Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06214

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06213 and MPMX19_06214 are separated by 108 nucleotidesMPMX19_06214 and MPMX19_06215 overlap by 1 nucleotidesMPMX19_06215 and MPMX19_06216 overlap by 4 nucleotides MPMX19_06213: MPMX19_06213 - Cardiolipin synthase B, at 395,027 to 396,661 _06213 MPMX19_06214: MPMX19_06214 - Aldose 1-epimerase, at 396,770 to 397,801 _06214 MPMX19_06215: MPMX19_06215 - Inner membrane ABC transporter permease protein YjfF, at 397,801 to 398,787 _06215 MPMX19_06216: MPMX19_06216 - Inner membrane ABC transporter permease protein YtfT, at 398,784 to 399,827 _06216 Position (kb) 396 397 398Strain fitness (log2 ratio) -2 -1 0 1 2at 395.770 kb on - strand, within MPMX19_06213at 395.770 kb on - strand, within MPMX19_06213at 395.784 kb on + strand, within MPMX19_06213at 395.784 kb on + strand, within MPMX19_06213at 395.784 kb on + strand, within MPMX19_06213at 395.784 kb on + strand, within MPMX19_06213at 395.784 kb on + strand, within MPMX19_06213at 395.785 kb on - strand, within MPMX19_06213at 395.785 kb on - strand, within MPMX19_06213at 395.785 kb on - strand, within MPMX19_06213at 395.820 kb on + strand, within MPMX19_06213at 395.820 kb on + strand, within MPMX19_06213at 395.820 kb on + strand, within MPMX19_06213at 395.820 kb on + strand, within MPMX19_06213at 395.820 kb on + strand, within MPMX19_06213at 395.820 kb on + strand, within MPMX19_06213at 395.820 kb on + strand, within MPMX19_06213at 395.820 kb on + strand, within MPMX19_06213at 395.821 kb on - strand, within MPMX19_06213at 395.821 kb on - strand, within MPMX19_06213at 395.821 kb on - strand, within MPMX19_06213at 396.078 kb on + strand, within MPMX19_06213at 396.078 kb on + strand, within MPMX19_06213at 396.078 kb on + strand, within MPMX19_06213at 396.078 kb on + strand, within MPMX19_06213at 396.078 kb on + strand, within MPMX19_06213at 396.079 kb on - strand, within MPMX19_06213at 396.079 kb on - strand, within MPMX19_06213at 396.516 kb on + strandat 396.516 kb on + strandat 396.517 kb on - strandat 396.662 kb on - strandat 396.807 kb on + strandat 396.807 kb on + strandat 396.807 kb on + strandat 396.807 kb on + strandat 396.807 kb on + strandat 396.808 kb on - strandat 396.808 kb on - strandat 396.808 kb on - strandat 396.808 kb on - strandat 396.808 kb on - strandat 396.808 kb on - strandat 396.808 kb on - strandat 396.808 kb on - strandat 396.808 kb on - strandat 396.808 kb on - strandat 396.906 kb on + strand, within MPMX19_06214at 396.907 kb on - strand, within MPMX19_06214at 396.946 kb on - strand, within MPMX19_06214at 396.957 kb on + strand, within MPMX19_06214at 396.957 kb on + strand, within MPMX19_06214at 396.957 kb on + strand, within MPMX19_06214at 396.958 kb on - strand, within MPMX19_06214at 396.958 kb on - strand, within MPMX19_06214at 396.958 kb on - strand, within MPMX19_06214at 396.958 kb on - strand, within MPMX19_06214at 397.269 kb on + strand, within MPMX19_06214at 397.269 kb on + strand, within MPMX19_06214at 397.269 kb on + strand, within MPMX19_06214at 397.269 kb on + strand, within MPMX19_06214at 397.269 kb on + strand, within MPMX19_06214at 397.269 kb on + strand, within MPMX19_06214at 397.269 kb on + strand, within MPMX19_06214at 397.269 kb on + strand, within MPMX19_06214at 397.270 kb on - strand, within MPMX19_06214at 397.270 kb on - strand, within MPMX19_06214at 397.270 kb on - strand, within MPMX19_06214at 397.270 kb on - strand, within MPMX19_06214at 397.270 kb on - strand, within MPMX19_06214at 397.270 kb on - strand, within MPMX19_06214at 397.270 kb on - strand, within MPMX19_06214at 397.270 kb on - strand, within MPMX19_06214at 397.270 kb on - strand, within MPMX19_06214at 397.270 kb on - strand, within MPMX19_06214at 397.527 kb on + strand, within MPMX19_06214at 397.599 kb on + strand, within MPMX19_06214at 397.599 kb on + strand, within MPMX19_06214at 397.600 kb on - strand, within MPMX19_06214at 397.600 kb on - strand, within MPMX19_06214at 397.600 kb on - strand, within MPMX19_06214at 397.617 kb on + strand, within MPMX19_06214at 397.617 kb on + strand, within MPMX19_06214at 397.617 kb on + strand, within MPMX19_06214at 397.618 kb on - strand, within MPMX19_06214at 397.618 kb on - strand, within MPMX19_06214at 397.618 kb on - strand, within MPMX19_06214at 397.618 kb on - strand, within MPMX19_06214at 397.618 kb on - strand, within MPMX19_06214at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.988 kb on + strand, within MPMX19_06215at 397.988 kb on + strand, within MPMX19_06215at 397.988 kb on + strand, within MPMX19_06215at 397.988 kb on + strand, within MPMX19_06215at 397.988 kb on + strand, within MPMX19_06215at 397.988 kb on + strand, within MPMX19_06215at 397.989 kb on - strand, within MPMX19_06215at 397.989 kb on - strand, within MPMX19_06215at 398.073 kb on - strand, within MPMX19_06215at 398.087 kb on + strand, within MPMX19_06215at 398.088 kb on - strand, within MPMX19_06215at 398.088 kb on - strand, within MPMX19_06215at 398.088 kb on - strand, within MPMX19_06215at 398.088 kb on - strand, within MPMX19_06215at 398.138 kb on + strand, within MPMX19_06215at 398.138 kb on + strand, within MPMX19_06215at 398.138 kb on + strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.211 kb on - strand, within MPMX19_06215at 398.211 kb on - strand, within MPMX19_06215at 398.211 kb on - strand, within MPMX19_06215at 398.342 kb on + strand, within MPMX19_06215at 398.342 kb on + strand, within MPMX19_06215at 398.342 kb on + strand, within MPMX19_06215at 398.342 kb on + strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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395,770 - MPMX19_06213 0.45 -0.9
395,770 - MPMX19_06213 0.45 +0.5
395,784 + MPMX19_06213 0.46 +0.5
395,784 + MPMX19_06213 0.46 -0.8
395,784 + MPMX19_06213 0.46 +0.6
395,784 + MPMX19_06213 0.46 -0.5
395,784 + MPMX19_06213 0.46 -1.7
395,785 - MPMX19_06213 0.46 +0.3
395,785 - MPMX19_06213 0.46 +0.4
395,785 - MPMX19_06213 0.46 -0.7
395,820 + MPMX19_06213 0.49 +0.3
395,820 + MPMX19_06213 0.49 -1.3
395,820 + MPMX19_06213 0.49 -0.2
395,820 + MPMX19_06213 0.49 -0.3
395,820 + MPMX19_06213 0.49 -0.8
395,820 + MPMX19_06213 0.49 +0.1
395,820 + MPMX19_06213 0.49 +0.7
395,820 + MPMX19_06213 0.49 -0.5
395,821 - MPMX19_06213 0.49 -0.0
395,821 - MPMX19_06213 0.49 -0.2
395,821 - MPMX19_06213 0.49 +0.5
396,078 + MPMX19_06213 0.64 -0.2
396,078 + MPMX19_06213 0.64 -0.8
396,078 + MPMX19_06213 0.64 -1.3
396,078 + MPMX19_06213 0.64 -0.5
396,078 + MPMX19_06213 0.64 -1.0
396,079 - MPMX19_06213 0.64 +0.2
396,079 - MPMX19_06213 0.64 -0.2
396,516 + -0.0
396,516 + -0.8
396,517 - -1.5
396,662 - +0.4
396,807 + -0.0
396,807 + -0.7
396,807 + -1.2
396,807 + +1.0
396,807 + +1.4
396,808 - +0.3
396,808 - +1.2
396,808 - +0.2
396,808 - +1.7
396,808 - -1.1
396,808 - -0.6
396,808 - -0.5
396,808 - -0.1
396,808 - -2.0
396,808 - -0.4
396,906 + MPMX19_06214 0.13 -1.7
396,907 - MPMX19_06214 0.13 +0.6
396,946 - MPMX19_06214 0.17 -1.0
396,957 + MPMX19_06214 0.18 -0.1
396,957 + MPMX19_06214 0.18 +0.4
396,957 + MPMX19_06214 0.18 -0.8
396,958 - MPMX19_06214 0.18 +1.3
396,958 - MPMX19_06214 0.18 -1.3
396,958 - MPMX19_06214 0.18 -1.7
396,958 - MPMX19_06214 0.18 -0.6
397,269 + MPMX19_06214 0.48 -1.2
397,269 + MPMX19_06214 0.48 -0.5
397,269 + MPMX19_06214 0.48 +0.6
397,269 + MPMX19_06214 0.48 +0.8
397,269 + MPMX19_06214 0.48 +0.7
397,269 + MPMX19_06214 0.48 -1.0
397,269 + MPMX19_06214 0.48 +0.2
397,269 + MPMX19_06214 0.48 +0.6
397,270 - MPMX19_06214 0.48 +0.2
397,270 - MPMX19_06214 0.48 -0.2
397,270 - MPMX19_06214 0.48 -0.5
397,270 - MPMX19_06214 0.48 +0.1
397,270 - MPMX19_06214 0.48 -0.3
397,270 - MPMX19_06214 0.48 -1.2
397,270 - MPMX19_06214 0.48 +0.6
397,270 - MPMX19_06214 0.48 +0.7
397,270 - MPMX19_06214 0.48 -0.2
397,270 - MPMX19_06214 0.48 -1.1
397,527 + MPMX19_06214 0.73 -1.5
397,599 + MPMX19_06214 0.80 +2.2
397,599 + MPMX19_06214 0.80 -0.0
397,600 - MPMX19_06214 0.80 -0.3
397,600 - MPMX19_06214 0.80 +0.2
397,600 - MPMX19_06214 0.80 -0.6
397,617 + MPMX19_06214 0.82 +0.6
397,617 + MPMX19_06214 0.82 +0.2
397,617 + MPMX19_06214 0.82 +0.5
397,618 - MPMX19_06214 0.82 +0.3
397,618 - MPMX19_06214 0.82 -0.8
397,618 - MPMX19_06214 0.82 +0.4
397,618 - MPMX19_06214 0.82 +0.1
397,618 - MPMX19_06214 0.82 -0.0
397,937 + MPMX19_06215 0.14 +0.2
397,937 + MPMX19_06215 0.14 +0.7
397,937 + MPMX19_06215 0.14 -0.1
397,937 + MPMX19_06215 0.14 +0.8
397,937 + MPMX19_06215 0.14 -0.2
397,937 + MPMX19_06215 0.14 -0.6
397,937 + MPMX19_06215 0.14 +1.2
397,937 + MPMX19_06215 0.14 -0.2
397,937 + MPMX19_06215 0.14 -0.0
397,937 + MPMX19_06215 0.14 +1.2
397,937 + MPMX19_06215 0.14 +2.7
397,937 + MPMX19_06215 0.14 -1.3
397,937 + MPMX19_06215 0.14 -0.9
397,937 + MPMX19_06215 0.14 -0.2
397,937 + MPMX19_06215 0.14 +0.2
397,937 + MPMX19_06215 0.14 +1.3
397,937 + MPMX19_06215 0.14 -0.7
397,937 + MPMX19_06215 0.14 +0.0
397,937 + MPMX19_06215 0.14 -0.5
397,937 + MPMX19_06215 0.14 -1.2
397,938 - MPMX19_06215 0.14 -2.3
397,938 - MPMX19_06215 0.14 +0.8
397,938 - MPMX19_06215 0.14 -0.5
397,938 - MPMX19_06215 0.14 -0.2
397,938 - MPMX19_06215 0.14 +0.3
397,938 - MPMX19_06215 0.14 -0.5
397,938 - MPMX19_06215 0.14 -0.1
397,938 - MPMX19_06215 0.14 +0.8
397,938 - MPMX19_06215 0.14 -1.5
397,938 - MPMX19_06215 0.14 +0.3
397,938 - MPMX19_06215 0.14 +0.4
397,938 - MPMX19_06215 0.14 +0.1
397,938 - MPMX19_06215 0.14 -0.7
397,938 - MPMX19_06215 0.14 -1.6
397,938 - MPMX19_06215 0.14 +0.2
397,938 - MPMX19_06215 0.14 +0.4
397,938 - MPMX19_06215 0.14 -0.7
397,938 - MPMX19_06215 0.14 -1.9
397,938 - MPMX19_06215 0.14 +0.2
397,938 - MPMX19_06215 0.14 -0.3
397,938 - MPMX19_06215 0.14 +1.8
397,938 - MPMX19_06215 0.14 +0.4
397,938 - MPMX19_06215 0.14 +0.5
397,938 - MPMX19_06215 0.14 -1.2
397,988 + MPMX19_06215 0.19 +1.4
397,988 + MPMX19_06215 0.19 -1.5
397,988 + MPMX19_06215 0.19 -0.8
397,988 + MPMX19_06215 0.19 -0.6
397,988 + MPMX19_06215 0.19 -0.3
397,988 + MPMX19_06215 0.19 -1.1
397,989 - MPMX19_06215 0.19 -0.6
397,989 - MPMX19_06215 0.19 -0.7
398,073 - MPMX19_06215 0.28 -0.3
398,087 + MPMX19_06215 0.29 -0.8
398,088 - MPMX19_06215 0.29 +1.0
398,088 - MPMX19_06215 0.29 -2.5
398,088 - MPMX19_06215 0.29 -0.2
398,088 - MPMX19_06215 0.29 -0.3
398,138 + MPMX19_06215 0.34 +1.0
398,138 + MPMX19_06215 0.34 +1.0
398,138 + MPMX19_06215 0.34 +1.0
398,139 - MPMX19_06215 0.34 +0.2
398,139 - MPMX19_06215 0.34 +1.0
398,139 - MPMX19_06215 0.34 +0.2
398,139 - MPMX19_06215 0.34 -0.3
398,139 - MPMX19_06215 0.34 -1.2
398,139 - MPMX19_06215 0.34 -0.3
398,139 - MPMX19_06215 0.34 -0.3
398,139 - MPMX19_06215 0.34 +0.4
398,139 - MPMX19_06215 0.34 -0.6
398,211 - MPMX19_06215 0.42 -1.0
398,211 - MPMX19_06215 0.42 -0.0
398,211 - MPMX19_06215 0.42 +0.4
398,342 + MPMX19_06215 0.55 -0.9
398,342 + MPMX19_06215 0.55 +1.3
398,342 + MPMX19_06215 0.55 +0.8
398,342 + MPMX19_06215 0.55 -1.3
398,343 - MPMX19_06215 0.55 +0.4
398,343 - MPMX19_06215 0.55 +1.8
398,343 - MPMX19_06215 0.55 -2.2
398,343 - MPMX19_06215 0.55 -1.2
398,343 - MPMX19_06215 0.55 -0.6
398,343 - MPMX19_06215 0.55 +0.4
398,343 - MPMX19_06215 0.55 +0.6

Or see this region's nucleotide sequence