Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04837

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04835 and MPMX19_04836 are separated by 22 nucleotidesMPMX19_04836 and MPMX19_04837 are separated by 184 nucleotidesMPMX19_04837 and MPMX19_04838 are separated by 34 nucleotidesMPMX19_04838 and MPMX19_04839 are separated by 458 nucleotides MPMX19_04835: MPMX19_04835 - hypothetical protein, at 242,400 to 242,861 _04835 MPMX19_04836: MPMX19_04836 - Iron-binding protein IscA, at 242,884 to 243,228 _04836 MPMX19_04837: MPMX19_04837 - hypothetical protein, at 243,413 to 244,306 _04837 MPMX19_04838: MPMX19_04838 - Heme oxygenase (staphylobilin-producing), at 244,341 to 244,667 _04838 MPMX19_04839: MPMX19_04839 - hypothetical protein, at 245,126 to 248,149 _04839 Position (kb) 243 244 245Strain fitness (log2 ratio) -3 -2 -1 0 1at 242.547 kb on + strand, within MPMX19_04835at 242.547 kb on + strand, within MPMX19_04835at 242.601 kb on + strand, within MPMX19_04835at 242.646 kb on + strand, within MPMX19_04835at 242.646 kb on + strand, within MPMX19_04835at 242.653 kb on + strand, within MPMX19_04835at 242.687 kb on + strand, within MPMX19_04835at 242.687 kb on + strand, within MPMX19_04835at 242.852 kb on + strandat 242.869 kb on + strandat 242.869 kb on + strandat 242.869 kb on + strandat 242.869 kb on + strandat 242.869 kb on + strandat 243.237 kb on - strandat 243.332 kb on + strandat 243.333 kb on - strandat 243.333 kb on - strandat 243.403 kb on + strandat 243.403 kb on + strandat 243.403 kb on + strandat 243.403 kb on + strandat 243.404 kb on - strandat 243.404 kb on - strandat 243.404 kb on - strandat 243.461 kb on - strandat 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.714 kb on + strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.715 kb on - strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on + strand, within MPMX19_04837at 243.783 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837at 243.784 kb on - strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.107 kb on + strand, within MPMX19_04837at 244.108 kb on - strand, within MPMX19_04837at 244.108 kb on - strand, within MPMX19_04837at 244.108 kb on - strand, within MPMX19_04837at 244.108 kb on - strand, within MPMX19_04837at 244.108 kb on - strand, within MPMX19_04837at 244.108 kb on - strand, within MPMX19_04837at 244.108 kb on - strand, within MPMX19_04837at 244.192 kb on + strand, within MPMX19_04837at 244.192 kb on + strand, within MPMX19_04837at 244.192 kb on + strand, within MPMX19_04837at 244.193 kb on - strand, within MPMX19_04837at 244.193 kb on - strand, within MPMX19_04837at 244.408 kb on + strand, within MPMX19_04838at 244.408 kb on + strand, within MPMX19_04838at 244.408 kb on + strand, within MPMX19_04838at 244.408 kb on + strand, within MPMX19_04838at 244.409 kb on - strand, within MPMX19_04838at 244.409 kb on - strand, within MPMX19_04838at 244.409 kb on - strand, within MPMX19_04838at 244.409 kb on - strand, within MPMX19_04838at 244.409 kb on - strand, within MPMX19_04838at 244.513 kb on + strand, within MPMX19_04838at 244.513 kb on + strand, within MPMX19_04838at 244.513 kb on + strand, within MPMX19_04838at 244.513 kb on + strand, within MPMX19_04838at 244.513 kb on + strand, within MPMX19_04838at 244.513 kb on + strand, within MPMX19_04838at 244.514 kb on - strand, within MPMX19_04838at 244.514 kb on - strand, within MPMX19_04838at 244.514 kb on - strand, within MPMX19_04838at 244.514 kb on - strand, within MPMX19_04838at 244.514 kb on - strand, within MPMX19_04838at 244.715 kb on + strandat 244.715 kb on + strandat 244.716 kb on - strandat 244.762 kb on + strandat 244.762 kb on + strandat 244.762 kb on + strandat 244.763 kb on - strandat 244.763 kb on - strandat 244.763 kb on - strandat 244.763 kb on - strandat 244.811 kb on + strandat 244.811 kb on + strandat 244.812 kb on - strandat 244.812 kb on - strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.854 kb on + strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.855 kb on - strandat 244.873 kb on + strandat 245.053 kb on - strandat 245.059 kb on + strandat 245.060 kb on - strandat 245.063 kb on - strandat 245.065 kb on - strandat 245.070 kb on + strandat 245.071 kb on - strandat 245.077 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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242,547 + MPMX19_04835 0.32 -0.8
242,547 + MPMX19_04835 0.32 +0.7
242,601 + MPMX19_04835 0.44 -1.0
242,646 + MPMX19_04835 0.53 -1.7
242,646 + MPMX19_04835 0.53 +0.3
242,653 + MPMX19_04835 0.55 +0.2
242,687 + MPMX19_04835 0.62 +0.5
242,687 + MPMX19_04835 0.62 +0.5
242,852 + +1.4
242,869 + +0.1
242,869 + -0.5
242,869 + +0.3
242,869 + +0.2
242,869 + -0.2
243,237 - +1.1
243,332 + -2.1
243,333 - -0.0
243,333 - -0.5
243,403 + -1.0
243,403 + +0.5
243,403 + -1.0
243,403 + -0.2
243,404 - +0.5
243,404 - +0.2
243,404 - +0.4
243,461 - -1.0
243,714 + MPMX19_04837 0.34 -0.2
243,714 + MPMX19_04837 0.34 -0.2
243,714 + MPMX19_04837 0.34 -1.3
243,714 + MPMX19_04837 0.34 -0.3
243,714 + MPMX19_04837 0.34 -1.6
243,714 + MPMX19_04837 0.34 -0.9
243,714 + MPMX19_04837 0.34 -1.4
243,714 + MPMX19_04837 0.34 +1.1
243,714 + MPMX19_04837 0.34 +0.6
243,714 + MPMX19_04837 0.34 -0.5
243,714 + MPMX19_04837 0.34 -0.9
243,715 - MPMX19_04837 0.34 -1.1
243,715 - MPMX19_04837 0.34 +0.3
243,715 - MPMX19_04837 0.34 -0.1
243,715 - MPMX19_04837 0.34 -1.5
243,715 - MPMX19_04837 0.34 +1.1
243,715 - MPMX19_04837 0.34 -0.1
243,715 - MPMX19_04837 0.34 +0.5
243,715 - MPMX19_04837 0.34 +0.9
243,715 - MPMX19_04837 0.34 -0.6
243,783 + MPMX19_04837 0.41 -0.8
243,783 + MPMX19_04837 0.41 -0.9
243,783 + MPMX19_04837 0.41 -0.1
243,783 + MPMX19_04837 0.41 -2.3
243,783 + MPMX19_04837 0.41 -0.2
243,783 + MPMX19_04837 0.41 +0.8
243,783 + MPMX19_04837 0.41 -1.1
243,783 + MPMX19_04837 0.41 -0.5
243,783 + MPMX19_04837 0.41 +0.9
243,783 + MPMX19_04837 0.41 -1.1
243,783 + MPMX19_04837 0.41 -0.7
243,783 + MPMX19_04837 0.41 -0.2
243,783 + MPMX19_04837 0.41 -1.3
243,783 + MPMX19_04837 0.41 +0.3
243,783 + MPMX19_04837 0.41 -0.0
243,783 + MPMX19_04837 0.41 -1.8
243,783 + MPMX19_04837 0.41 +0.4
243,783 + MPMX19_04837 0.41 +0.5
243,783 - MPMX19_04837 0.41 +1.5
243,784 - MPMX19_04837 0.41 +1.4
243,784 - MPMX19_04837 0.41 +0.2
243,784 - MPMX19_04837 0.41 +0.2
243,784 - MPMX19_04837 0.41 -1.0
243,784 - MPMX19_04837 0.41 -0.7
243,784 - MPMX19_04837 0.41 +0.9
243,784 - MPMX19_04837 0.41 -0.3
244,107 + MPMX19_04837 0.78 -1.0
244,107 + MPMX19_04837 0.78 +0.6
244,107 + MPMX19_04837 0.78 +0.5
244,107 + MPMX19_04837 0.78 -1.2
244,107 + MPMX19_04837 0.78 -0.2
244,107 + MPMX19_04837 0.78 +0.7
244,107 + MPMX19_04837 0.78 -1.6
244,107 + MPMX19_04837 0.78 -1.1
244,107 + MPMX19_04837 0.78 +0.9
244,107 + MPMX19_04837 0.78 +1.1
244,107 + MPMX19_04837 0.78 -0.5
244,107 + MPMX19_04837 0.78 -0.7
244,108 - MPMX19_04837 0.78 -1.1
244,108 - MPMX19_04837 0.78 +0.6
244,108 - MPMX19_04837 0.78 +0.5
244,108 - MPMX19_04837 0.78 -0.5
244,108 - MPMX19_04837 0.78 -1.3
244,108 - MPMX19_04837 0.78 -2.0
244,108 - MPMX19_04837 0.78 -0.4
244,192 + MPMX19_04837 0.87 -0.9
244,192 + MPMX19_04837 0.87 -0.1
244,192 + MPMX19_04837 0.87 -1.0
244,193 - MPMX19_04837 0.87 -1.1
244,193 - MPMX19_04837 0.87 +0.7
244,408 + MPMX19_04838 0.20 -0.9
244,408 + MPMX19_04838 0.20 -2.8
244,408 + MPMX19_04838 0.20 -0.8
244,408 + MPMX19_04838 0.20 +0.3
244,409 - MPMX19_04838 0.21 -1.7
244,409 - MPMX19_04838 0.21 -1.2
244,409 - MPMX19_04838 0.21 -0.1
244,409 - MPMX19_04838 0.21 +0.9
244,409 - MPMX19_04838 0.21 -1.0
244,513 + MPMX19_04838 0.53 +0.6
244,513 + MPMX19_04838 0.53 -1.3
244,513 + MPMX19_04838 0.53 -1.8
244,513 + MPMX19_04838 0.53 -0.5
244,513 + MPMX19_04838 0.53 -1.5
244,513 + MPMX19_04838 0.53 +0.5
244,514 - MPMX19_04838 0.53 -0.4
244,514 - MPMX19_04838 0.53 -1.8
244,514 - MPMX19_04838 0.53 -0.7
244,514 - MPMX19_04838 0.53 -1.3
244,514 - MPMX19_04838 0.53 -0.0
244,715 + +1.5
244,715 + +0.2
244,716 - -1.8
244,762 + -1.9
244,762 + -0.2
244,762 + +0.5
244,763 - -0.6
244,763 - -2.0
244,763 - +0.7
244,763 - -0.2
244,811 + -2.7
244,811 + +0.2
244,812 - +0.3
244,812 - -0.9
244,854 + +0.2
244,854 + +0.9
244,854 + +0.4
244,854 + +0.6
244,854 + -0.5
244,854 + +0.7
244,854 + -0.4
244,854 + -0.9
244,854 + +0.4
244,854 + -0.4
244,854 + +0.9
244,854 + -0.9
244,855 - -0.4
244,855 - +0.7
244,855 - -0.7
244,855 - -1.5
244,855 - -1.5
244,855 - -0.6
244,855 - +0.1
244,855 - +0.3
244,855 - -0.8
244,855 - -0.7
244,855 - +0.1
244,855 - -1.2
244,855 - +0.4
244,855 - -0.7
244,855 - -0.7
244,873 + -1.4
245,053 - +0.1
245,059 + -0.5
245,060 - -1.1
245,063 - -0.6
245,065 - -0.6
245,070 + -0.9
245,071 - -0.1
245,077 + -2.6

Or see this region's nucleotide sequence