Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06393

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06390 and MPMX19_06391 are separated by 9 nucleotidesMPMX19_06391 and MPMX19_06392 are separated by 189 nucleotidesMPMX19_06392 and MPMX19_06393 are separated by 58 nucleotidesMPMX19_06393 and MPMX19_06394 are separated by 18 nucleotidesMPMX19_06394 and MPMX19_06395 are separated by 68 nucleotides MPMX19_06390: MPMX19_06390 - hypothetical protein, at 157,038 to 158,255 _06390 MPMX19_06391: MPMX19_06391 - hypothetical protein, at 158,265 to 158,534 _06391 MPMX19_06392: MPMX19_06392 - hypothetical protein, at 158,724 to 159,095 _06392 MPMX19_06393: MPMX19_06393 - hypothetical protein, at 159,154 to 159,882 _06393 MPMX19_06394: MPMX19_06394 - hypothetical protein, at 159,901 to 160,572 _06394 MPMX19_06395: MPMX19_06395 - Inner membrane protein YqaA, at 160,641 to 161,066 _06395 Position (kb) 159 160Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 158.232 kb on + strandat 158.232 kb on + strandat 158.232 kb on + strandat 158.233 kb on - strandat 158.233 kb on - strandat 158.233 kb on - strandat 158.233 kb on - strandat 158.233 kb on - strandat 158.233 kb on - strandat 158.233 kb on - strandat 158.266 kb on + strandat 158.266 kb on + strandat 158.267 kb on - strandat 158.272 kb on + strandat 158.272 kb on + strandat 158.272 kb on + strandat 158.272 kb on + strandat 158.272 kb on + strandat 158.273 kb on - strandat 158.273 kb on - strandat 158.273 kb on - strandat 158.546 kb on - strandat 158.563 kb on - strandat 158.563 kb on - strandat 158.658 kb on + strandat 158.658 kb on + strandat 158.659 kb on - strandat 158.671 kb on - strandat 158.671 kb on - strandat 158.671 kb on - strandat 159.289 kb on + strand, within MPMX19_06393at 159.289 kb on + strand, within MPMX19_06393at 159.289 kb on + strand, within MPMX19_06393at 159.289 kb on + strand, within MPMX19_06393at 159.289 kb on + strand, within MPMX19_06393at 159.289 kb on + strand, within MPMX19_06393at 159.289 kb on + strand, within MPMX19_06393at 159.290 kb on - strand, within MPMX19_06393at 159.290 kb on - strand, within MPMX19_06393at 159.290 kb on - strand, within MPMX19_06393at 159.290 kb on - strand, within MPMX19_06393at 159.290 kb on - strand, within MPMX19_06393at 159.290 kb on - strand, within MPMX19_06393at 159.290 kb on - strand, within MPMX19_06393at 159.331 kb on + strand, within MPMX19_06393at 159.331 kb on + strand, within MPMX19_06393at 159.361 kb on + strand, within MPMX19_06393at 159.361 kb on + strand, within MPMX19_06393at 159.362 kb on - strand, within MPMX19_06393at 159.362 kb on - strand, within MPMX19_06393at 159.362 kb on - strand, within MPMX19_06393at 159.362 kb on - strand, within MPMX19_06393at 159.403 kb on + strand, within MPMX19_06393at 159.403 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.427 kb on + strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.428 kb on - strand, within MPMX19_06393at 159.502 kb on + strand, within MPMX19_06393at 159.503 kb on - strand, within MPMX19_06393at 159.538 kb on + strand, within MPMX19_06393at 159.538 kb on + strand, within MPMX19_06393at 159.538 kb on + strand, within MPMX19_06393at 159.538 kb on + strand, within MPMX19_06393at 159.539 kb on - strand, within MPMX19_06393at 159.539 kb on - strand, within MPMX19_06393at 159.539 kb on - strand, within MPMX19_06393at 159.539 kb on - strand, within MPMX19_06393at 159.539 kb on - strand, within MPMX19_06393at 159.539 kb on - strand, within MPMX19_06393at 159.565 kb on + strand, within MPMX19_06393at 159.802 kb on + strand, within MPMX19_06393at 159.802 kb on + strand, within MPMX19_06393at 159.802 kb on + strand, within MPMX19_06393at 159.802 kb on + strand, within MPMX19_06393at 159.802 kb on + strand, within MPMX19_06393at 159.802 kb on + strand, within MPMX19_06393at 159.802 kb on + strand, within MPMX19_06393at 159.802 kb on + strand, within MPMX19_06393at 159.802 kb on + strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.803 kb on - strand, within MPMX19_06393at 159.851 kb on - strandat 160.187 kb on + strand, within MPMX19_06394at 160.187 kb on + strand, within MPMX19_06394at 160.187 kb on + strand, within MPMX19_06394at 160.187 kb on + strand, within MPMX19_06394at 160.187 kb on + strand, within MPMX19_06394at 160.187 kb on + strand, within MPMX19_06394at 160.187 kb on + strand, within MPMX19_06394at 160.187 kb on + strand, within MPMX19_06394at 160.188 kb on - strand, within MPMX19_06394at 160.188 kb on - strand, within MPMX19_06394at 160.188 kb on - strand, within MPMX19_06394at 160.188 kb on - strand, within MPMX19_06394at 160.188 kb on - strand, within MPMX19_06394at 160.188 kb on - strand, within MPMX19_06394at 160.336 kb on + strand, within MPMX19_06394at 160.336 kb on + strand, within MPMX19_06394at 160.336 kb on + strand, within MPMX19_06394at 160.336 kb on + strand, within MPMX19_06394at 160.336 kb on + strand, within MPMX19_06394at 160.336 kb on + strand, within MPMX19_06394at 160.336 kb on + strand, within MPMX19_06394at 160.336 kb on + strand, within MPMX19_06394at 160.336 kb on + strand, within MPMX19_06394at 160.337 kb on - strand, within MPMX19_06394at 160.337 kb on - strand, within MPMX19_06394at 160.337 kb on - strand, within MPMX19_06394at 160.337 kb on - strand, within MPMX19_06394at 160.337 kb on - strand, within MPMX19_06394at 160.337 kb on - strand, within MPMX19_06394at 160.337 kb on - strand, within MPMX19_06394at 160.337 kb on - strand, within MPMX19_06394at 160.337 kb on - strand, within MPMX19_06394at 160.337 kb on - strand, within MPMX19_06394at 160.338 kb on + strand, within MPMX19_06394at 160.338 kb on + strand, within MPMX19_06394at 160.338 kb on + strand, within MPMX19_06394at 160.338 kb on + strand, within MPMX19_06394at 160.339 kb on - strand, within MPMX19_06394at 160.339 kb on - strand, within MPMX19_06394at 160.339 kb on - strand, within MPMX19_06394at 160.417 kb on + strand, within MPMX19_06394at 160.417 kb on + strand, within MPMX19_06394at 160.417 kb on + strand, within MPMX19_06394at 160.417 kb on + strand, within MPMX19_06394at 160.418 kb on - strand, within MPMX19_06394at 160.418 kb on - strand, within MPMX19_06394at 160.418 kb on - strand, within MPMX19_06394at 160.546 kb on + strandat 160.546 kb on + strandat 160.546 kb on + strandat 160.546 kb on + strandat 160.547 kb on - strandat 160.702 kb on + strand, within MPMX19_06395at 160.703 kb on - strand, within MPMX19_06395at 160.830 kb on + strand, within MPMX19_06395at 160.830 kb on + strand, within MPMX19_06395at 160.831 kb on - strand, within MPMX19_06395at 160.831 kb on - strand, within MPMX19_06395at 160.831 kb on - strand, within MPMX19_06395at 160.847 kb on + strand, within MPMX19_06395

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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158,232 + -0.4
158,232 + +0.9
158,232 + -1.3
158,233 - -0.6
158,233 - -0.4
158,233 - -1.4
158,233 - -1.7
158,233 - -2.3
158,233 - +2.5
158,233 - -1.1
158,266 + +1.3
158,266 + -0.2
158,267 - +0.1
158,272 + -0.9
158,272 + +0.2
158,272 + -1.0
158,272 + -0.3
158,272 + -2.6
158,273 - -1.8
158,273 - +0.2
158,273 - -2.1
158,546 - -2.3
158,563 - +0.3
158,563 - -0.9
158,658 + +0.0
158,658 + -2.3
158,659 - +0.1
158,671 - +0.3
158,671 - -0.3
158,671 - -1.9
159,289 + MPMX19_06393 0.19 -1.1
159,289 + MPMX19_06393 0.19 -0.3
159,289 + MPMX19_06393 0.19 -1.5
159,289 + MPMX19_06393 0.19 -1.7
159,289 + MPMX19_06393 0.19 -0.9
159,289 + MPMX19_06393 0.19 +0.2
159,289 + MPMX19_06393 0.19 -0.4
159,290 - MPMX19_06393 0.19 +0.6
159,290 - MPMX19_06393 0.19 -0.4
159,290 - MPMX19_06393 0.19 -1.7
159,290 - MPMX19_06393 0.19 +0.6
159,290 - MPMX19_06393 0.19 -0.5
159,290 - MPMX19_06393 0.19 -1.3
159,290 - MPMX19_06393 0.19 -2.6
159,331 + MPMX19_06393 0.24 +0.7
159,331 + MPMX19_06393 0.24 +0.7
159,361 + MPMX19_06393 0.28 -0.8
159,361 + MPMX19_06393 0.28 -0.7
159,362 - MPMX19_06393 0.29 -1.3
159,362 - MPMX19_06393 0.29 -1.1
159,362 - MPMX19_06393 0.29 -0.3
159,362 - MPMX19_06393 0.29 -2.1
159,403 + MPMX19_06393 0.34 -0.3
159,403 + MPMX19_06393 0.34 -1.3
159,427 + MPMX19_06393 0.37 -0.5
159,427 + MPMX19_06393 0.37 -1.0
159,427 + MPMX19_06393 0.37 +0.3
159,427 + MPMX19_06393 0.37 -2.2
159,427 + MPMX19_06393 0.37 -0.3
159,427 + MPMX19_06393 0.37 -0.9
159,427 + MPMX19_06393 0.37 -2.4
159,427 + MPMX19_06393 0.37 +0.6
159,427 + MPMX19_06393 0.37 -0.8
159,427 + MPMX19_06393 0.37 -0.1
159,427 + MPMX19_06393 0.37 -1.0
159,427 + MPMX19_06393 0.37 +0.7
159,427 + MPMX19_06393 0.37 -0.4
159,427 + MPMX19_06393 0.37 -0.4
159,427 + MPMX19_06393 0.37 -0.4
159,427 + MPMX19_06393 0.37 -0.7
159,427 + MPMX19_06393 0.37 -1.4
159,428 - MPMX19_06393 0.38 -1.0
159,428 - MPMX19_06393 0.38 -0.4
159,428 - MPMX19_06393 0.38 -0.1
159,428 - MPMX19_06393 0.38 -1.3
159,428 - MPMX19_06393 0.38 -1.1
159,428 - MPMX19_06393 0.38 +0.3
159,428 - MPMX19_06393 0.38 +0.2
159,428 - MPMX19_06393 0.38 -0.1
159,428 - MPMX19_06393 0.38 +1.7
159,428 - MPMX19_06393 0.38 -0.4
159,428 - MPMX19_06393 0.38 -0.7
159,428 - MPMX19_06393 0.38 -1.5
159,428 - MPMX19_06393 0.38 -1.5
159,428 - MPMX19_06393 0.38 +1.3
159,428 - MPMX19_06393 0.38 -1.7
159,502 + MPMX19_06393 0.48 -0.3
159,503 - MPMX19_06393 0.48 -0.5
159,538 + MPMX19_06393 0.53 -0.4
159,538 + MPMX19_06393 0.53 -1.1
159,538 + MPMX19_06393 0.53 -1.6
159,538 + MPMX19_06393 0.53 -0.8
159,539 - MPMX19_06393 0.53 -0.0
159,539 - MPMX19_06393 0.53 -1.2
159,539 - MPMX19_06393 0.53 -0.4
159,539 - MPMX19_06393 0.53 -0.0
159,539 - MPMX19_06393 0.53 -1.0
159,539 - MPMX19_06393 0.53 -3.1
159,565 + MPMX19_06393 0.56 -0.9
159,802 + MPMX19_06393 0.89 -0.2
159,802 + MPMX19_06393 0.89 -0.2
159,802 + MPMX19_06393 0.89 -0.7
159,802 + MPMX19_06393 0.89 +0.0
159,802 + MPMX19_06393 0.89 +0.1
159,802 + MPMX19_06393 0.89 -1.2
159,802 + MPMX19_06393 0.89 +0.5
159,802 + MPMX19_06393 0.89 -0.5
159,802 + MPMX19_06393 0.89 -2.2
159,803 - MPMX19_06393 0.89 -1.4
159,803 - MPMX19_06393 0.89 -0.0
159,803 - MPMX19_06393 0.89 -1.4
159,803 - MPMX19_06393 0.89 +0.3
159,803 - MPMX19_06393 0.89 +0.1
159,803 - MPMX19_06393 0.89 -0.8
159,803 - MPMX19_06393 0.89 -0.4
159,803 - MPMX19_06393 0.89 -0.5
159,803 - MPMX19_06393 0.89 -0.2
159,803 - MPMX19_06393 0.89 -0.5
159,803 - MPMX19_06393 0.89 +1.3
159,803 - MPMX19_06393 0.89 -0.8
159,851 - -0.4
160,187 + MPMX19_06394 0.43 -0.3
160,187 + MPMX19_06394 0.43 +0.5
160,187 + MPMX19_06394 0.43 -0.6
160,187 + MPMX19_06394 0.43 -0.6
160,187 + MPMX19_06394 0.43 +0.6
160,187 + MPMX19_06394 0.43 -2.0
160,187 + MPMX19_06394 0.43 -0.2
160,187 + MPMX19_06394 0.43 -0.5
160,188 - MPMX19_06394 0.43 -0.6
160,188 - MPMX19_06394 0.43 +0.7
160,188 - MPMX19_06394 0.43 -0.6
160,188 - MPMX19_06394 0.43 -1.7
160,188 - MPMX19_06394 0.43 -2.2
160,188 - MPMX19_06394 0.43 -1.0
160,336 + MPMX19_06394 0.65 -0.1
160,336 + MPMX19_06394 0.65 +0.0
160,336 + MPMX19_06394 0.65 -1.2
160,336 + MPMX19_06394 0.65 -1.3
160,336 + MPMX19_06394 0.65 -2.0
160,336 + MPMX19_06394 0.65 +0.3
160,336 + MPMX19_06394 0.65 +0.2
160,336 + MPMX19_06394 0.65 -1.4
160,336 + MPMX19_06394 0.65 +0.1
160,337 - MPMX19_06394 0.65 -0.5
160,337 - MPMX19_06394 0.65 -2.3
160,337 - MPMX19_06394 0.65 -1.5
160,337 - MPMX19_06394 0.65 -0.1
160,337 - MPMX19_06394 0.65 +0.3
160,337 - MPMX19_06394 0.65 -1.9
160,337 - MPMX19_06394 0.65 -0.7
160,337 - MPMX19_06394 0.65 -0.9
160,337 - MPMX19_06394 0.65 +0.5
160,337 - MPMX19_06394 0.65 +1.3
160,338 + MPMX19_06394 0.65 -0.8
160,338 + MPMX19_06394 0.65 -1.4
160,338 + MPMX19_06394 0.65 -1.3
160,338 + MPMX19_06394 0.65 +0.1
160,339 - MPMX19_06394 0.65 -0.4
160,339 - MPMX19_06394 0.65 +1.9
160,339 - MPMX19_06394 0.65 +1.0
160,417 + MPMX19_06394 0.77 -0.1
160,417 + MPMX19_06394 0.77 -1.3
160,417 + MPMX19_06394 0.77 -0.5
160,417 + MPMX19_06394 0.77 -0.3
160,418 - MPMX19_06394 0.77 -1.1
160,418 - MPMX19_06394 0.77 -0.1
160,418 - MPMX19_06394 0.77 +0.9
160,546 + -0.9
160,546 + -1.0
160,546 + +0.5
160,546 + -1.3
160,547 - -0.4
160,702 + MPMX19_06395 0.14 -1.4
160,703 - MPMX19_06395 0.15 -0.4
160,830 + MPMX19_06395 0.44 +0.3
160,830 + MPMX19_06395 0.44 +0.9
160,831 - MPMX19_06395 0.45 +1.3
160,831 - MPMX19_06395 0.45 -0.9
160,831 - MPMX19_06395 0.45 +1.7
160,847 + MPMX19_06395 0.48 -0.6

Or see this region's nucleotide sequence