Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05587

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05585 and MPMX19_05586 are separated by 21 nucleotidesMPMX19_05586 and MPMX19_05587 are separated by 236 nucleotidesMPMX19_05587 and MPMX19_05588 are separated by 14 nucleotides MPMX19_05585: MPMX19_05585 - hypothetical protein, at 296,465 to 297,127 _05585 MPMX19_05586: MPMX19_05586 - hypothetical protein, at 297,149 to 297,802 _05586 MPMX19_05587: MPMX19_05587 - Membrane lipoprotein TmpC, at 298,039 to 299,034 _05587 MPMX19_05588: MPMX19_05588 - Galactose/methyl galactoside import ATP-binding protein MglA, at 299,049 to 300,593 _05588 Position (kb) 298 299 300Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 297.642 kb on + strand, within MPMX19_05586at 297.642 kb on + strand, within MPMX19_05586at 297.642 kb on + strand, within MPMX19_05586at 297.642 kb on + strand, within MPMX19_05586at 297.642 kb on + strand, within MPMX19_05586at 297.643 kb on - strand, within MPMX19_05586at 297.643 kb on - strand, within MPMX19_05586at 297.643 kb on - strand, within MPMX19_05586at 297.643 kb on - strand, within MPMX19_05586at 297.825 kb on + strandat 297.905 kb on + strandat 297.905 kb on + strandat 297.906 kb on - strandat 298.050 kb on + strandat 298.050 kb on + strandat 298.050 kb on + strandat 298.050 kb on + strandat 298.050 kb on + strandat 298.051 kb on - strandat 298.051 kb on - strandat 298.051 kb on - strandat 298.051 kb on - strandat 298.051 kb on - strandat 298.051 kb on - strandat 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.189 kb on + strand, within MPMX19_05587at 298.190 kb on - strand, within MPMX19_05587at 298.190 kb on - strand, within MPMX19_05587at 298.190 kb on - strand, within MPMX19_05587at 298.190 kb on - strand, within MPMX19_05587at 298.190 kb on - strand, within MPMX19_05587at 298.190 kb on - strand, within MPMX19_05587at 298.191 kb on + strand, within MPMX19_05587at 298.192 kb on - strand, within MPMX19_05587at 298.232 kb on - strand, within MPMX19_05587at 298.550 kb on - strand, within MPMX19_05587at 298.837 kb on + strand, within MPMX19_05587at 298.837 kb on + strand, within MPMX19_05587at 298.837 kb on + strand, within MPMX19_05587at 298.837 kb on + strand, within MPMX19_05587at 298.838 kb on - strand, within MPMX19_05587at 298.919 kb on - strand, within MPMX19_05587at 298.919 kb on - strand, within MPMX19_05587at 299.226 kb on + strand, within MPMX19_05588at 299.226 kb on + strand, within MPMX19_05588at 299.226 kb on + strand, within MPMX19_05588at 299.227 kb on - strand, within MPMX19_05588at 299.227 kb on - strand, within MPMX19_05588at 299.232 kb on + strand, within MPMX19_05588at 299.232 kb on + strand, within MPMX19_05588at 299.232 kb on + strand, within MPMX19_05588at 299.232 kb on + strand, within MPMX19_05588at 299.233 kb on - strand, within MPMX19_05588at 299.233 kb on - strand, within MPMX19_05588at 299.233 kb on - strand, within MPMX19_05588at 299.541 kb on + strand, within MPMX19_05588at 299.541 kb on + strand, within MPMX19_05588

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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297,642 + MPMX19_05586 0.75 +0.9
297,642 + MPMX19_05586 0.75 +1.9
297,642 + MPMX19_05586 0.75 +0.3
297,642 + MPMX19_05586 0.75 +0.1
297,642 + MPMX19_05586 0.75 -1.1
297,643 - MPMX19_05586 0.76 +1.3
297,643 - MPMX19_05586 0.76 +1.3
297,643 - MPMX19_05586 0.76 +2.9
297,643 - MPMX19_05586 0.76 +0.6
297,825 + +0.1
297,905 + -0.2
297,905 + +0.4
297,906 - -1.2
298,050 + -0.7
298,050 + -0.7
298,050 + +0.1
298,050 + -0.7
298,050 + -3.2
298,051 - -0.5
298,051 - -0.9
298,051 - -1.7
298,051 - -0.1
298,051 - +2.5
298,051 - -1.1
298,189 + MPMX19_05587 0.15 -1.0
298,189 + MPMX19_05587 0.15 -0.1
298,189 + MPMX19_05587 0.15 +0.3
298,189 + MPMX19_05587 0.15 -0.8
298,189 + MPMX19_05587 0.15 -1.2
298,189 + MPMX19_05587 0.15 -1.1
298,189 + MPMX19_05587 0.15 -1.7
298,189 + MPMX19_05587 0.15 -1.4
298,189 + MPMX19_05587 0.15 -0.7
298,189 + MPMX19_05587 0.15 -1.4
298,189 + MPMX19_05587 0.15 -0.7
298,189 + MPMX19_05587 0.15 -0.7
298,189 + MPMX19_05587 0.15 -0.3
298,189 + MPMX19_05587 0.15 -0.4
298,189 + MPMX19_05587 0.15 -0.8
298,189 + MPMX19_05587 0.15 -0.8
298,189 + MPMX19_05587 0.15 -0.7
298,189 + MPMX19_05587 0.15 +0.7
298,190 - MPMX19_05587 0.15 -0.6
298,190 - MPMX19_05587 0.15 +0.9
298,190 - MPMX19_05587 0.15 -0.5
298,190 - MPMX19_05587 0.15 +0.2
298,190 - MPMX19_05587 0.15 +0.3
298,190 - MPMX19_05587 0.15 -0.8
298,191 + MPMX19_05587 0.15 -0.6
298,192 - MPMX19_05587 0.15 -0.6
298,232 - MPMX19_05587 0.19 -0.7
298,550 - MPMX19_05587 0.51 -1.2
298,837 + MPMX19_05587 0.80 -1.2
298,837 + MPMX19_05587 0.80 +1.3
298,837 + MPMX19_05587 0.80 -0.7
298,837 + MPMX19_05587 0.80 -0.4
298,838 - MPMX19_05587 0.80 +0.3
298,919 - MPMX19_05587 0.88 +1.2
298,919 - MPMX19_05587 0.88 -1.5
299,226 + MPMX19_05588 0.11 -0.0
299,226 + MPMX19_05588 0.11 -0.7
299,226 + MPMX19_05588 0.11 +0.7
299,227 - MPMX19_05588 0.12 -1.6
299,227 - MPMX19_05588 0.12 +0.0
299,232 + MPMX19_05588 0.12 -1.1
299,232 + MPMX19_05588 0.12 -1.1
299,232 + MPMX19_05588 0.12 -0.5
299,232 + MPMX19_05588 0.12 -0.3
299,233 - MPMX19_05588 0.12 +0.4
299,233 - MPMX19_05588 0.12 +0.5
299,233 - MPMX19_05588 0.12 +1.0
299,541 + MPMX19_05588 0.32 +0.8
299,541 + MPMX19_05588 0.32 -0.9

Or see this region's nucleotide sequence