 183,548 + -0.4 183,548 + -1.8 183,548 + -1.2 183,548 + -2.3 183,549 - -0.3 183,549 - -1.1 183,549 - +0.0 183,549 - +0.3 183,549 - -0.9 183,549 - -0.3 183,549 - -1.5 183,549 - +0.1 183,549 - -1.0 183,549 - +0.1 183,549 - -0.7 183,549 - +0.2 183,549 - +1.5 183,560 + -0.4 183,561 - -0.9 183,699 + -1.5 183,700 - -1.4 183,700 - -0.6 183,700 - -0.2 183,877 + -1.2 183,877 + -0.9 183,877 + +0.6 183,878 - +0.5 183,878 - -0.8 183,886 + +0.3 183,886 + +0.6 183,886 + -0.3 183,886 + -1.5 183,887 - +0.6 183,887 - +0.4 183,887 - -0.5 183,887 - -0.7 183,887 - -0.7 183,887 - -0.7 183,887 - -0.1 183,887 - +0.2 183,888 + -0.7 183,888 + -1.0 183,888 + -2.2 183,889 - +0.3 183,889 - -0.0 183,889 - -0.4 183,889 - -2.0 183,889 - -0.5 183,908 - -0.1 184,051 + MPMX19_06414 0.28 +1.5 184,051 + MPMX19_06414 0.28 -0.8 184,052 - MPMX19_06414 0.29 -1.7 184,079 + MPMX19_06414 0.33 -1.3 184,079 + MPMX19_06414 0.33 -0.7 184,079 + MPMX19_06414 0.33 -0.1 184,079 + MPMX19_06414 0.33 -1.1 184,080 - MPMX19_06414 0.34 -1.3 184,080 - MPMX19_06414 0.34 +0.6 184,082 + MPMX19_06414 0.34 -1.1 184,082 + MPMX19_06414 0.34 -1.8 184,082 + MPMX19_06414 0.34 -1.4 184,083 - MPMX19_06414 0.34 -0.5 184,083 - MPMX19_06414 0.34 -0.5 184,083 - MPMX19_06414 0.34 -1.0 184,415 + -2.2 184,415 + -0.7 184,415 + -0.2 184,415 + -0.6 184,416 - -0.7 184,416 - -0.9 184,416 - -0.9 184,416 - -0.1 184,416 - -1.1 184,416 - -2.9 184,551 + -0.7 184,551 + -0.7 184,652 + -1.3 184,833 + MPMX19_06415 0.20 +0.9 184,833 + MPMX19_06415 0.20 +1.2 184,833 + MPMX19_06415 0.20 -2.3 184,833 + MPMX19_06415 0.20 -0.3 184,833 + MPMX19_06415 0.20 -1.4 184,833 + MPMX19_06415 0.20 +1.7 184,833 + MPMX19_06415 0.20 +0.9 184,833 + MPMX19_06415 0.20 -0.1 184,834 - MPMX19_06415 0.20 -1.5 184,834 - MPMX19_06415 0.20 +0.9 184,834 - MPMX19_06415 0.20 +0.3 184,834 - MPMX19_06415 0.20 +0.6 184,834 - MPMX19_06415 0.20 -0.8 184,834 - MPMX19_06415 0.20 -1.3 184,834 - MPMX19_06415 0.20 +0.8 184,834 - MPMX19_06415 0.20 -0.1 184,839 + MPMX19_06415 0.20 -1.6 184,839 + MPMX19_06415 0.20 -0.4 184,839 + MPMX19_06415 0.20 -1.2 184,839 + MPMX19_06415 0.20 -0.5 184,839 + MPMX19_06415 0.20 -0.5 184,839 + MPMX19_06415 0.20 +0.9 184,839 + MPMX19_06415 0.20 +0.9 184,840 - MPMX19_06415 0.20 -0.3 184,840 - MPMX19_06415 0.20 -1.2 184,840 - MPMX19_06415 0.20 +0.5 184,840 - MPMX19_06415 0.20 -0.7 184,840 - MPMX19_06415 0.20 -0.3 184,840 - MPMX19_06415 0.20 -0.1 184,840 - MPMX19_06415 0.20 -1.1 184,840 - MPMX19_06415 0.20 -1.1 184,840 - MPMX19_06415 0.20 -0.3 184,869 + MPMX19_06415 0.21 -1.5 184,869 + MPMX19_06415 0.21 +0.3 184,869 + MPMX19_06415 0.21 -1.7 184,869 + MPMX19_06415 0.21 -2.3 184,875 + MPMX19_06415 0.22 +0.8 184,875 + MPMX19_06415 0.22 -1.3 184,875 + MPMX19_06415 0.22 -0.1 184,876 - MPMX19_06415 0.22 -0.8 184,914 + MPMX19_06415 0.24 +0.6 184,914 + MPMX19_06415 0.24 +0.2 184,914 + MPMX19_06415 0.24 +0.6 184,914 + MPMX19_06415 0.24 +0.5 184,914 + MPMX19_06415 0.24 +0.5 184,915 - MPMX19_06415 0.24 -1.0 184,915 - MPMX19_06415 0.24 -1.4 184,915 - MPMX19_06415 0.24 -0.4 184,915 - MPMX19_06415 0.24 -0.1 184,915 - MPMX19_06415 0.24 -0.1 184,971 + MPMX19_06415 0.27 +0.3 184,971 + MPMX19_06415 0.27 -1.3 184,971 + MPMX19_06415 0.27 -1.4 184,972 - MPMX19_06415 0.27 +1.2 184,972 - MPMX19_06415 0.27 +1.2 184,972 - MPMX19_06415 0.27 -0.1 184,972 - MPMX19_06415 0.27 -0.4 185,046 + MPMX19_06415 0.31 +1.0 185,047 - MPMX19_06415 0.31 +0.5 185,047 - MPMX19_06415 0.31 -1.3 185,049 + MPMX19_06415 0.31 +0.6 185,049 + MPMX19_06415 0.31 -0.3 185,050 - MPMX19_06415 0.31 -1.5 185,050 - MPMX19_06415 0.31 +0.5 185,050 - MPMX19_06415 0.31 -1.8 185,050 - MPMX19_06415 0.31 -0.2 185,050 - MPMX19_06415 0.31 +0.3 185,050 - MPMX19_06415 0.31 +0.5 185,050 - MPMX19_06415 0.31 -0.7 185,057 + MPMX19_06415 0.31 +1.7 185,058 - MPMX19_06415 0.32 -1.2 185,235 + MPMX19_06415 0.41 -1.3 185,236 - MPMX19_06415 0.41 -0.3 185,236 - MPMX19_06415 0.41 -0.9 185,236 - MPMX19_06415 0.41 -1.5 185,236 - MPMX19_06415 0.41 -1.6 185,236 - MPMX19_06415 0.41 +0.3 185,236 - MPMX19_06415 0.41 -0.4 185,318 + MPMX19_06415 0.45 -1.3 185,318 + MPMX19_06415 0.45 -1.7 185,318 + MPMX19_06415 0.45 +0.6 185,318 + MPMX19_06415 0.45 +0.6 185,319 - MPMX19_06415 0.45 +0.5 185,319 - MPMX19_06415 0.45 -0.3 185,319 - MPMX19_06415 0.45 -2.1 185,319 - MPMX19_06415 0.45 +0.6 185,319 - MPMX19_06415 0.45 -1.2 185,319 - MPMX19_06415 0.45 -1.5 185,397 + MPMX19_06415 0.50 -0.4 185,397 + MPMX19_06415 0.50 -1.1 185,397 + MPMX19_06415 0.50 -0.7 185,397 + MPMX19_06415 0.50 -1.0 185,398 - MPMX19_06415 0.50 -0.8 185,398 - MPMX19_06415 0.50 -0.7 185,398 - MPMX19_06415 0.50 +0.7 185,398 - MPMX19_06415 0.50 +0.2 185,398 - MPMX19_06415 0.50 +1.9
Or see this region's nucleotide sequence