Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06193 and MPMX19_06194 are separated by 11 nucleotides MPMX19_06194 and MPMX19_06195 are separated by 24 nucleotides MPMX19_06195 and MPMX19_06196 are separated by 116 nucleotides MPMX19_06196 and MPMX19_06197 overlap by 4 nucleotides MPMX19_06197 and MPMX19_06198 are separated by 72 nucleotides
MPMX19_06193: MPMX19_06193 - Flagellar hook-basal body complex protein FliE, at 382,243 to 382,602
_06193
MPMX19_06194: MPMX19_06194 - Flagellar basal-body rod protein FlgC, at 382,614 to 383,033
_06194
MPMX19_06195: MPMX19_06195 - hypothetical protein, at 383,058 to 383,450
_06195
MPMX19_06196: MPMX19_06196 - Flagellum-specific ATP synthase, at 383,567 to 384,934
_06196
MPMX19_06197: MPMX19_06197 - hypothetical protein, at 384,931 to 385,536
_06197
MPMX19_06198: MPMX19_06198 - hypothetical protein, at 385,609 to 385,992
_06198
Position (kb) 383
384
385 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.789 kb on + strand, within MPMX19_06194 at 382.789 kb on + strand, within MPMX19_06194 at 382.789 kb on + strand, within MPMX19_06194 at 382.789 kb on + strand, within MPMX19_06194 at 382.790 kb on - strand, within MPMX19_06194 at 382.898 kb on - strand, within MPMX19_06194 at 382.925 kb on + strand, within MPMX19_06194 at 382.925 kb on + strand, within MPMX19_06194 at 382.926 kb on - strand, within MPMX19_06194 at 383.050 kb on + strand at 383.050 kb on + strand at 383.051 kb on - strand at 383.051 kb on - strand at 383.051 kb on - strand at 383.051 kb on - strand at 383.051 kb on - strand at 383.051 kb on - strand at 383.339 kb on - strand, within MPMX19_06195 at 383.398 kb on + strand, within MPMX19_06195 at 383.398 kb on + strand, within MPMX19_06195 at 383.398 kb on + strand, within MPMX19_06195 at 383.399 kb on - strand, within MPMX19_06195 at 383.524 kb on + strand at 383.524 kb on + strand at 384.434 kb on + strand, within MPMX19_06196 at 384.434 kb on + strand, within MPMX19_06196 at 384.434 kb on + strand, within MPMX19_06196 at 384.434 kb on + strand, within MPMX19_06196 at 384.435 kb on - strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.743 kb on + strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.744 kb on - strand, within MPMX19_06196 at 384.779 kb on + strand, within MPMX19_06196 at 384.779 kb on + strand, within MPMX19_06196 at 384.780 kb on - strand, within MPMX19_06196 at 384.780 kb on - strand, within MPMX19_06196 at 384.780 kb on - strand, within MPMX19_06196 at 384.942 kb on + strand at 384.943 kb on - strand at 384.943 kb on - strand at 385.100 kb on - strand, within MPMX19_06197 at 385.100 kb on - strand, within MPMX19_06197 at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 382,753 + MPMX19_06194 0.33 +0.1 382,753 + MPMX19_06194 0.33 +1.0 382,753 + MPMX19_06194 0.33 +2.1 382,753 + MPMX19_06194 0.33 -0.2 382,753 + MPMX19_06194 0.33 -0.2 382,753 + MPMX19_06194 0.33 +0.3 382,753 + MPMX19_06194 0.33 -1.0 382,753 + MPMX19_06194 0.33 -1.6 382,754 - MPMX19_06194 0.33 -0.0 382,754 - MPMX19_06194 0.33 -0.2 382,754 - MPMX19_06194 0.33 -1.5 382,754 - MPMX19_06194 0.33 +0.5 382,754 - MPMX19_06194 0.33 -1.6 382,754 - MPMX19_06194 0.33 -0.0 382,754 - MPMX19_06194 0.33 -2.3 382,754 - MPMX19_06194 0.33 +0.2 382,754 - MPMX19_06194 0.33 -1.3 382,789 + MPMX19_06194 0.42 +0.6 382,789 + MPMX19_06194 0.42 +0.7 382,789 + MPMX19_06194 0.42 -1.6 382,789 + MPMX19_06194 0.42 +1.0 382,790 - MPMX19_06194 0.42 +0.6 382,898 - MPMX19_06194 0.68 +1.2 382,925 + MPMX19_06194 0.74 -1.0 382,925 + MPMX19_06194 0.74 -3.1 382,926 - MPMX19_06194 0.74 +1.0 383,050 + +1.1 383,050 + -0.6 383,051 - -1.7 383,051 - -1.2 383,051 - -0.2 383,051 - -0.8 383,051 - +0.8 383,051 - -1.5 383,339 - MPMX19_06195 0.72 -0.2 383,398 + MPMX19_06195 0.87 +0.3 383,398 + MPMX19_06195 0.87 +0.2 383,398 + MPMX19_06195 0.87 +0.4 383,399 - MPMX19_06195 0.87 -0.9 383,524 + -1.5 383,524 + +1.0 384,434 + MPMX19_06196 0.63 -0.2 384,434 + MPMX19_06196 0.63 -1.2 384,434 + MPMX19_06196 0.63 -0.5 384,434 + MPMX19_06196 0.63 -0.7 384,435 - MPMX19_06196 0.63 +0.4 384,743 + MPMX19_06196 0.86 -2.5 384,743 + MPMX19_06196 0.86 -0.4 384,743 + MPMX19_06196 0.86 -1.3 384,743 + MPMX19_06196 0.86 +0.0 384,743 + MPMX19_06196 0.86 +0.3 384,743 + MPMX19_06196 0.86 -0.6 384,743 + MPMX19_06196 0.86 -0.3 384,743 + MPMX19_06196 0.86 -0.8 384,744 - MPMX19_06196 0.86 +0.5 384,744 - MPMX19_06196 0.86 +0.2 384,744 - MPMX19_06196 0.86 -0.8 384,744 - MPMX19_06196 0.86 +0.4 384,744 - MPMX19_06196 0.86 -1.1 384,744 - MPMX19_06196 0.86 +0.1 384,744 - MPMX19_06196 0.86 +1.0 384,744 - MPMX19_06196 0.86 -0.2 384,744 - MPMX19_06196 0.86 -1.8 384,779 + MPMX19_06196 0.89 -0.8 384,779 + MPMX19_06196 0.89 -0.9 384,780 - MPMX19_06196 0.89 +1.2 384,780 - MPMX19_06196 0.89 +0.8 384,780 - MPMX19_06196 0.89 +1.0 384,942 + -0.9 384,943 - -0.3 384,943 - -0.4 385,100 - MPMX19_06197 0.28 -0.1 385,100 - MPMX19_06197 0.28 +0.9 385,477 + -0.5 385,477 + -1.1 385,477 + -1.2 385,477 + -0.4 385,477 + +2.2 385,477 + +0.4 385,477 + -0.3 385,477 + -0.8 385,478 - +1.4 385,478 - -0.3 385,478 - -1.6 385,478 - -0.5 385,478 - -0.8 385,478 - -0.6 385,750 + MPMX19_06198 0.37 -0.5 385,750 + MPMX19_06198 0.37 +1.2 385,750 + MPMX19_06198 0.37 -0.7 385,750 + MPMX19_06198 0.37 -0.2 385,750 + MPMX19_06198 0.37 -1.5 385,750 + MPMX19_06198 0.37 -0.5 385,750 + MPMX19_06198 0.37 -1.1 385,750 + MPMX19_06198 0.37 +0.4 385,750 + MPMX19_06198 0.37 -2.9 385,750 + MPMX19_06198 0.37 +1.0 385,751 - MPMX19_06198 0.37 -0.5 385,751 - MPMX19_06198 0.37 -0.6 385,751 - MPMX19_06198 0.37 -1.2 385,751 - MPMX19_06198 0.37 +0.2 385,751 - MPMX19_06198 0.37 +1.2
Or see this region's nucleotide sequence