Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06331

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06330 and MPMX19_06331 are separated by 757 nucleotidesMPMX19_06331 and MPMX19_06332 overlap by 4 nucleotides MPMX19_06330: MPMX19_06330 - hypothetical protein, at 95,717 to 97,420 _06330 MPMX19_06331: MPMX19_06331 - hypothetical protein, at 98,178 to 99,077 _06331 MPMX19_06332: MPMX19_06332 - hypothetical protein, at 99,074 to 100,543 _06332 Position (kb) 98 99 100Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 97.206 kb on + strand, within MPMX19_06330at 97.224 kb on + strand, within MPMX19_06330at 97.224 kb on + strand, within MPMX19_06330at 97.224 kb on + strand, within MPMX19_06330at 97.224 kb on + strand, within MPMX19_06330at 97.224 kb on + strand, within MPMX19_06330at 97.225 kb on - strand, within MPMX19_06330at 97.225 kb on - strand, within MPMX19_06330at 97.225 kb on - strand, within MPMX19_06330at 97.241 kb on - strand, within MPMX19_06330at 97.241 kb on - strand, within MPMX19_06330at 97.250 kb on + strandat 97.250 kb on + strandat 97.250 kb on + strandat 97.250 kb on + strandat 97.250 kb on + strandat 97.413 kb on - strandat 97.413 kb on - strandat 97.460 kb on + strandat 97.549 kb on + strandat 97.549 kb on + strandat 97.549 kb on + strandat 97.549 kb on + strandat 97.549 kb on + strandat 97.549 kb on + strandat 97.550 kb on - strandat 97.550 kb on - strandat 97.550 kb on - strandat 97.550 kb on - strandat 97.588 kb on - strandat 97.594 kb on + strandat 97.626 kb on + strandat 97.626 kb on + strandat 97.626 kb on + strandat 97.626 kb on + strandat 97.626 kb on + strandat 97.627 kb on - strandat 97.627 kb on - strandat 97.627 kb on - strandat 97.627 kb on - strandat 97.629 kb on + strandat 97.672 kb on + strandat 97.672 kb on + strandat 97.672 kb on + strandat 97.672 kb on + strandat 97.672 kb on + strandat 97.672 kb on + strandat 97.673 kb on - strandat 97.673 kb on - strandat 97.694 kb on + strandat 98.103 kb on - strandat 98.373 kb on + strand, within MPMX19_06331at 98.373 kb on + strand, within MPMX19_06331at 98.374 kb on - strand, within MPMX19_06331at 98.374 kb on - strand, within MPMX19_06331at 98.424 kb on + strand, within MPMX19_06331at 98.425 kb on - strand, within MPMX19_06331at 98.425 kb on - strand, within MPMX19_06331at 98.490 kb on + strand, within MPMX19_06331at 98.490 kb on + strand, within MPMX19_06331at 98.491 kb on - strand, within MPMX19_06331at 98.491 kb on - strand, within MPMX19_06331at 98.553 kb on + strand, within MPMX19_06331at 98.553 kb on + strand, within MPMX19_06331at 98.554 kb on - strand, within MPMX19_06331at 98.554 kb on - strand, within MPMX19_06331at 98.554 kb on - strand, within MPMX19_06331at 98.562 kb on + strand, within MPMX19_06331at 98.562 kb on + strand, within MPMX19_06331at 98.562 kb on + strand, within MPMX19_06331at 98.562 kb on + strand, within MPMX19_06331at 98.562 kb on + strand, within MPMX19_06331at 98.562 kb on + strand, within MPMX19_06331at 98.562 kb on + strand, within MPMX19_06331at 98.562 kb on + strand, within MPMX19_06331at 98.562 kb on + strand, within MPMX19_06331at 98.562 kb on + strand, within MPMX19_06331at 98.562 kb on + strand, within MPMX19_06331at 98.562 kb on + strand, within MPMX19_06331at 98.562 kb on + strand, within MPMX19_06331at 98.562 kb on + strand, within MPMX19_06331at 98.562 kb on + strand, within MPMX19_06331at 98.562 kb on + strand, within MPMX19_06331at 98.562 kb on + strand, within MPMX19_06331at 98.562 kb on + strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.563 kb on - strand, within MPMX19_06331at 98.730 kb on + strand, within MPMX19_06331at 98.730 kb on + strand, within MPMX19_06331at 98.730 kb on + strand, within MPMX19_06331at 98.730 kb on + strand, within MPMX19_06331at 98.731 kb on - strand, within MPMX19_06331at 98.731 kb on - strand, within MPMX19_06331at 98.731 kb on - strand, within MPMX19_06331at 98.731 kb on - strand, within MPMX19_06331at 98.731 kb on - strand, within MPMX19_06331at 98.796 kb on + strand, within MPMX19_06331at 98.796 kb on + strand, within MPMX19_06331at 98.796 kb on + strand, within MPMX19_06331at 98.796 kb on + strand, within MPMX19_06331at 98.796 kb on + strand, within MPMX19_06331at 98.796 kb on + strand, within MPMX19_06331at 98.796 kb on + strand, within MPMX19_06331at 98.796 kb on + strand, within MPMX19_06331at 98.797 kb on - strand, within MPMX19_06331at 98.797 kb on - strand, within MPMX19_06331at 98.797 kb on - strand, within MPMX19_06331at 98.797 kb on - strand, within MPMX19_06331at 98.797 kb on - strand, within MPMX19_06331at 98.797 kb on - strand, within MPMX19_06331at 98.797 kb on - strand, within MPMX19_06331at 98.797 kb on - strand, within MPMX19_06331at 98.797 kb on - strand, within MPMX19_06331at 99.170 kb on + strandat 99.170 kb on + strandat 99.170 kb on + strandat 99.170 kb on + strandat 99.170 kb on + strandat 99.170 kb on + strandat 99.170 kb on + strandat 99.170 kb on + strandat 99.171 kb on - strandat 99.171 kb on - strandat 99.171 kb on - strandat 99.171 kb on - strandat 99.171 kb on - strandat 99.171 kb on - strandat 99.171 kb on - strandat 99.171 kb on - strandat 99.404 kb on + strand, within MPMX19_06332at 99.404 kb on + strand, within MPMX19_06332at 99.648 kb on - strand, within MPMX19_06332at 99.743 kb on + strand, within MPMX19_06332at 99.743 kb on + strand, within MPMX19_06332at 99.744 kb on - strand, within MPMX19_06332at 99.779 kb on + strand, within MPMX19_06332at 99.780 kb on - strand, within MPMX19_06332at 99.938 kb on - strand, within MPMX19_06332at 100.046 kb on + strand, within MPMX19_06332at 100.046 kb on + strand, within MPMX19_06332at 100.046 kb on + strand, within MPMX19_06332

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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97,206 + MPMX19_06330 0.87 +1.1
97,224 + MPMX19_06330 0.88 -0.5
97,224 + MPMX19_06330 0.88 +0.6
97,224 + MPMX19_06330 0.88 +1.7
97,224 + MPMX19_06330 0.88 -3.1
97,224 + MPMX19_06330 0.88 +0.5
97,225 - MPMX19_06330 0.88 -0.6
97,225 - MPMX19_06330 0.88 +0.1
97,225 - MPMX19_06330 0.88 -1.1
97,241 - MPMX19_06330 0.89 -0.5
97,241 - MPMX19_06330 0.89 -2.5
97,250 + -2.3
97,250 + -0.6
97,250 + -2.1
97,250 + -0.5
97,250 + -1.4
97,413 - -1.4
97,413 - -0.7
97,460 + -0.3
97,549 + -1.4
97,549 + -1.3
97,549 + -0.9
97,549 + +0.0
97,549 + +0.1
97,549 + +0.6
97,550 - -0.4
97,550 - +0.7
97,550 - -0.1
97,550 - -0.7
97,588 - -1.3
97,594 + -1.2
97,626 + -0.7
97,626 + -0.5
97,626 + -1.0
97,626 + -0.9
97,626 + -0.5
97,627 - +0.1
97,627 - -0.9
97,627 - -2.2
97,627 - -3.0
97,629 + -1.3
97,672 + +0.1
97,672 + -0.9
97,672 + +0.5
97,672 + -2.7
97,672 + -0.1
97,672 + -0.9
97,673 - -0.6
97,673 - -0.3
97,694 + -1.2
98,103 - +1.1
98,373 + MPMX19_06331 0.22 +1.2
98,373 + MPMX19_06331 0.22 -2.1
98,374 - MPMX19_06331 0.22 -0.9
98,374 - MPMX19_06331 0.22 -0.2
98,424 + MPMX19_06331 0.27 +0.3
98,425 - MPMX19_06331 0.27 -0.6
98,425 - MPMX19_06331 0.27 -0.5
98,490 + MPMX19_06331 0.35 -0.5
98,490 + MPMX19_06331 0.35 +0.5
98,491 - MPMX19_06331 0.35 +1.9
98,491 - MPMX19_06331 0.35 +0.3
98,553 + MPMX19_06331 0.42 +0.7
98,553 + MPMX19_06331 0.42 -2.2
98,554 - MPMX19_06331 0.42 -2.0
98,554 - MPMX19_06331 0.42 -2.0
98,554 - MPMX19_06331 0.42 -2.0
98,562 + MPMX19_06331 0.43 +0.9
98,562 + MPMX19_06331 0.43 -2.5
98,562 + MPMX19_06331 0.43 +0.0
98,562 + MPMX19_06331 0.43 -0.5
98,562 + MPMX19_06331 0.43 -1.0
98,562 + MPMX19_06331 0.43 +0.3
98,562 + MPMX19_06331 0.43 -0.8
98,562 + MPMX19_06331 0.43 +0.6
98,562 + MPMX19_06331 0.43 +0.1
98,562 + MPMX19_06331 0.43 +0.8
98,562 + MPMX19_06331 0.43 +0.2
98,562 + MPMX19_06331 0.43 +0.6
98,562 + MPMX19_06331 0.43 -0.1
98,562 + MPMX19_06331 0.43 -1.1
98,562 + MPMX19_06331 0.43 -0.3
98,562 + MPMX19_06331 0.43 +0.3
98,562 + MPMX19_06331 0.43 -0.9
98,562 + MPMX19_06331 0.43 -0.2
98,563 - MPMX19_06331 0.43 -1.5
98,563 - MPMX19_06331 0.43 +0.2
98,563 - MPMX19_06331 0.43 -0.0
98,563 - MPMX19_06331 0.43 +0.5
98,563 - MPMX19_06331 0.43 -0.8
98,563 - MPMX19_06331 0.43 -0.3
98,563 - MPMX19_06331 0.43 -0.9
98,563 - MPMX19_06331 0.43 +0.9
98,563 - MPMX19_06331 0.43 -1.3
98,563 - MPMX19_06331 0.43 -0.5
98,563 - MPMX19_06331 0.43 +0.8
98,563 - MPMX19_06331 0.43 +1.2
98,563 - MPMX19_06331 0.43 +0.7
98,563 - MPMX19_06331 0.43 -1.0
98,563 - MPMX19_06331 0.43 +1.4
98,563 - MPMX19_06331 0.43 +0.0
98,563 - MPMX19_06331 0.43 +0.9
98,563 - MPMX19_06331 0.43 -0.2
98,563 - MPMX19_06331 0.43 +0.3
98,563 - MPMX19_06331 0.43 -0.5
98,563 - MPMX19_06331 0.43 -0.0
98,563 - MPMX19_06331 0.43 -0.3
98,730 + MPMX19_06331 0.61 -0.1
98,730 + MPMX19_06331 0.61 -1.4
98,730 + MPMX19_06331 0.61 +1.1
98,730 + MPMX19_06331 0.61 -0.2
98,731 - MPMX19_06331 0.61 +2.2
98,731 - MPMX19_06331 0.61 -0.1
98,731 - MPMX19_06331 0.61 -1.4
98,731 - MPMX19_06331 0.61 +0.9
98,731 - MPMX19_06331 0.61 -1.7
98,796 + MPMX19_06331 0.69 -1.0
98,796 + MPMX19_06331 0.69 -1.8
98,796 + MPMX19_06331 0.69 -1.4
98,796 + MPMX19_06331 0.69 -1.3
98,796 + MPMX19_06331 0.69 -0.6
98,796 + MPMX19_06331 0.69 -1.3
98,796 + MPMX19_06331 0.69 +0.2
98,796 + MPMX19_06331 0.69 -0.7
98,797 - MPMX19_06331 0.69 +0.5
98,797 - MPMX19_06331 0.69 -0.7
98,797 - MPMX19_06331 0.69 -1.1
98,797 - MPMX19_06331 0.69 -0.3
98,797 - MPMX19_06331 0.69 -1.5
98,797 - MPMX19_06331 0.69 +0.9
98,797 - MPMX19_06331 0.69 -0.7
98,797 - MPMX19_06331 0.69 +0.1
98,797 - MPMX19_06331 0.69 +0.7
99,170 + -1.7
99,170 + +0.0
99,170 + -2.1
99,170 + -0.2
99,170 + -0.2
99,170 + -2.5
99,170 + +0.3
99,170 + +0.7
99,171 - -0.0
99,171 - -1.7
99,171 - -1.7
99,171 - -1.7
99,171 - -1.1
99,171 - -1.0
99,171 - -0.9
99,171 - -2.9
99,404 + MPMX19_06332 0.22 +0.3
99,404 + MPMX19_06332 0.22 +0.7
99,648 - MPMX19_06332 0.39 -0.7
99,743 + MPMX19_06332 0.46 -0.1
99,743 + MPMX19_06332 0.46 +0.9
99,744 - MPMX19_06332 0.46 -0.3
99,779 + MPMX19_06332 0.48 -0.8
99,780 - MPMX19_06332 0.48 -3.4
99,938 - MPMX19_06332 0.59 -0.3
100,046 + MPMX19_06332 0.66 -0.5
100,046 + MPMX19_06332 0.66 -0.2
100,046 + MPMX19_06332 0.66 +2.5

Or see this region's nucleotide sequence